- Volume 67, Issue 10, 2017
Volume 67, Issue 10, 2017
- New taxa
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- Archaea
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Saliphagus infecundisoli gen. nov., sp. nov., an extremely halophilic archaeon isolated from a saline soil
Two extremely halophilic archaea, strains YIM 93745T and YIM 93707, were isolated from a saline soil sample collected from Loulan, China. Cells of the two strains were coccus, non-motile and Gram-stain negative. The strains were aerobic and grew at 25–50 °C (optimum, 37 °C), in the presence of 5–35 % (w/v) NaCl (optimum, 20 %), 0.01–0.1 M Mg2 + (optimum, 0.03 M) and pH 6.0–8.5 (optimum, 7.0–7.5). Cells lysed in distilled water and with 0–5 % NaCl. Major polar lipids were phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester, phosphatidylglycerol sulfate, sulfated mannosyl glycosyl diether and two unidentified glycolipids. Phylogenetic analysis based on the 16S rRNA sequence revealed that the two strains were most closely related to Halovivax cerinus IC35T (95.1 and 95.2 % sequence similarities, respectively). The two strains, however, shared highest rpoB’ gene sequence identities with Natrinema pellirubrum JCM 10476T (87.8 and 87.7 % respectively). Phylogenetic trees based on 16S rRNA and rpoB’ gene sequences demonstrated a robust clade of the two strains with members of related genera of the family Natrialbaceae . The DNA G+C contents of the two strains were 64.6 and 64.4 mol%, respectively. DNA–DNA relatedness values between them were 95±2 %. Phenotypic, chemotaxonomic characteristics and phylogenetic properties suggested that the two strains YIM 93745T and YIM 93707 represent a novel species in a new genus within the family Natrialbaceae , for which the name Saliphagus infecundisoli gen. nov., sp. nov. is proposed. The type strain is YIM 93745T (=KCTC 4228T=CGMCC 1.15824T).
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- Bacteroidetes
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Parapedobacter lycopersici sp. nov., isolated from the rhizosphere soil of tomato plants (Solanum lycopersicum L.)
A novel Gram-stain-negative bacterial strain, designated T16R-256T, was isolated from the rhizosphere soil of tomato plants grown in a greenhouse in Yecheon-gun, Gyeongsangbuk-do, Republic of Korea and characterized using polyphasic taxonomy. Cells were aerobic, non-flagellated and rod-shaped. Colonies were light yellow, convex and round. The strain grew in the temperature range of 15–37 °C (optimally at 28–30 °C) and pH range of 7.0–9.0 (optimally at 7.0–8.0) and in 4 % NaCl (w/v). A comparison of 16S rRNA gene sequences showed that strain T16R-256T is a member of the genus Parapedobacter , exhibiting high sequence similarity with Parapedobacter pyrenivorans P-4T (94.2 %), Parapedobacter indicus RK1T (93.7 %), Parapedobacter koreensis Jip14T (93.7 %), Parapedobacter luteus 4M29T (93.6 %) and Parapedobacter soli DCY14T (93.4 %). The major polar lipids were phosphatidylethanolamine, sphingolipid, one aminophospholipid, two aminolipids and three unknown lipids. The major fatty acids (>10 % of the total fatty acids) were iso-C15 : 0, iso-C17 : 0 3-OH and iso-C15 : 0 2-OH/C16 : 1ω7c. Strain T16R-256T contained MK-7 as the predominant respiratory quinone and homospermidine as the major polyamine. The genomic DNA G+C content of the type strain was 55.5 mol%. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain T16R-256T should be designated as representative of a novel species of the genus Parapedobacter , for which the name Parapedobacter lycopersici sp. nov. is proposed. The type strain is T16R-256T (=KACC 18788T=JCM 31602T).
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Croceivirga radicis gen. nov., sp. nov., isolated from a rotten tropical mangrove root
A novel bacterial strain, designated HSG9T, was isolated from aisolated from a rotten tropical mangrove root. Cells of strain HSG9T were aerobic, Gram-stain-negative, yellow, oxidase-negative and catalase-positive. Growth was observed in 0.5–9 % sea salt (optimum 3 %, w/v), at 10–42 °C (optimum 25–35 °C) and at pH 6.0–8.0 (optimum 7.0–8.0). Gelatin, esterase and Tweens 20, 40, 60 and 80 were hydrolysed, but starch, protein, cellulose and casein were not. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain HSG9T formed an independent lineage related to the family Flavobacteriaceae . The dominant fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH and iso-C15 : 1 G. The respiratory quinone was identified as MK-6 and the polar lipids were phosphatidylethanolamine, three unidentified phospholipids and an unidentified lipid. The DNA G+C content was 37.1 mol%. The combined genotypic and phenotypic data indicated that strain HSG9T represents a novel species of a new genus within the family Flavobacteriaceae , for which the name Croceivirgaradicis gen. nov., sp. nov. is proposed. The type strain is HSG9T (=MCCC 1A06690T=KCTC 52589T).
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Larkinella ripae sp. nov., isolated from seashore soil
Strain 15J11-11T was isolated from soil collected at the seashore and was Gram-staining-negative, short-rod-shaped, gliding and pale-pink pigmented. Flexirubin-type pigments were absent. The isolate grew at a temperature range of 15 to 30 °C and a pH range of 7 to 8. Comparative 16S rRNA gene sequence studies showed that strain 15J11-11T belonged to the genus Larkinella within the phylum Bacteroidetes and was most closely related to Larkinella arboricola Z0532T (95.6 %), Larkinella bovis M2TB15T (95.4 %), and Larkinella insperata LMG 22510T (95.2 %). The genomic DNA G+C content of strain 15J11-11T was 53.2 mol%. The strain contained phosphatidylethanolamine, phosphatidylserine, an unidentified aminophospholipid and two unidentified polar lipids as the major polar lipids; menaquinone-7 as the predominant quinone and C16 : 1ω5c, iso-C15 : 0 and iso-C17 : 0 3-OH as the major fatty acids which supported the affiliation of strain 15J11-11T to the genus Larkinella . Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J11-11T represents a novel species of the genus Larkinella, for which the name Larkinella ripae sp. nov. is proposed. The type strain is 15J11-11T (=KCTC 42996T=JCM 31657T).
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Maribacter pelagius sp. nov., isolated from seawater
More LessA Gram-stain-negative, gliding, non-endospore-forming and slightly halophilic bacterial strain, CBA3204T, was isolated from seawater and characterized by polyphasic taxonomic analysis. Phylogenetic analysis based on 16S rRNA sequences revealed that strain CBA3204T formed a distinct lineage within the family Flavobacteriaceae . The 16S rRNA sequences of strain CBA3204T had a sequence similarity level of 96.96 % to Maribacter arcticus KOPRI 20941T as the nearest phylogenetic neighbour. The strain grew optimally at 25–30 °C and in the presence of 2–4 % (w/v) NaCl. The dominant menaquinone was MK-6 and the major fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH and iso-C15 : 1 G. The DNA G+C content was 35.1 mol%. There were some differences in phenotypic properties among strain CBA3204T and other Maribacter species. On the basis of polyphasic analysis containing phenotypic, phylogenetic and chemotaxonomic data, strain CBA3204T (=KACC 17671T=JCM 19533T) is proposed as a novel species Maribacter pelagius sp. nov.
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Winogradskyella maritima sp. nov., isolated from seawater
More LessA novel bacterium, designated HME9613T, was isolated from seawater of the Yellow Sea in the Republic of Korea. Cells of strain HME9613T were Gram-stain-negative, aerobic, motile by gliding and rod-shaped. Strain HME9613T grew optimally at 25 °C, at pH 7 and in the presence of 3 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain HME9613T formed a lineage within the genus Winogradskyella of the family Flavobacteriaceae , and showed highest sequence similarity to Winogardskyella exilis 022-2-26T (95.9 %). The 16S rRNA gene sequence similarity between strain HME9613T and other Winogradskyella species ranged from 93.7 to 95.9 %. The major fatty acids were iso-C15 : 1 G, summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) and iso-C15 : 0. The polar lipid profile consisted of phosphatidylethanolamine, two unidentified aminolipids and two unidentified lipids. The predominant respiratory quinone was menaquinone-6 (MK-6). The DNA G+C content of the strain HME9613T was 38.4 mol%. On the basis of phenotypic, chemotaxonomic, phylogenetic and genotypic data, strain HME9613T represents a novel species within the genus Winogradskyella , for which the name Winogradskyella maritima sp. nov. is proposed. The type strain is HME9613T (=KCTC 42189T=CECT 8979T).
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Sphingobacterium corticis sp. nov., isolated from bark of Populus × euramericana
More LessA Gram-stain negative, aerobic, non-motile bacterial strain, 23D10-4-9T, was isolated from symptomatic canker bark tissue of Populus × euramericana. The isolate grew between 4 and 35 °C, with optimal growth occurring at 25 °C. The species was positive for catalase and negative for oxidase activity. Nitrate was not reduced to nitrite. It showed activities toward β-galactosidase and β-glucosidase. Citrate was not utilized. Acid was produced from d-glucose. The major fatty acids were iso-C15 : 0, C16 : 1ω7c and iso-C17 : 0 3-OH. The main polar lipid profiles of the novel isolate included phosphatidylethanolamine, phospholipids and seven unknown lipids. The predominant menaquinone of the novel isolate was MK-7. The DNA G+C content was 40.6 mol%. 16S rRNA gene data revealed that the novel isolate shares the greatest sequence similarity with Sphingobacterium populi 7Y-4T (96.1 %). Based on phenotypic and genotypic characteristics, the isolate represents a novel species within the genus Sphingobacterium , for which the name Sphingobacterium corticis sp. nov. is proposed. The type strain is 23D10-4-9T (=CFCC 12640T=KCTC 42248T).
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Geofilum rhodophaeum sp. nov., isolated from coastal sediment
More LessA novel Gram-stain-negative, facultatively anaerobic, filamentous and rose-brown pigmented bacterium, designated strain HF401T, was isolated from marine sediment off the coast of Weihai, China. The isolate grew at temperatures between 4 and 45 °C (optimal growth at 33 °C), at pH 6.5–8.5 (optimal growth at pH 7.5) and with 0.5–6.0 % (w/v) NaCl (optimal growth at 3.0 %). The predominant menaquinone was menaquinone 7 (MK-7). The G+C content of the genomic DNA was 50.8 mol% (from high-performance liquid chromatography). The major fatty acids were iso-C15 : 0, C16:0, anteiso-C15 : 0 and summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2OH). The major polar lipids were phosphatidylethanolamine, phospholipid and an unidentified lipid. Phylogenetic analysis of 16S rRNA gene sequences indicated that strain HF401T formed a distinct branch with Geofilum rubicundum JCM 15548T in the family Marinilabiliaceae . The most closely related strains of strain HF401T were Natronoflexuspectinivorans AP1T (96.2 % 16S rRNA gene sequence similarity), G. rubicundum JCM 15548T (96.2 %) and Alkalitaleasaponilacus SC/BZ-SP2T (96.0 %). Average nucleotide identity (ANI) values between strain HF401T and G. rubicundum JCM 15548T showed a relatedness of 71.3 % (ANIb) and 86.0 % (ANIm). The percentage of conserved proteins (POCP) value between strain HF401T and G. rubicundum JCM 15548T was 61.2 %. Based on polyphasic analysis, especially the phylogenetic relationships and the higher POCP value, strain HF401T is considered to represent a novel species in the genus Geofilum, for which the name Geofilum rhodophaeum sp. nov. is proposed. The type strain of Geofilum rhodophaeum is HF401T (KCTC 42595T=MCCC 1H00119T).
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Flavobacterium quisquiliarum sp. nov., isolated from activated sludge
More LessA Gram-staining-negative, aerobic, rod-shaped bacterium, EA-12T, was isolated from activated sludge in Fujian Province, PR China. The results of phylogenetic analysis of the 16S rRNA gene sequences indicated that it was closely related to Flavobacterium pectinovorum DSM 6368T (97.5 %), Flavobacterium banpakuense 15F3T (97.0 %) and Flavobacterium arsenitoxidans S2-3HT (96.9 %). Cells grew at 15–37 °C (optimum, 25 °C), at pH 5.0–9.0 (optimum, pH 7.0) and in the presence of 0–1.0 % (w/v) NaCl. The strain contained MK-6 as the major menaquinone and the major cellular fatty acids were iso-C15 : 0, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and C16 : 0 3-OH. The polar lipids consisted of phosphatidylethanolamine and one unidentified phospholipid. The DNA G+C content was 36.1 mol% (Tm ). The DNA–DNA relatedness between strain EA-12T and F. pectinovorum DSM 6368T was 38.6 %. On the basis of phenotypic, chemotaxonomic and phylogenetic comparisons with relatives and DNA–DNA relatedness values, it is concluded that EA-12T represents a novel species within the genus Flavobacterium , for which the name Flavobacterium quisquiliarum sp. nov. is proposed. The type strain is EA-12T (=CGMCC 1.15345T=NBRC 111769T).
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Flavobacterium ardleyense sp. nov., isolated from Antarctic soil
More LessA Gram-stain-negative, aerobic, yellow-pigmented, non-flagellated, non-gliding, rod-like, oxidase- and catalase-positive bacterium, designated A2-1T, was isolated from soil on Ardley Island, South Shetland Islands, Antarctica. Strain A2-1T grew at 4–22 °C (optimum, 10 °C), at pH 6.0–8.0 (optimum, pH 6.5) and with 0–1.5 % NaCl (optimum, 0.5 %), but could not produce flexirubin-type pigments. 16S rRNA gene sequence analysis showed that the isolates belonged to the genus Flavobacterium . Strain A2-1T had the highest 16S rRNA gene sequence similarity to Flavobacterium cucumis , F. ahnfeltiae and F. cheniae with 95.7, 95.6 and 95.4 %, respectively. The strain A2-1T consisted of a clade with F. cucumis and F. cheniae and simultaneously formed a distinct phyletic lineage in the neighbour-joining phylogenetic tree. Polar lipids of the strain included phosphatidylethanolamine (PE), four unidentified aminolipids and one unidentified lipid. The strain A2-1T contained anteiso-C15 : 0 (20.2 %), iso-C15 : 0 (16.2 %) and C15 : 1 G (11.0 %) as the main fatty acids and the only respiratory quinone was menaquinone MK-6. The genomic DNA G+C content was 34.0 mol%. The polyphasic taxonomic study revealed that the strain A2-1T belongs to a novel species within the genus Flavobacterium and the name Flavobacterium ardleyense sp. nov. is proposed. The type strain is A2-1T (=CCTCC AB 2017157T=KCTC 52644T).
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Mucilaginibacter terrae sp. nov., isolated from Antarctic soil
A bacterial strain designated CCM 8645T was isolated from a soil sample collected nearby a mummified seal carcass in the northern part of James Ross Island, Antarctica. The cells were short rods, Gram-stain-negative, non-motile, catalase and oxidase positive, and produced a red-pink pigment on R2A agar. A polyphasic taxonomic approach based on 16S rRNA gene sequencing, extensive biotyping using conventional tests and commercial identification kits and chemotaxonomic analyses were applied to clarify its taxonomic position. Phylogenetic analysis based on the 16S rRNA gene placed strain CCM 8645T in the genus Mucilaginibacter with the closest relative being Mucilaginibacter daejeonensis Jip 10T, exhibiting 96.5 % 16S rRNA pairwise similarity which was clearly below the 97 % threshold value recommended for species demarcation. The major components in fatty acid profiles were Summed feature 3 (C16 : 1 ω7c/C16 : 1 ω6c), C15 : 0 iso and C17 : 0 iso 3OH. The cellular quinone content was exclusively menaquinone MK-7. The major polyamine was sym-homospermidine and predominant polar lipids were phosphatidylethanolamine and phosphatidylserine. Based on presented results, we propose a novel species for which the name Mucilaginibacter terrae sp. nov. is suggested, with the type strain CCM 8645T (=LMG 29437T).
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Confluentibacter citreus sp. nov., isolated from lake sediment, and emended description of the genus Confluentibacter
More LessA Gram-stain-negative, non-gliding, aerobic and rod-shaped bacterium, designated XJNYT, was isolated from Sayram Lake (44° 30′ 30.41″ N 81° 12′ 39.55″ E), Xinjiang Province, north-west China, and was characterized taxonomically by a polyphasic study. Strain XJNYT grew at salinities of 0–4 % (w/v) and temperatures of 4–37 °C. The pH range for growth was 6.5–8.5. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain XJNYT belonged to the genus Confluentibacter and was closely related to the type strain of Confluentibacter lentus with 97.8 % similarity. The DNA G+C content was 34.5 mol%. The major fatty acids were iso-C15 : 0, iso-C15 : 1 G, anteiso-C15 : 0, iso-C15 : 0 3-OH, C17 : 0 2-OH and iso-C17 : 0 3-OH. The major respiratory isoprenoid quinone was menaquinone-6 (MK-6) and the polar lipids were phosphatidylethanolamine, an unidentified phospholipid, two unidentified aminolipids and four unidentified lipids. On the basis of morphological, physiological and molecular properties and phylogenetic distinctiveness, strain XJNYT represents a novel species within the genus Confluentibacter , for which the name Confluentibacter citreus sp. nov. is proposed. The type strain is XJNYT (=KCTC 52638T=MCCC 1H00183T).
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Polaribacter insulae sp. nov., isolated from a tidal flat
More LessA Gram-stain-negative, aerobic, non-motile and ovoid or rod-shaped bacterial strain, designated OITF-22T, was isolated from a tidal flat of Oido, an island of South Korea, and subjected to a polyphasic taxonomic study. Strain OITF-22T grew optimally at 25 °C, at pH 7.0–8.0 and in the presence of 2.0–3.0 % (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that strain OITF-22T fell within the clade comprising the type strains of Polaribacter species. Strain OITF-22T exhibited 16S rRNA gene sequence similarity values of 97.2–99.4 % to the type strains of Polaribacter vadi , P. haliotis , P. atrinae , P. dokdonensis , P. litorisediminis, P. reichenbachii , P. irgensii and P. marinaquae , and of 93.0–96.9 % to the type strains of the other Polaribacter species. Strain OITF-22T contained MK-6 as the predominant menaquinone and iso-C15 : 0 and iso-C15 : 0 3-OH as the major fatty acids. The major polar lipids detected in strain OITF-22T were phosphatidylethanolamine and one unidentified lipid. The DNA G+C content of strain OITF-22T was 32.3 mol% and its DNA–DNA relatedness values with the type strains of the eight phylogenetically most closely related Polaribacter species were 9–32 %. Differential phenotypic properties, together with phylogenetic and genetic distinctiveness, revealed that strain OITF-22T is separated from recognized species of the genus Polaribacter . On the basis of the data presented, strain OITF-22T is considered to represent a novel species of the genus Polaribacter , for which the name Polaribacter insulae sp. nov. is proposed. The type strain is OITF-22T (=KCTC 52658T=NBRC 112706T).
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Crocinitomix algicola sp. nov., isolated from Gracilaria blodgettii
More LessA Gram-stain-negative, strictly aerobic, non-flagellated, yellow-pigmented, rod-shaped bacterial strain, designated 0182T, was isolated from Gracilaria blodgettii, an algae of phylum Rhodophyta collected from coast of Lingshui county, Hainan, China (110° 03′ 44.2′′ E, 18° 24′ 29.8′′ N). The strain grew optimally at 30 °C, pH 7.0–7.5 and in the presence of 2.0–3.0 % (w/v) NaCl. Cells of strain 0182T were approximately 0.9–2.5 µm in length and 0.2–0.4 µm in width. The major respiratory quinone was MK-7. The predominant cellular fatty acids were iso-C15 : 0, C15 : 0 and iso-C17 : 0 3-OH. The major polar lipids were phosphoaminolipid, glycolipid, two unknown aminolipids and four unknown lipids. The DNA G+C content was approximately 35.4 mol%. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 0182T was phylogenetically related to members of the genus Crocinitomix and was closely related to Crocinitomix catalasitica with 94.6 % sequence similarity. On the basis of genotypic and phenotypic characteristics and phylogenetic evidence, strain 0182T is thought to represent a novel species of the genus Crocinitomix , for which the name Crocinitomix algicola sp. nov. is proposed. The type strain is 0182T (=KCTC 42868T =MCCC 1H00128T).
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Salinimicrobium flavum sp. nov., isolated from coastal sediment
More LessA novel Gram-stain-negative, non-gliding, facultatively anaerobic and rod-shaped bacterium, designated X7T, was isolated from marine sediment taken from the coast of Weihai, China. Strain X7T grew optimally at 28–30 °C, at pH 7.0 and in the presence of 2–3 % (w/v) NaCl. Based on the 16S rRNA gene sequence analysis, strain X7T was a member of the genus Salinimicrobium and was most closely related to the species Salinimicrobium gaetbulicola with a 96.3 % 16S rRNA gene sequence similarity value. The major cellular fatty acids of strain X7T were anteiso-C15 : 0, iso-C15 : 0, anteiso-C17 : 1ω9c, iso-C17 : 1ω9c, C17 : 0 2-OH and iso-C17 : 0 3-OH. The major polar lipids of strain X7T were phosphatidylethanolamine, one unidentified phospholipid, two unidentified aminolipids and five unidentified lipids. The predominant respiratory quinone was MK-6, and the genomic DNA G+C content was 46.7 mol%. Phylogenetic, phenotypic, chemotaxonomic and genotypic results indicated that strain X7T represents a novel species of the genus Salinimicrobium , for which the name Salinimicrobium flavum sp. nov. is proposed. The type strain is X7T (=KCTC 42585T=MCCC 1H00115T).
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Hymenobacter frigidus sp. nov., isolated from a glacier ice core
A psychrophilic, Gram-stain-negative, rod-shaped, red-pigmented bacterium, designated strain B1789T, was isolated from an ice core of Muztagh Glacier on the Tibetan Plateau in China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain B1789T was related to members of the genus Hymenobacter and had highest sequence similarity with Hymenobacter antarcticus JCM 17217T (97.9 %). The major menaquinone was MK-7 and the major polar lipid was phosphatidylethanolamine. The predominant fatty acids were iso-C15 : 0, anteiso-C15 : 0 and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c). The DNA G+C content was 59.4 mol%. In DNA–DNA hybridization tests, strain B1789T shared 42 % relatedness with H. antarcticus JCM 17217T. Based on the results of phenotypic and chemotaxonomic tests, strain B1789T was considered as representing a novel species of the genus Hymenobacter , for which the name Hymenobacter frigidus sp. nov. is proposed. The type strain is B1789T (=JCM 30595T=CGMCC 1.14966T).
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Williamwhitmania taraxaci gen. nov., sp. nov., a proteolytic anaerobe with a novel type of cytology from Lake Untersee in Antarctica, description of Williamwhitmaniaceae fam. nov., and emendation of the order Bacteroidales Krieg 2012
The proteolytic bacterium strain A7P-90mT was isolated from Lake Untersee, Antarctica. The anoxic water was collected from a perennially sealed (~100 millennia) glacial ice lake. Gram-stain-negative cells were 0.18–0.3×8.0–25.0 µm in size, straight, slender rods with unusual gliding motility by external, not previously reported, organelles named here as antiae. At the end of stationary phase of growth, spheroplasts were terminally formed and the cells resembled dandelions. After death, cells were helical. The isolate was an athalassic, strictly anaerobic and catalase-negative proteolytic chemoorganotroph. It was moderately psychrophilic with a temperature range for growth of 3–26 °C and an optimum at 22–23 °C. The pH range for growth was 5.5–7.8 with an optimum at 6.9. Major cellular fatty acids were branched pentadecanoic and tridecanoic acids, and saturated tetradecanoic acids. The quinone system comprised menaquinone MK-7. The strain was sensitive to all checked antibiotics and ascorbic acid. The G+C content of the genomic DNA was 42.6 mol%. Based on average nucleotide identity, average amino acid identity and phylogenetic analyses, the novel isolate was placed within a unique phylogenetic cluster distant from all eight families in the order Bacteroidales and formed a novel family with the proposed name Williamwhitmaniaceae fam. nov. The description of the order Bacteroidales was emended accordingly. The name Williamwhitmania taraxaci gen. nov., sp. nov. is proposed for the new genus and novel species with the type strain A7P-90mT (=DSM 100563T=JCM 30888T). The complete draft genome sequence was deposited at the Joint Genomes Institute (JGI) under number IMG OID 2654588148 and in SRA listed as SRP088197.
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Natronotalea proteinilytica gen. nov., sp. nov. and Longimonas haloalkaliphila sp. nov., extremely haloalkaliphilic members of the phylum Rhodothermaeota from hypersaline alkaline lakes
More LessTwo proteolytic bacterial strains, BSker2T and BSker3T, were enriched from sediments of hypersaline alkaline lakes in Kulunda Steppe (Altai, Russia) with chicken feathers as substrate, followed by pure culture isolation on hypersaline alkaline media with casein. The cells were non-motile, filamentous, flexible rods. The isolates were obligately aerobic heterotrophs utilizing proteins and peptides as growth substrates. Both were obligate alkaliphiles, but differed in their pH optimum for growth: pH 9.5–9.8 for Bsker2T and pH 8.5–8.8 for BSker3T. The salt range for growth of both isolates was between 2 and 4.5 M total Na+ with an optimum at 2.5–3 M. No organic osmolytes were detected in cells of BSker2T, but they accumulated high intracellular concentrations of K+. The polar lipid fatty acids were dominated by unsaturated C16 and C18 species. The 16S rRNA gene phylogeny indicated that both strains belong to the recently proposed phylum Rhodothermaeota . BSker2T forms a novel genus-level branch, while BSker3T represents a novel species-level member in the genus Longimonas . On the basis of distinct phenotypic and genotypic properties, strain BSker2T (=JCM 31342T=UNIQEM U1009T) is proposed to be classified as a representative of a novel genus and species, Natronotalea proteinilyticagen. nov., sp. nov., and strain BSker3T (=JCM 31343T=UNIQEM U1010T) as a representative of a novel species, Longimonas haloalkaliphila sp. nov.
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Algoriphagus marisflavi sp. nov., isolated from water of an estuary environment
More LessA Gram-stain-negative, non-motile, aerobic and rod-shaped or ovoid bacterial strain, designated KEM-106T, was isolated from water of an estuary environment on the Yellow Sea, South Korea, and subjected to a polyphasic taxonomic study. Strain KEM-106T grew optimally at 30 °C and pH 7.0–8.0 and in the presence of 1.0–2.0 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain KEM-106T belonged to the genus Algoriphagus , clustering with the type strains of Algoriphagus litorisediminis and Algoriphagus aquaemixtae. Strain KEM-106T exhibited 16S rRNA gene sequence similarities of 96.5, 96.2 and 96.0 % to the type strains of Algoriphagus boritolerans , A. litorisediminis and A. aquaemixtae, respectively, and of 92.5–95.8 % to the type strains of the other Algoriphagus species. Strain KEM-106T contained MK-7 as the predominant menaquinone and iso-C15 : 0 and summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) as the major fatty acids. The major polar lipids were phosphatidylethanolamine and phosphatidylcholine. The DNA G+C content of strain KEM-106T was 42.7 mol%. Differential phenotypic properties, together with its phylogenetic distinctiveness, revealed that strain KEM-106T is separated from recognized species of the genus Algoriphagus . On the basis of the data presented, strain KEM-106T is considered to represent a novel species of the genus Algoriphagus , for which the name Algoriphagus marisflavi sp. nov. is proposed. The type strain is KEM-106T (=KCTC 52979T=NBRC 112904T).
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Spirosoma carri sp. nov., isolated from an automobile air conditioning system
More LessA Gram-stain-negative and yellow-pigmented bacterial strain, designated TX0406T, was isolated from an automobile evaporator core collected in Korea. The cells were non-motile, aerobic and rod-shaped. The strain grew at 15–37 °C (optimum, 25 °C), at pH 6.0–7.0 (optimum, 6.5) and in the presence of 0–1.5 % (w/v) NaCl. Phylogenetically, the strain was related to members of the genus Spirosoma (93.7–90.7 % 16S rRNA sequence similarities) and showed the highest sequence similarity of 93.7 % to Spirosomapulveris JSH5-14T. The major fatty acids of the strain were summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c), C16 : 1 ω5c and C16 : 0. The predominant menaquinone was MK-7. The polar lipid profile revealed the presence of phosphatidylethanolamine, an unidentified aminolipid, unidentified aminophospholipids and unidentified lipids. The DNA G+C content of the strain was 58.7 mol%. Based on phenotypic, genotypic and chemotaxonomic data, strain TX0406T represents a novel species in the genus Spirosoma , for which the name Spirosoma carri sp. nov. (=KACC 19013T=NBRC 112494T) is proposed.
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