Microbial Genomics

Microbial Genomics

E-ISSN: 2057-5858

Microbial Genomics pioneers all areas of genome research spanning the breadth of microbial life including viruses, bacteria, archaea and microbial eukaryotes. We welcome articles showing novel insights, new applications, or innovative approaches using genomic data. Content ranges from comparative and functional genomics of model organisms to population-scale evolution, epidemiology and microbiome studies, and real-world genomics applications with clinical, veterinary or environmental relevance. See full journal scope

NOTE: Microbial Genomics has now moved to continuous publication. The 'Open issue' will display the latest published articles, which will be continuously added throughout the month.

Editorial Board
Editor-in-Chief: Professor Kathryn Holt, Monash University, Australia and London School of Hygiene and Tropical Medicine, UK
Deputy Editor-in-Chief: Professor Samuel K. Sheppard, The Milner Centre for Evolution, University of Bath, UK
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Microbial Genomics

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gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae

Improved molecular characterization of the Klebsiella oxytoca complex reveals the prevalence of the kleboxymycin biosynthetic gene cluster

rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data

Mining genome traits that determine the different gut colonization potential of Lactobacillus and Bifidobacterium species

Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection

Insights into evolution and coexistence of the colibactin- and yersiniabactin secondary metabolite determinants in enterobacterial populations

Insight into phenotypic and genotypic differences between vaginal Lactobacillus crispatus BC5 and Lactobacillus gasseri BC12 to unravel nutritional and stress factors influencing their metabolic activity

Functional analysis of colonization factor antigen I positive enterotoxigenic Escherichia coli identifies genes implicated in survival in water and host colonization

Phylogenetic context of Shiga toxin-producing Escherichia coli serotype O26:H11 in England

In vitro exploration of the Xanthomonas hortorum pv. vitians genome using transposon insertion sequencing and comparative genomics to discriminate between core and contextual essential genes

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Microreact: visualizing and sharing data for genomic epidemiology and phylogeography

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping

Completing bacterial genome assemblies with multiplex MinION sequencing

Emergence, molecular mechanisms and global spread of carbapenem-resistant Acinetobacter baumannii

Dynamic linkage of COVID-19 test results between Public Health England’s Second Generation Surveillance System and UK Biobank

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

On the (im)possibility of reconstructing plasmids from whole-genome short-read sequencing data