Microbial Genomics

Microbial Genomics

E-ISSN: 2057-5858

Microbial Genomics pioneers all areas of genome research spanning the breadth of microbial life including viruses, bacteria, archaea and microbial eukaryotes. We welcome articles showing novel insights, new applications, or innovative approaches using genomic data. Content ranges from comparative and functional genomics of model organisms to population-scale evolution, epidemiology and microbiome studies, and real-world genomics applications with clinical, veterinary or environmental relevance. See full journal scope

Editorial Board
Editor-in-Chief: Professor Kathryn Holt, Monash University, Australia and London School of Hygiene and Tropical Medicine, UK
Deputy Editor-in-Chief: Professor Samuel K. Sheppard, The Milner Centre for Evolution, University of Bath, UK
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Journal status	Active

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- Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
  
  Silvia Argimón, Khalil Abudahab, Richard J. E. Goater, Artemij Fedosejev, Jyothish Bhai, Corinna Glasner, Edward J. Feil, Matthew T. G. Holden, Corin A. Yeats, Hajo Grundmann, Brian G. Spratt and David M. Aanensen
- SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
  
  Andrew J. Page, Ben Taylor, Aidan J. Delaney, Jorge Soares, Torsten Seemann, Jacqueline A. Keane and Simon R. Harris
- ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping
  
  Johann Beghain, Antoine Bridier-Nahmias, Hervé Le Nagard, Erick Denamur and Olivier Clermont
- Identification of Klebsiella capsule synthesis loci from whole genome data
  
  Kelly L. Wyres, Ryan R. Wick, Claire Gorrie, Adam Jenney, Rainer Follador, Nicholas R. Thomson and Kathryn E. Holt
- ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
  
  Martin Hunt, Alison E Mather, Leonor Sánchez-Busó, Andrew J Page, Julian Parkhill, Jacqueline A Keane and Simon R Harris
- Completing bacterial genome assemblies with multiplex MinION sequencing
  
  Ryan R. Wick, Louise M. Judd, Claire L. Gorrie and Kathryn E. Holt
- chewBBACA: A complete suite for gene-by-gene schema creation and strain identification
  
  Mickael Silva, Miguel P. Machado, Diogo N. Silva, Mirko Rossi, Jacob Moran-Gilad, Sergio Santos, Mario Ramirez and João André Carriço
- MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  
  James Robertson and John H. E. Nash
- Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes
  
  Nicola De Maio, Liam P. Shaw, Alasdair Hubbard, Sophie George, Nicholas D. Sanderson, Jeremy Swann, Ryan Wick, Manal AbuOun, Emma Stubberfield, Sarah J. Hoosdally, Derrick W. Crook, Timothy E. A. Peto, Anna E. Sheppard, Mark J. Bailey, Daniel S. Read, Muna F. Anjum, A. Sarah Walker, Nicole Stoesser and on behalf of the REHAB consortium
- Emergence, molecular mechanisms and global spread of carbapenem-resistant Acinetobacter baumannii
  
  Mohammad Hamidian and Steven J. Nigro
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Microbial Genomics

Articles from the latest issue Latest Articles Rss Feed

Detection of plasmid contigs in draft genome assemblies using customized Kraken databases

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

Most read this month

Most cited this month Most Cited RSS feed

Microreact: visualizing and sharing data for genomic epidemiology and phylogeography

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

ClermonTyping: an easy-to-use and accurate in silico method for Escherichia genus strain phylotyping

Identification of Klebsiella capsule synthesis loci from whole genome data

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

Completing bacterial genome assemblies with multiplex MinION sequencing

chewBBACA: A complete suite for gene-by-gene schema creation and strain identification

MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

Emergence, molecular mechanisms and global spread of carbapenem-resistant Acinetobacter baumannii