- Volume 44, Issue 2, 1994
Volume 44, Issue 2, 1994
- Original Papers Relating To Systematic Bacteriology
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Sequence Determination of rRNA Genes of Pathogenic Vibrio Species and Whole-Cell Identification of Vibrio vulnificus with rRNA-Targeted Oligonucleotide Probes
More LessAbstractA comparative analysis of seven new 16S rRNA gene sequences of pathogenic Vibrio species with previously published vibrio sequences confirmed that Vibrio vulnificus represents a group that is not closely related to the core organisms of the genus Vibrio. In addition, we found that V. vulnificus, Listonella (Vibrio) anguillarum and Vibrio diazotrophicus branch off separately from the core group. A comparison of the 16S rRNA gene sequences of V. vulnificus strains belonging to biotypes 1 and 2 revealed that the sequences of all but four biotype 1 strains were identical to each other but slightly different (17 bases) from the sequences of the rest of the V. vulnificus strains investigated. In addition, the sequences of variable regions of the 23S rRNA genes of Vibrio fluvialis, Vibrio furnissii, Vibrio harveyi, Vibrio cholerae, and V. vulnificus C7184 and TW1 were determined, aligned, and compared with all available bacterial 23S rRNA sequences in order to search for specific target sites. As a result, four oligonucleotide probes specific for V. vulnificus were synthesized, and the specificities of these probes were evaluated by dot blot hybridization to membrane-bound RNAs from 21 V. vulnificus strains, 13 strains belonging to other Vibrio species, 61 strains belonging to species that are members of the alpha, beta, and gamma subclasses of the Proteobacteria, and 3 eucaryotic microorganisms. Two probes hybridized with all of the V. vulnificus strains tested, and the other two probes distinguished V. vulnificus biotype 1 strains from all other organisms. In situ identification of V vulnificus by using tetramethylrhodamine- or fluorescein-labelled oligonucleotides is now possible.
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Comparative Distribution and Taxonomic Value of Cellular Fatty Acids in Thirty-Three Genera of Anaerobic Gram-Negative Bacilli
More LessAbstractCellular fatty acid profiles were determined for species in 33 genera of anaerobic gram-negative bacilli and were confirmed to be a useful taxonomic tool. Most of the genera could be differentiated by visual inspection of their profiles. The three genus pairs that were most difficult to distinguish visually (Bacteroides and Prevotella, Pectinatus and Megamonas, and Serpulina and Bilophila) and the species of these genera were differentiated by the MIDI (Microbial ID, Inc.) identification system. Similarities in cellular fatty acid profiles may be correlated with similarities in other phenotypic characteristics, but more often there is no other obvious phenotypic relationship. Although medium components may not change the constituents detected or the ratios among the constituents detected for some species, identical medium changes may result in vast differences in the profiles obtained with other species. Thus, if a worker wishes to compare profiles of various taxa, it is essential that the same cultural and analytical conditions be used.
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Luteococcus japonicus gen. nov., sp. nov., a New Gram-Positive Coccus with LL-Diaminopimelic Acid in the Cell Wall
More LessAbstractA new gram-positive, nonmotile coccus is described. Strains IFO 12422T (T = type strain) and IFO 15385 in the Institute for Fermentation, Osaka, culture collection, which were isolated from soil and water, respectively, have the following chemotaxonomic characteristics: menaquinone MK-9(H4); G+C content of DNA of 67 mol%; and LL-diaminopimelic acid, alanine, glycine, and glutamic acid in a molar ratio of ca. 1:2:1:1 (type Α3γ). Mycolic acids are not present. The taxonomic characteristics of these organisms are different from those of previously described gram-positive, high-G+C-content cocci. The partial 16S rRNA sequence indicated that IFO 12422T represents a distinct line of descent among gram-positive bacteria with a high G+C content. The name Luteococcus japonicus gen. nov., sp. nov. is proposed. The type strain is strain IFO 12422.
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Transfer of Methanolobus sicilia. to the Genus Methanosarcin., Naming It Methanosarcina sicilia., and Emendation of the Genus Methanosarcin.
More LessA sequence analysis of the 16S rRNA of Methanolobus siciliae T4/MT (T = type strain) showed that this strain is closely related to members of the genus Methanosarcina, especially Methanosarcina acetivorans C2AT. Methanolobus siciliae T4/MT and HI350 were morphologically more similar to members of the genus Methanosarcina than to members of the genus Methanolobus in that they both formed massive cell aggregates with pseudosarcinae. Thus, we propose that Methanolobus siciliae should be transferred to the genus Methanosarcina as Methanosarcina siciliae.
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Reevaluating the Classification of Paracoccus halodenitrificans with Sequence Comparisons of 16S Ribosomal DNA
More LessThe results of phylogenetic analysis in which 16S ribosomal DNA sequences were compared confirmed previous chemotaxonomic data which suggested that Paracoccus halodentrificans is inappropriately placed in the genus Paracoccus, which belongs in the a subclass of the Proteobacteria. P. halodenitrificans should be placed in the family Halomonadaceae, which belongs in the y subclass of the Proteobacteria.
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A New Serovar in the Grippotyphosa Serogroup Comprising Leptospiral Isolates from Different Regions
Pulsed-field gel electrophoresis (PFGE) studies performed with leptospiral isolates led us to suspect the existence of a new serovar in the Grippotyphosa serogroup. The results obtained with reference serological techniques used in leptospiral identification, including cross-agglutination absorption and monoclonal antibody techniques, confirmed the existence of a new serovar exemplified by strain Dadas I. Four other isolates from different regions of the world were submitted for identification by PFGE and produced NotI restriction patterns similar to that of strain Dadas I. Our data demonstrate the power of PFGE for identifying leptospiral isolates. The name dadas is proposed for the new serovar.
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Evidence for a Close Phylogenetic Relationship between Melissococcus pluton, the Causative Agent of European Foulbrood Disease, and the Genus Enterococcus
J. CAI and M. D. COLLINSThe 16S rRNA gene sequence of Melissococcus pluton, the causative agent of European foulbrood disease, was determined in order to investigate the phylogenetic relationships between this organism and other low-G+C- content gram-positive bacteria. A comparative sequence analysis revealed that M. pluton is a close phylogenetic relative of the genus Enterococcus.
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- Original Papers Relating To The Systematics Of Yeasts
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Gene Arrangement and Sequence of the 5S rRNA in Filobasidiella neoformans (Cryptococcus neoformans) as a Phylogenetic Indicator
More LessWe cloned the 5S rRNA gene and determined its organization in the four genes encoding rRNAs in a ribosomal DNA repeat unit of Filobasidiella neoformans, the teleomorph of Cryptococcus neoformans. The 5S rRNA gene contained 118 nucleotides and was located 1 kb upstream from the 18S rRNA gene within the 8.6-kb fragment of the ribosomal DNA repeat unit. The sequence of the 5S rRNA gene from F. neoformans was more similar to the sequence of the 5S rRNA gene from Tremella mesenterica than to the sequences of the 5S rRNA genes from Filobasidium species. The arrangement of the rRNA genes in F. neoformans closely resembles the arrangement of the rRNA genes in mushrooms such as Schizophyllum commune, Agaricus bisporus, and Coprinus cinereus in that the 5S rRNA-coding region not only is located within the repeat unit that encodes the other rRNAs but also is transcribed in the same direction as the other rRNA genes. This is the first description of the arrangement of rRNA genes in a species belonging to the Heterobasidiomycetes.
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Arthroascus fermentans, a New Yeast Species Isolated from Soil in Taiwan
More LessAbstractArthroascus fermentans, a new arthrosporous, fermenting, ascogenous yeast species, is described. The three strains of the species included in this study were isolated from soil samples obtained from different orchards in Taiwan. The species is homothallic, and the major ubiquinone isoprenolog is Q-8. DNA hybridization and DNA base composition data indicate that A. fermentans is a species that is distinct from previously described Arthroascus species. The type strain of A. fermentans is strain 80D2303, which has been deposited in the Culture Collection and Research Center, Food Industry Research and Development Institute, Hsinchu, Taiwan, as strain CCRC 22530.
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- Matters Relating To The International Committee On Systematic Bacteriology
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Taxonomic Notes: Names for the Higher Taxa and Their Impact on the Code of Nomenclature of Bacteria †
More LessGeneral Consideration 5, chapter 1, of the International Code of Nomenclature of Bacteria (1990 Revision) states: “This Code of Nomenclature of Bacteria applies to all bacteria. The nomenclature of certain other microbial groups is provided for by other Codes: fungi and algae by the Botanical Code, protozoa by the Zoological Code, and viruses by the Virological Code when it is approved (see Appendix 1).” The extent of jurisdiction depends, therefore, on the usage applied to names of the highest taxa.
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- Letters To The Editor
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- Author's Correction
- Errata
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