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Abstract

A novel bacterial strain, designated MK52, was isolated from the phycosphere of . Strain MK52 is a Gram-stain-negative, pink-pigmented, rod-shaped, strictly aerobic bacterium. In 16S rRNA phylogenetic analysis, the MK52 strain was most closely related to RW1 (98.66 %) and UM2 (98.51 %). The genomic DNA G+C content of strain MK52 was calculated to be 65.5 mol%. The average nucleotide identity values of strain MK52 with RW1 and UM2 were 80.35 and 80.23 %, respectively, with digital DNA–DNA hybridization values of 23.6 and 22.9 %, respectively, and average amino acid identities of 75.59 and 75.79 %, respectively. The major isoprenoid quinone was Q-10, and the predominant polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and sphingoglycolipid. Fatty acid methyl ether analysis showed that summed feature 8 (C ω7 and/or C ω6) was the main cellular fatty acid in strain MK52. Strain MK52 cells grew at 21–34 °C (optimum, 30 °C), pH 5–8 (optimum, pH 7) and with 0–2 % (w/v) NaCl (optimum, 0.5 % NaCl). sp. nov. is proposed as a new species (=KCTC 72877=DSM 111424) based on its genotypic and phenotypic characteristics.

Funding
This study was supported by the:
  • National Institute of Biological Resources (Award NIBR202002108)
    • Principle Award Recipient: WoojunPark
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/content/journal/ijsem/10.1099/ijsem.0.005324
2022-04-21
2024-05-04
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References

  1. Francis IM, Jochimsen KN, De Vos P, van Bruggen AHC. Reclassification of rhizosphere bacteria including strains causing corky root of lettuce and proposal of Rhizorhapis suberifaciens gen. nov., comb. nov., Sphingobium mellinum sp. nov., Sphingobium xanthum sp. nov. and Rhizorhabdus argentea gen. nov., sp. nov. Int J Syst Evol Microbiol 2014; 64:1340–1350 [View Article]
    [Google Scholar]
  2. Kim M, Kang O, Zhang Y, Ren L, Chang X et al. Sphingoaurantiacus polygranulatus gen. nov., sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of the genera Sandarakinorhabdus, Polymorphobacter and Rhizorhabdus and the species Sandarakinorhabdus limnophila, Rhizorhabdus argentea and Sphingomonas wittichii. Int J Syst Evol Microbiol 2016; 66:91–100 [View Article] [PubMed]
    [Google Scholar]
  3. Takeuchi M, Hamana K, Hiraishi A. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 2001; 51:1405–1417 [View Article] [PubMed]
    [Google Scholar]
  4. Chen H, Jogler M, Tindall BJ, Klenk H-P, Rohde M et al. Sphingomonas starnbergensis sp. nov., isolated from a prealpine freshwater lake. Int J Syst Evol Microbiol 2013; 63:1017–1023 [View Article] [PubMed]
    [Google Scholar]
  5. Yao L, Zhang J-J, Yu L-L, Chen Q, Zhu J-C et al. Rhizorhabdus dicambivorans sp. nov., a dicamba-degrading bacterium isolated from compost. Int J Syst Evol Microbiol 2016; 66:3317–3323 [View Article] [PubMed]
    [Google Scholar]
  6. Nigam A, Jit S, Lal R. Sphingomonas histidinilytica sp. nov., isolated from a hexachlorocyclohexane dump site. Int J Syst Evol Microbiol 2010; 60:1038–1043 [View Article] [PubMed]
    [Google Scholar]
  7. Yabuuchi E, Yamamoto H, Terakubo S, Okamura N, Naka T et al. Proposal of Sphingomonas wittichii sp. nov. for strain RW1T, known as a dibenzo-p-dioxin metabolizer. Int J Syst Evol Microbiol 2001; 51:281–292 [View Article] [PubMed]
    [Google Scholar]
  8. Kim M, Shin B, Lee J, Park HY, Park W. Culture-independent and culture-dependent analyses of the bacterial community in the phycosphere of cyanobloom-forming Microcystis aeruginosa. Sci Rep 2019; 9:20416 [View Article] [PubMed]
    [Google Scholar]
  9. Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 2003; 31:3497–3500 [View Article] [PubMed]
    [Google Scholar]
  10. Kumar S, Nei M, Dudley J, Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 2008; 9:299–306 [View Article] [PubMed]
    [Google Scholar]
  11. Wagner J, Coupland P, Browne HP, Lawley TD, Francis SC et al. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification. BMC Microbiol 2016; 16:274 [View Article] [PubMed]
    [Google Scholar]
  12. Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  13. Meier-Kolthoff JP, Klenk HP, Göker M. Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age. Int J Syst Evol Microbiol 2014; 64:352–356 [View Article] [PubMed]
    [Google Scholar]
  14. Konstantinidis KT, Tiedje JM. Towards a genome-based taxonomy for prokaryotes. J Bacteriol 2005; 187:6258–6264 [View Article] [PubMed]
    [Google Scholar]
  15. Sigmon J. The Starch Hydrolysis Test American Society for Microbiology; 2008
    [Google Scholar]
  16. Kim M, Lee BH, Lee KE, Park W. Flavobacterium phycosphaerae sp. nov. isolated from the phycosphere of Microcystis aeruginosa. Int J Syst Evol Microbiol 2019; 71:004735 [View Article] [PubMed]
    [Google Scholar]
  17. Sasser M. Bacterial Identification by Gas Chromatographic Analysis of Fatty Acids Methyl Esters (GC-FAME). MIDI Technical Note 1990 p 10
    [Google Scholar]
  18. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  19. Jin L, Ko S-R, Ahn C-Y, Lee H-G, Oh H-M. Rhizobacter profundi sp. nov., isolated from freshwater sediment. Int J Syst Evol Microbiol 2016; 66:1926–1931 [View Article] [PubMed]
    [Google Scholar]
  20. Francis IM, Jochimsen KN, De Vos P, van Bruggen AHC. Reclassification of rhizosphere bacteria including strains causing corky root of lettuce and proposal of Rhizorhapis suberifaciens gen. nov., comb. nov., Sphingobium mellinum sp. nov., Sphingobium xanthum sp. nov. and Rhizorhabdus argentea gen. nov., sp. nov. Int J Syst Evol Microbiol 2014; 64:1340–1350 [View Article]
    [Google Scholar]
  21. van Bruggen AHC, Francis IM. Case investigation and forensic evidence for a new plant disease: the case of lettuce corky root. Plant Dis 2015; 99:300–309 [View Article] [PubMed]
    [Google Scholar]
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