1887

Abstract

A Gram-stain-positive strain, 8 H-2, was isolated from faeces of Reeves’ muntjac () barking deer in Taiwan. Cells of the strain were short rod-shaped, non-motile, non-haemolytic, asporogenous, facultatively anaerobic, heterofermentative and did not exhibit catalase and oxidase activities. Comparative analyses of 16S rRNA, and gene sequences demonstrated that the novel strain was a member of the genus . On the basis of 16S rRNA gene sequence similarities, the type strains of (99.2 %), (97.8 %), (97.6 %) and (97.3 %) were the closest neighbours to strain 8 H-2. The concatenated housekeeping gene sequence ( and ) similarities of 8 H-2 to closely related type strains were 72.5–84.9 %, respectively. The genomic DNA G+C content was 40.5 mol%. The average nucleotide identity and digital DNA–DNA hybridization values with these type strains were 70.2–75.4% and 25.1–30.1 %, respectively. Phenotypic and genotypic test results demonstrated that strain 8 H-2 represents a novel species belonging to the genus , for which the name sp. nov. is proposed. The type strain is 8 H-2 (=BCRC 81133=NBRC 113537).

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2020-01-02
2024-05-12
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References

  1. Parte AC. LPSN--list of prokaryotic names with standing in nomenclature. Nucleic Acids Res 2014; 42:D613–D616 [View Article]
    [Google Scholar]
  2. Fusco V, Quero GM, Cho GS, Kabisch J, Meske D et al. The genus Weissella: taxonomy, ecology and biotechnological potential. Front Microbiol 2015; 6:155 [View Article]
    [Google Scholar]
  3. Magnusson J, Jonsson H, Schnürer J, Roos S. Weissella soli sp. nov., a lactic acid bacterium isolated from soil. Int J Syst Evol Microbiol 2002; 52:831–834 [View Article]
    [Google Scholar]
  4. Nisiotou A, Dourou D, Filippousi ME, Banilas G, Tassou C. Weissella uvarum sp. nov., isolated from wine grapes. Int J Syst Evol Microbiol 2014; 64:3885–3890 [View Article]
    [Google Scholar]
  5. Tohno M, Kitahara M, Inoue H, Uegaki R, Irisawa T et al. Weissella oryzae sp. nov., isolated from fermented rice grains. Int J Syst Evol Microbiol 2013; 63:1417–1420 [View Article]
    [Google Scholar]
  6. Oh SJ, Shin N-R, Hyun D-W, Kim PS, Kim JY et al. Weissella diestrammenae sp. nov., isolated from the gut of a camel cricket (Diestrammena coreana). Int J Syst Evol Microbiol 2013; 63:2951–2956 [View Article]
    [Google Scholar]
  7. Björkroth KJ, Schillinger U, Holzapfel WH, Korkeala HJ, Vandamme P et al. Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples. Int J Syst Evol Microbiol 2002; 52:141–148 [View Article]
    [Google Scholar]
  8. Kamboj K, Vasquez A, Balada-Llasat JM. Identification and significance of Weissella species infections. Front Microbiol 2015; 6:1204 [View Article]
    [Google Scholar]
  9. Huang CH, Huang L, Chang MT, Chen KL. Establishment and application of an analytical in-house database (IHDB) for rapid discrimination of Bacillus subtilis group (BSG) using whole-cell MALDI-TOF MS technology. Mol Cell Probes 2016; 30:312–319 [View Article]
    [Google Scholar]
  10. Guu JR, Wang LT, Hamada M, Wang C, Lin RW et al. Lactobacillus bambusae sp. nov., isolated from traditional fermented ma bamboo shoots in Taiwan. Int J Syst Evol Microbiol 2018; 68:2424–2430 [View Article]
    [Google Scholar]
  11. Naser SM, Thompson FL, Hoste B, Gevers D, Dawyndt P et al. Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes. Microbiology 2005; 151:2141–2150 [View Article]
    [Google Scholar]
  12. Chao SH, Wu RJ, Watanabe K, Tsai YC. Diversity of lactic acid bacteria in suan-tsai and fu-tsai, traditional fermented mustard products of Taiwan. Int J Food Microbiol 2009; 135:203–210 [View Article]
    [Google Scholar]
  13. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403–410 [View Article]
    [Google Scholar]
  14. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article]
    [Google Scholar]
  15. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23:2947–2948 [View Article]
    [Google Scholar]
  16. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article]
    [Google Scholar]
  17. Chor B, Hendy MD, Snir S. Maximum likelihood Jukes-Cantor triplets: Analytic solutions. Mol Biol Evol 2006; 23:626–632 [View Article]
    [Google Scholar]
  18. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article]
    [Google Scholar]
  19. Rzhetsky A, Nei M. A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 1992; 9:945–967
    [Google Scholar]
  20. Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993; 10:512–526
    [Google Scholar]
  21. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425
    [Google Scholar]
  22. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article]
    [Google Scholar]
  23. Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S et al. The national center for biotechnology information's protein clusters database. Nucleic Acids Res 2009; 37:D216–D223 [View Article]
    [Google Scholar]
  24. Lee I, Ouk Kim Y, Park SC, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article]
    [Google Scholar]
  25. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article]
    [Google Scholar]
  26. Kandler O, Weiss N. Genus Lactobacillus Beijerinck 1901, 212AL . In Sneath PHA, Mair NS, Sharpe ME, Holt JG. (editors) Bergey’s Manual of Systematic Bacteriology 2 Baltimore: Williams & Wilkins; 1986 pp 1209–1234
    [Google Scholar]
  27. Hamada M, Yamamura H, Komukai C, Tamura T, Suzuki K et al. Luteimicrobium album sp. nov., a novel actinobacterium isolated from a lichen collected in Japan, and emended description of the genus Luteimicrobium . J Antibiot 2012; 65:427–431 [View Article]
    [Google Scholar]
  28. Nozawa Y, Sakai N, Arai K, Kawasaki Y, Harada K. Reliable and sensitive analysis of amino acids in the peptidoglycan of actinomycetes using the advanced Marfey's method. J Microbiol Methods 2007; 70:306–311 [View Article]
    [Google Scholar]
  29. Schleifer KH, Kandler O. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 1972; 36:407–477
    [Google Scholar]
  30. Schumann P. Peptidoglycan Structure. In Rainey F, Oren A. (editors) Taxonomy of Prokaryotes, Methods in Microbiology 38 London: Academic Press; 2011 pp 101–129
    [Google Scholar]
  31. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 1990; 20:16
    [Google Scholar]
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