1887

Abstract

A Gram-stain-negative and rod-shaped bacterial strain, 12-OD1, with rock phosphate solubilizing ability was isolated from agricultural soil in Hailun, Heilongjiang, PR China. The isolate was affiliated to the genus , based on 16S rRNA gene sequence alignments, having the highest similarities with 6 NM-7 (98.67 %), TSA1 (98.28 %), and NS9 (98.07 %), respectively. The DNA G+C content was 67.72 mol% and DNA–DNA hybridization showed low relatedness values (less than 47 %) between strain 12-OD1 and other phylogenetically related species of the genus . The predominant isoprenoid quinone was Q-8 and the polar lipid profile comprised diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. The major fatty acids were C cyclo (25.4 %), C (23.4 %) and summed feature 3 (Cω7 and/or C ω6) (22.5 %), which differentiates it from close relatives within the genus . Combined genetic, physiological and biochemical properties indicate that strain 12-OD1 is a novel species of the genus , for which the name sp. nov., is proposed, with the type strain 12-OD1 (=CCTCC AB 2016251=LMG 29956=KCTC 52513).

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2017-08-01
2024-05-08
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References

  1. La Scola B, Birtles RJ, Mallet MN, Raoult D. Massilia timonae gen. nov., sp. nov., isolated from blood of an immunocompromised patient with cerebellar lesions. J Clin Microbiol 1998; 36:2847–2852[PubMed]
    [Google Scholar]
  2. Altankhuu K, Kim J. Massilia pinisoli sp. nov., isolated from forest soil. Int J Syst Evol Microbiol 2016; 66: [View Article][PubMed]
    [Google Scholar]
  3. Du Y, Yu X, Wang G. Massilia tieshanensis sp. nov., isolated from mining soil. Int J Syst Evol Microbiol 2012; 62:2356–2362 [View Article][PubMed]
    [Google Scholar]
  4. Embarcadero-Jiménez S, Peix Á, Igual JM, Rivera-Orduña FN, Tao Wang E. Massilia violacea sp. nov., isolated from riverbank soil. Int J Syst Evol Microbiol 2016; 66:707–711 [View Article][PubMed]
    [Google Scholar]
  5. Feng GD, Yang SZ, Li HP, Zhu HH. Massilia putida sp. nov., a dimethyl disulfide-producing bacterium isolated from wolfram mine tailing. Int J Syst Evol Microbiol 2016; 66:50–55 [View Article][PubMed]
    [Google Scholar]
  6. Kong BH, Li YH, Liu M, Liu Y, Li CL et al. Massilia namucuonensis sp. nov., isolated from a soil sample. Int J Syst Evol Microbiol 2013; 63:352–357 [View Article][PubMed]
    [Google Scholar]
  7. Luo X, Xie Q, Wang J, Pang H, Fan J et al. Massilia lurida sp. nov., isolated from soil. Int J Syst Evol Microbiol 2013; 63:2118–2123 [View Article][PubMed]
    [Google Scholar]
  8. Rodríguez-Díaz M, Cerrone F, Sánchez-Peinado M, Santacruz-Calvo L, Pozo C et al. Massilia umbonata sp. nov., able to accumulate poly-β-hydroxybutyrate, isolated from a sewage sludge compost-soil microcosm. Int J Syst Evol Microbiol 2014; 64:131–137 [View Article][PubMed]
    [Google Scholar]
  9. Wang J, Zhang J, Pang H, Zhang Y, Li Y et al. Massilia flava sp. nov., isolated from soil. Int J Syst Evol Microbiol 2012; 62:580–585 [View Article][PubMed]
    [Google Scholar]
  10. Zhang YQ, Li WJ, Zhang KY, Tian XP, Jiang Y et al. Massilia dura sp. nov., Massilia albidiflava sp. nov., Massilia plicata sp. nov. and Massilia lutea sp. nov., isolated from soils in China. Int J Syst Evol Microbiol 2006; 56:459–463 [View Article][PubMed]
    [Google Scholar]
  11. Zul D, Wanner G, Overmann J. Massilia brevitalea sp. nov., a novel betaproteobacterium isolated from lysimeter soil. Int J Syst Evol Microbiol 2008; 58:1245–1251 [View Article][PubMed]
    [Google Scholar]
  12. Gallego V, Sánchez-Porro C, García MT, Ventosa A. Massilia aurea sp. nov., isolated from drinking water. Int J Syst Evol Microbiol 2006; 56:2449–2453 [View Article][PubMed]
    [Google Scholar]
  13. Orthová I, Kämpfer P, Glaeser SP, Kaden R, Busse HJ. Massilia norwichensis sp. nov., isolated from an air sample. Int J Syst Evol Microbiol 2015; 65:56–64 [View Article][PubMed]
    [Google Scholar]
  14. Weon HY, Kim BY, Hong SB, Jeon YA, Koo BS et al. Massilia niabensis sp. nov. and Massilia niastensis sp. nov., isolated from air samples. Int J Syst Evol Microbiol 2009; 59:1656–1660 [View Article][PubMed]
    [Google Scholar]
  15. Weon HY, Kim BY, Son JA, Jang HB, Hong SK et al. Massilia aerilata sp. nov., isolated from an air sample. Int J Syst Evol Microbiol 2008; 58:1422–1425 [View Article][PubMed]
    [Google Scholar]
  16. Weon HY, Yoo SH, Kim SJ, Kim YS, Anandham R et al. Massilia jejuensis sp. nov. and Naxibacter suwonensis sp. nov., isolated from air samples. Int J Syst Evol Microbiol 2010; 60:1938–1943 [View Article][PubMed]
    [Google Scholar]
  17. Guo B, Liu Y, Gu Z, Shen L, Liu K et al. Massilia psychrophila sp. nov., isolated from an ice core. Int J Syst Evol Microbiol 2016; 66: [View Article][PubMed]
    [Google Scholar]
  18. Shen L, Liu Y, Gu Z, Xu B, Wang N et al. Massilia eurypsychrophila sp. nov. a facultatively psychrophilic bacteria isolated from ice core. Int J Syst Evol Microbiol 2015; 65:2124–2129 [View Article][PubMed]
    [Google Scholar]
  19. Shen L, Liu Y, Wang N, Yao T, Jiao N et al. Massilia yuzhufengensis sp. nov., isolated from an ice core. Int J Syst Evol Microbiol 2013; 63:1285–1290 [View Article][PubMed]
    [Google Scholar]
  20. Kämpfer P, Lodders N, Martin K, Falsen E. Massilia oculi sp. nov., isolated from a human clinical specimen. Int J Syst Evol Microbiol 2012; 62:364–369 [View Article][PubMed]
    [Google Scholar]
  21. Bassas-Galia M, Nogales B, Arias S, Rohde M, Timmis KN et al. Plant original Massilia isolates producing polyhydroxybutyrate, including one exhibiting high yields from glycerol. J Appl Microbiol 2012; 112:443–454 [View Article][PubMed]
    [Google Scholar]
  22. Cerrone F, Sánchez-Peinado Mdelm, Rodríguez-Díaz M, González-López J, Pozo C. PHAs production by strains belonging to Massilia genus from starch. Starch 2011; 63:236–240 [View Article]
    [Google Scholar]
  23. Kochian LV. Plant nutrition: rooting for more phosphorus. Nature 2012; 488:466–467 [View Article][PubMed]
    [Google Scholar]
  24. Vance CP, Uhde-Stone C, Allan DL. Phosphorus acquisition and use: critical adaptations by plants for securing a nonrenewable resource. New Phytologist 2003; 157:423–447 [View Article]
    [Google Scholar]
  25. Elser J, Bennett E. Phosphorus cycle: a broken biogeochemical cycle. Nature 2011; 478:29–31 [View Article][PubMed]
    [Google Scholar]
  26. Richardson AE, Simpson RJ. Soil microorganisms mediating phosphorus availability update on microbial phosphorus. Plant Physiol 2011; 156:989–996 [View Article][PubMed]
    [Google Scholar]
  27. Xuan Y, Xu L, Tian HZ, Liu GH, Cui M. Isolation and characterization of phosphate-solubilizing bacteria from walnut and their effect on growth and phosphorus mobilization. Biol Fert Soils 2011; 47:437–446 [CrossRef]
    [Google Scholar]
  28. Nautiyal CS. An efficient microbiological growth medium for screening phosphate solubilizing microorganisms. FEMS Microbiol Lett 1999; 170:265–270 [View Article][PubMed]
    [Google Scholar]
  29. Burdash NM, Bennett CE, Glassman AB. Bacterial gram staining by conventional and strip methods. Health Lab Sci 1977; 14:282–283[PubMed]
    [Google Scholar]
  30. Murphy J, Riley JP. A modified single solution method for the determination of phosphate in natural waters. Anal Chim Acta 1962; 27:31–36 [View Article]
    [Google Scholar]
  31. Ding MY, Chen PR, Luo G-A. Simultaneous determination of organic acids and inorganic anions in tea by ion chromatography. J Chromatogr A 1997; 764:341–345 [View Article]
    [Google Scholar]
  32. Blackwood CB, Marsh T, Kim SH, Paul EA. Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities. Appl Environ Microbiol 2003; 69:926–932 [View Article][PubMed]
    [Google Scholar]
  33. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 2013; 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  34. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23:2947–2948 [View Article][PubMed]
    [Google Scholar]
  35. Tamaoka J, Komagata K. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 1984; 25:125–128 [View Article]
    [Google Scholar]
  36. Huss VA, Festl H, Schleifer KH. Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 1983; 4:184–192 [View Article][PubMed]
    [Google Scholar]
  37. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al. International committee on systematic bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464 [CrossRef]
    [Google Scholar]
  38. Breznak JA, Costilow RN. Physicochemical factors in growth. In Philipp G. (editor) Methods for General and Molecular Microbiology American Society of Microbiology 2007 pp 309–329
    [Google Scholar]
  39. Hiraishi A. Respiratory quinone profiles as tools for identifying different bacterial populations in activated sludge. J Gen Appl Microbiol 1988; 34:39–56 [View Article]
    [Google Scholar]
  40. Rouser G, Fkeischer S, Yamamoto A. Two dimensional thin layer chromatographic separation of polar lipids and determination of phospholipids by phosphorus analysis of spots. Lipids 1970; 5:494–496 [View Article][PubMed]
    [Google Scholar]
  41. Athalye M, Noble WC, Minnikin DE. Analysis of cellular fatty acids by gas chromatography as a tool in the identification of medically important coryneform bacteria. J Appl Bacteriol 1985; 58:507–512 [View Article][PubMed]
    [Google Scholar]
  42. Kim J. Massilia kyonggiensis sp. nov., isolated from forest soil in Korea. J Microbiol 2014; 52:378–383 [View Article][PubMed]
    [Google Scholar]
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