1887

Abstract

A novel isolate belonging to the genus , strain YIM 47672, was obtained from soil from Hainan, an island in China. The characterization of this isolate was performed by using a polyphasic approach. The strain formed long spore chains in the aerial mycelia. The cell wall contained -diaminopimelic acid, traces of -diaminopimelic acid and glycine. Whole-cell hydrolysates contained galactose and xylose. The phospholipid was of type II. The 16S rRNA gene sequence similarities for YIM 47672 with respect to the most closely related type strains of species of the genus were less than 96.3 %. Therefore strain YIM 47672 represents a novel member of the genus , for which the name sp. nov. is proposed. The type strain is YIM 47672 (=CCTCC AA 205017=DSM 41900).

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2007-11-01
2019-10-16
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References

  1. Berdy, J. ( 2005; ). Bioactive microbial metabolites, a personal view. J Antibiot (Tokyo) 58, 1–26.[CrossRef]
    [Google Scholar]
  2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. ( 1977; ). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.[CrossRef]
    [Google Scholar]
  3. Dong, X. Z. & Cai, M. Y. ( 2001; ). Manual of Systematics and Identification of General Bacteria. Beijing: Science Press.
  4. Felsenstein, J. ( 1985; ). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef]
    [Google Scholar]
  5. Gause, G. F., Preobrazhenskaya, T. P., Sveshnikova, M. A., Terekhova, L. P. & Maximova, T. S. ( 1983; ). A guide for the determination of actinomycetes. Genera Streptomyces, Streptoverticillium, and Chaina. Moscow: Nauka.
  6. Gause, G. F., Preobrazhenskaya, T. P., Sveshnikova, M. A., Terekhova, L. P. & Maximova, T. S. ( 1986; ). Streptomyces carpaticus sp. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 22. Int J Syst Bacteriol 36, 573–576.[CrossRef]
    [Google Scholar]
  7. Goodfellow, M. ( 1971; ). Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69, 33–80.[CrossRef]
    [Google Scholar]
  8. Gordon, R. E. & Mihm, J. M. ( 1962; ). The type species of the genus Nocardia. J Gen Microbiol 27, 1–10.[CrossRef]
    [Google Scholar]
  9. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. ( 1974; ). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strains. Int J Syst Bacteriol 24, 54–63.[CrossRef]
    [Google Scholar]
  10. Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. ( 2005; ). PHYML Online–a web server for fast maximum likelihood-based phylogenetic inference (Web Server issue). Nucleic Acids Res 33, W557–W559.[CrossRef]
    [Google Scholar]
  11. Hayakawa, M. & Nonomura, H. ( 1987; ). Humic acid-vitamin agar, a new medium for selective isolation of soil actinomycetes. J Ferment Technol 65, 501–509.[CrossRef]
    [Google Scholar]
  12. Jiang, Y., Duan, S. R., Tang, S. K., Cheng, H. H., Li, W. J. & Xu, L. H. ( 2006; ). Isolation methods of rare actinomycetes. Microbiology [English translation of Microbiology (Beijing)] 33, 181–183.
    [Google Scholar]
  13. Kämpfer, P. & Kroppenstedt, R. M. ( 1996; ). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989–1005.[CrossRef]
    [Google Scholar]
  14. Kataoka, M., Ueda, K., Kudo, T., Seki, T. & Yoshida, T. ( 1997; ). Application of the variable region in 16S rDNA to create an index for rapid species identification in the genus Streptomyces. FEMS Microbiol Lett 151, 249–255.[CrossRef]
    [Google Scholar]
  15. Kelly, K. L. ( 1964; ). Inter-Society Color Council – National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
  16. Kim, S. B., Lonsdale, J., Seong, C. N. & Goodfellow, M. ( 2003; ). Streptacidiphilus gen. nov., acidophilic actinomycetes with wall chemotype I and emendation of the family Streptomycetaceae (Waksman and Henrici (1943)AL) emend. Rainey et al. 1997. Antonie van Leeuwenhoek 83, 107–116.[CrossRef]
    [Google Scholar]
  17. Kim, H. J., Lee, S. C. & Hwang, B. K. ( 2006; ). Streptomyces cheonanensis sp. nov., a novel streptomycete with antifungal activity. Int J Syst Evol Microbiol 56, 471–475.[CrossRef]
    [Google Scholar]
  18. Kimura, M. ( 1980; ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.[CrossRef]
    [Google Scholar]
  19. Kumar, S., Tamura, K. & Nei, M. ( 2004; ). mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150–163.[CrossRef]
    [Google Scholar]
  20. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. ( 1977; ). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249–260.[CrossRef]
    [Google Scholar]
  21. Lechevalier, M. P., Stern, A. E. & Lechevalier, H. A. ( 1981; ). Phospholipids in the taxonomy of actinomycetes. In Actinomycetes, pp. 11–116. Edited by K. P. Schaal & G. Pulverer. New York: Gustav Fischer.
  22. Li, W. J., Zhang, Y. Q., Tang, S. K., Xu, P., Xu, L. H. & Jiang, C. L. ( 2005; ). Streptomyces sodiiphilus sp. nov., a novel alkaliphilic actinomycete. Int J Syst Evol Microbiol 55, 1329–1333.[CrossRef]
    [Google Scholar]
  23. Marmur, J. ( 1961; ). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208–218.[CrossRef]
    [Google Scholar]
  24. Perrière, G. & Gouy, M. ( 1996; ). WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364–369.[CrossRef]
    [Google Scholar]
  25. Saitou, N. & Nei, M. ( 1987; ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
    [Google Scholar]
  26. Sasser, M. ( 1990; ). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16
    [Google Scholar]
  27. Shirling, E. B. & Gottlieb, D. ( 1966; ). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313–340.[CrossRef]
    [Google Scholar]
  28. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. ( 1997; ). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479–491.[CrossRef]
    [Google Scholar]
  29. Staneck, J. L. & Roberts, G. D. ( 1974; ). Simplified approach to identification of aerobic actinomycetes by thin layer chromatography. Appl Microbiol 28, 226–231.
    [Google Scholar]
  30. Tamaoka, J. & Komagata, K. ( 1984; ). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef]
    [Google Scholar]
  31. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. ( 1997; ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef]
    [Google Scholar]
  32. Tsukamura, M. ( 1966; ). Adansonian classification of mycobacteria. J Gen Microbiol 45, 253–273.[CrossRef]
    [Google Scholar]
  33. Waksman, S. A. & Henrici, A. T. ( 1943; ). The nomenclature and classification of the actinomycetes. J Bacteriol 46, 337–341.
    [Google Scholar]
  34. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. ( 1983; ). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743–1813.
    [Google Scholar]
  35. Zhang, Z., Wang, Y. & Ruan, J. ( 1997; ). A proposal to revive the genus Kitasatospora (Omura, Takahashi, Iwai, and Tanaka 1982). Int J Syst Bacteriol 47, 1048–1054.[CrossRef]
    [Google Scholar]
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