1887

Abstract

A Gram-staining-negative, non-pigmented, strictly aerobic, rod-shaped, non-spore-forming, non-motile bacterium, devoid of bacteriochlorophyll, designated strain CC-AMW-E, was isolated from surface seawater off the coast at Kending, Taiwan. Strain CC-AMW-E shared 95.7 and 93.9 % 16S rRNA gene sequence similarity, respectively, with the type strains of the type species of the genera ( SW-277) and ( EL-172). The predominant (>75 % of the total) fatty acid was summed feature 8 (Cω6 and/or Cω7). The polar lipid profile included major amounts of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine and an unidentified aminolipid. In addition, moderate amounts of an unidentified lipid and trace amounts of an unidentified phospholipid were detected. The DNA G+C content was 67.9 mol%. Ubiquinone Q-10 was the sole respiratory quinone. Based on its phylogenetic distinctiveness and distinguishing phenotypic characteristics (in particular its polar lipid pattern), we conclude that strain CC-AMW-E represents a novel genus and species of the family , for which the name gen. nov., sp. nov. is proposed. The type strain of is CC-AMW-E ( = JCM 18819 = BCRC 80549). In addition, an emended description of the genus Yoon 2007 and the reclassification of Tan 2009 as gen. nov., comb. nov. (type strain Y-2 = MCCC 1A00107 = LMG 24574 = CGMCC 1.7081) are proposed.

Funding
This study was supported by the:
  • Ministry of Education, Taiwan, ROC
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2014-08-01
2024-04-26
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References

  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. ( 1990 ). Basic local alignment search tool. . J Mol Biol 215, 403410. [View Article] [PubMed]
    [Google Scholar]
  2. Bernardet J. F., Nakagawa Y., Holmes B. Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes ( 2002 ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52, 10491070. [View Article] [PubMed]
    [Google Scholar]
  3. Collins M. D. ( 1985 ). Analysis of isoprenoid quinones. . Methods Microbiol 18, 329366. [View Article]
    [Google Scholar]
  4. Embley T. M., Wait R. ( 1994 ). Structural lipids of eubacteria. . In Chemical Methods in Prokaryotic Systematics, pp. 121161. Edited by Goodfellow M., O’Donnell A. G. . Chichester:: Wiley;.
    [Google Scholar]
  5. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368376. [View Article] [PubMed]
    [Google Scholar]
  6. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783791. [View Article]
    [Google Scholar]
  7. Fitch W. M. ( 1971 ). Towards defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406416. [View Article]
    [Google Scholar]
  8. Garrity G. M., Bell J. A., Lilburn T. ( 2005 ). Family I. Rhodobacteraceae fam. nov.. In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 2C, p. 161. Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. . New York:: Springer;.
    [Google Scholar]
  9. GCG ( 1995 ). Wisconsin Package Version 8.1 Program Manual. Madison, WI:: Genetics Computer Group;.
    [Google Scholar]
  10. Hameed A., Shahina M., Lin S.-Y., Cho J. C., Lai W.-A., Young C.-C. ( 2013 ). Kordia aquimaris sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from surface seawater, and emended description of the genus Kordia . . Int J Syst Evol Microbiol 63, 47904796. [View Article] [PubMed]
    [Google Scholar]
  11. Hameed A., Shahina M., Lin S.-Y., Lai W.-A., Hsu Y.-H., Liu Y.-C., Young C.-C. ( 2014 ). Aquibacter zeaxanthinifaciens gen. nov., sp. nov., a zeaxanthin-producing bacterium of the family Flavobacteriaceae isolated from surface seawater, and emended descriptions of the genera Aestuariibaculum and Gaetbulibacter . . Int J Syst Evol Microbiol 64, 138145. [View Article] [PubMed]
    [Google Scholar]
  12. Harwati T. U., Kasai Y., Kodama Y., Susilaningsih D., Watanabe K. ( 2009 ). Tropicibacter naphthalenivorans gen. nov., sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from Semarang Port in Indonesia. . Int J Syst Evol Microbiol 59, 392396. [View Article] [PubMed]
    [Google Scholar]
  13. Heiner C. R., Hunkapiller K. L., Chen S. M., Glass J. I., Chen E. Y. ( 1998 ). Sequencing multimegabase-template DNA with BigDye terminator chemistry. . Genome Res 8, 557561.[PubMed]
    [Google Scholar]
  14. Iwaki H., Yasukawa N., Fujioka M., Takada K., Hasegawa Y. ( 2013 ). Isolation and characterization of a marine cyclohexylacetate-degrading bacterium Lutimaribacter litoralis sp. nov., and reclassification of Oceanicola pacificus as Lutimaribacter pacificus comb. nov.. Curr Microbiol 66, 588593. [View Article] [PubMed]
    [Google Scholar]
  15. Kämpfer P., Kroppenstedt R. M. ( 1996 ). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. . Can J Microbiol 42, 9891005. [View Article]
    [Google Scholar]
  16. Kim O.-S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  17. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111120. [View Article] [PubMed]
    [Google Scholar]
  18. Labrenz M., Collins M. D., Lawson P. A., Tindall B. J., Schumann P., Hirsch P. ( 1999 ). Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. . Int J Syst Bacteriol 49, 137147. [View Article] [PubMed]
    [Google Scholar]
  19. Lafay B., Ruimy R., Rausch de Traubenberg C., Breittmayer V., Gauthier M. J., Christen R. ( 1995 ). Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima . . Int J Syst Bacteriol 45, 290296. [View Article] [PubMed]
    [Google Scholar]
  20. Lin S.-Y., Hameed A., Liu Y.-C., Hsu Y.-H., Lai W.-A., Shen F.-T., Young L.-S., Tsai C.-F., Young C.-C. ( 2013 ). Aureimonas ferruginea sp. nov. and Aureimonas rubiginis sp. nov., two siderophore-producing bacteria isolated from rusty iron plates. . Int J Syst Evol Microbiol 63, 24302435. [View Article] [PubMed]
    [Google Scholar]
  21. Martens T., Heidorn T., Pukall R., Simon M., Tindall B. J., Brinkhoff T. ( 2006 ). Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingera . . Int J Syst Evol Microbiol 56, 12931304. [View Article] [PubMed]
    [Google Scholar]
  22. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159167. [View Article]
    [Google Scholar]
  23. Minnikin D. E., O’Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233241. [View Article]
    [Google Scholar]
  24. Montero-Calasanz M. C., Göker M., Rohde M., Spröer C., Schumann P., Busse H.-J., Schmid M., Tindall B. J., Klenk H.-P., Camacho M. ( 2013 ). Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium . . Int J Syst Evol Microbiol 63, 43864395. [View Article] [PubMed]
    [Google Scholar]
  25. Murray R. G. E., Doetsch R. N., Robinow C. F. ( 1994 ). Determinative and cytological light microscopy. . In Methods for General and Molecular Bacteriology, pp. 2141. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  26. Rüger H. J., Höfle M. G. ( 1992 ). Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev.. Int J Syst Bacteriol 42, 133143. [View Article] [PubMed]
    [Google Scholar]
  27. Ruiz-Ponte C., Cilia V., Lambert C., Nicolas J. L. ( 1998 ). Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus . . Int J Syst Bacteriol 48, 537542. [View Article] [PubMed]
    [Google Scholar]
  28. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  29. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids. . USFCC Newsl 20, 16.
    [Google Scholar]
  30. Schaefer J. K., Goodwin K. D., McDonald I. R., Murrell J. C., Oremland R. S. ( 2002 ). Leisingera methylohalidivorans gen. nov., sp. nov., a marine methylotroph that grows on methyl bromide. . Int J Syst Evol Microbiol 52, 851859. [View Article] [PubMed]
    [Google Scholar]
  31. Shahina M., Hameed A., Lin S.-Y., Hsu Y.-H., Liu Y.-C., Cheng I.-C., Lee M.-R., Lai W.-A., Lee R.-J., Young C.-C. ( 2013 ). Sphingomicrobium astaxanthinifaciens sp. nov., an astaxanthin-producing glycolipid-rich bacterium isolated from surface seawater and emended description of the genus Sphingomicrobium . . Int J Syst Evol Microbiol 63, 34153422. [View Article] [PubMed]
    [Google Scholar]
  32. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  33. Suzuki T., Muroga Y., Takahama M., Nishimura Y. ( 1999 ). Roseivivax halodurans gen. nov., sp. nov. and Roseivivax halotolerans sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from a saline lake. . Int J Syst Bacteriol 49, 629634. [View Article] [PubMed]
    [Google Scholar]
  34. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  35. Tan T., Wang B., Shao Z. ( 2009 ). Donghicola xiamenensis sp. nov., a marine bacterium isolated from seawater of the Taiwan Strait in China. . Int J Syst Evol Microbiol 59, 11431147. [View Article] [PubMed]
    [Google Scholar]
  36. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 48764882. [View Article] [PubMed]
    [Google Scholar]
  37. Tindall B. J., Rosselló-Móra R., Busse H.-J., Ludwig W., Kämpfer P. ( 2010 ). Notes on the characterization of prokaryote strains for taxonomic purposes. . Int J Syst Evol Microbiol 60, 249266. [View Article] [PubMed]
    [Google Scholar]
  38. Uchino Y., Hirata A., Yokota A., Sugiyama J. ( 1998 ). Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev.. J Gen Appl Microbiol 44, 201210. [View Article] [PubMed]
    [Google Scholar]
  39. Watts D., MacBeath J. R. ( 2001 ). Automated fluorescent DNA sequencing on the ABI PRISM 310 Genetic Analyzer. . Methods Mol Biol 167, 153170.[PubMed]
    [Google Scholar]
  40. Yoon J.-H., Kang S.-J., Oh T.-K. ( 2007 ). Donghicola eburneus gen. nov., sp. nov., isolated from seawater of the East Sea in Korea. . Int J Syst Evol Microbiol 57, 7376. [View Article] [PubMed]
    [Google Scholar]
  41. Yoon J.-H., Kang S.-J., Lee J.-S., Oh T.-K. ( 2009 ). Lutimaribacter saemankumensis gen. nov., sp. nov., isolated from a tidal flat of the Yellow Sea. . Int J Syst Evol Microbiol 59, 4852. [View Article] [PubMed]
    [Google Scholar]
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