1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 61, Issue 2

sp. nov., isolated from mountain soil Free

Abstract

A Gram-positive bacterium (strain CC-YMP-6) was isolated from soil samples collected from Yang-Ming Mountain, Taiwan. On the basis of 16S rRNA gene sequence analysis, strain CC-YMP-6 clearly belonged to the genus and was most closely related to the type strains of (96.2 % similarity) and (96.3 %). The predominant isoprenoid quinone was menaquinone MK-7 and the polar lipid profile was composed of the major components diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and one unidentified phospholipid plus moderate amounts of two unidentified aminophospholipids and a phospholipid. The polyamine pattern comprised spermidine as the single major component with spermine and putrescine present in minor amounts. The major fatty acids of strain CC-YMP-6 were iso-C and anteiso-C. The results of physiological and biochemical tests allowed the clear phenotypic differentiation of strain CC-YMP-6 from all recognized species of the genus . Strain CC-YMP-6 is therefore considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is CC-YMP-6 (=DSM 22952=CCM 7714).

  • Published Online:
SGM
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.020974-0
2011-02-01
2023-12-06
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/61/2/275.html?itemId=/content/journal/ijsem/10.1099/ijs.0.020974-0&mimeType=html&fmt=ahah

References

  1. Altenburger P., Kämpfer P., Makristathis A., Lubitz W., Busse H.-J. 1996; Classification of bacteria isolated from a medieval wall painting. J Biotechnol 47:39–52 [CrossRef]
     [Google Scholar]
  2. Altenburger P., Kämpfer P., Akimov V. N., Lubitz W., Busse H.-J. 1997; Polyamine distribution in actinomycetes with group B peptidoglycan and species of the genera Brevibacterium , Corynebacterium and Tsukamurella . Int J Syst Bacteriol 47:270–277 [CrossRef]
     [Google Scholar]
  3. An S. Y., Asahara M., Goto K., Kasai H., Yokota A. 2007; Virgibacillus halophilus sp. nov., spore-forming bacteria isolated from soil in Japan. Int J Syst Evol Microbiol 57:1607–1611 [CrossRef]
     [Google Scholar]
  4. Arahal D. R., Márquez M. C., Volcani B. E., Schleifer K. H., Ventosa A. 1999; Bacillus marismortui sp. nov., a new moderately halophilic species from the Dead Sea. Int J Syst Bacteriol 49:521–530 [CrossRef]
     [Google Scholar]
  5. Arahal D. R., Márquez M. C., Volcani B. E., Schleifer K. H., Ventosa A. 2000; Reclassification of Bacillus marismortui as Salibacillus marismortui comb. nov. Int J Syst Evol Microbiol 50:1501–1503 [CrossRef]
     [Google Scholar]
  6. Busse H.-J., Auling G. 1988; Polyamine pattern as a chemotaxonomic marker within the Proteobacteria . Syst Appl Microbiol 11:1–8 [CrossRef]
     [Google Scholar]
  7. Carrasco I. J., Márquez C. M., Ventosa A. 2009; Virgibacillus salinus sp. nov., a moderately halophilic bacterium from sediment of a saline lake. Int J Syst Evol Microbiol 59:3068–3073 [CrossRef]
     [Google Scholar]
  8. Chen Y. G., Cui X. L., Fritze D., Chai L. H., Schumann P., Wen M. L., Wang Y. X., Xu L. H., Jiang C. L. 2008; Virgibacillus kekensis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 58:647–653 [CrossRef]
     [Google Scholar]
  9. Chen Y. G., Cui X. L., Wang Y. X., Zhang Y. Q., Tang S. K., Li W. J., Liu Z. X., Wen M. L., Peng Q. 2009; Virgibacillus sediminis sp. nov., a moderately halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 59:2058–2063 [CrossRef]
     [Google Scholar]
  10. Garabito M. J., Arahal D. R., Mellado E., Márquez M. C., Ventosa A. 1997; Bacillus salexigens sp. nov., a new moderately halophilic Bacillus species. Int J Syst Bacteriol 47:735–741 [CrossRef]
     [Google Scholar]
  11. Hamana K., Akiba T., Uchino F., Matsuzaki S. 1989; Distribution of spermine in bacilli and lactic bacteria. Can J Microbiol 35:450–455 [CrossRef]
     [Google Scholar]
  12. Hamana K., Hamana H., Niitsu M., Samejima K., Sakane T., Yokota A. 1993; Tertiary and quaternary branched polyamines distributed in thermophilic Saccharococcus and Bacillus . Microbios 75:23–32
     [Google Scholar]
  13. Heyndrickx M., Lebbe L., Kersters K., De Vos P., Forsyth G., Logan N. A. 1998; Virgibacillus : a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus . Int J Syst Bacteriol 48:99–106 [CrossRef]
     [Google Scholar]
  14. Heyndrickx M., Lebbe L., Kersters K., Hoste B., De Wachter R., De Vos P., Forsyth G., Logan N. A. 1999; Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al . 1998. Int J Syst Bacteriol 49:1083–1090 [CrossRef]
     [Google Scholar]
  15. Heyrman J., Logan N. A., Busse H. J., Balcaen A., Lebbe L., Rodriguez-Diaz M., Swings J., De Vos P. 2003; Virgibacillus carmonensis sp. nov., Virgibacillus necropolis sp. nov. and Virgibacillus picturae sp. nov., three novel species isolated from deteriorated mural paintings, transfer of the species of the genus Salibacillus to Virgibacillus , as Virgibacillus marismortui comb. nov. and Virgibacillus salexigens comb. nov., and emended description of the genus Virgibacillus . Int J Syst Evol Microbiol 53:501–511 [CrossRef]
     [Google Scholar]
  16. Hua N. P., Hamza-Chaffai A., Vreeland R. H., Isoda H., Naganuma T. 2008; Virgibacillus salarius sp. nov., a halophilic bacterium isolated from a Saharan salt lake. Int J Syst Evol Microbiol 58:2409–2414 [CrossRef]
     [Google Scholar]
  17. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [CrossRef]
     [Google Scholar]
  18. Kämpfer P., Steiof M., Dott W. 1991; Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21:227–251 [CrossRef]
     [Google Scholar]
  19. Kämpfer P., Dreyer U., Neef A., Dott W., Busse H.-J. 2003; Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53:93–97 [CrossRef]
     [Google Scholar]
  20. Kämpfer P., Lodders N., Warfolomeow I., Busse H.-J. 2009; Tessaracoccus lubricantis sp. nov. isolated from a metalworking fluid. Int J Syst Evol Microbiol 59:1545–1549 [CrossRef]
     [Google Scholar]
  21. Kämpfer P., Falsen E., Lodders N., Schumann P. 2010; Sporosarcina contaminans sp. nov., and Sporosarcina thermotolerans sp. nov., two novel endospore-forming species. Int J Syst Evol Microbiol 60:1353–1357 [CrossRef]
     [Google Scholar]
  22. Lee J. S., Lim J. M., Lee K. C., Lee J. C., Park Y. H., Kim C. J. 2006; Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. Int J Syst Evol Microbiol 56:251–257 [CrossRef]
     [Google Scholar]
  23. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar Buchner A., Lai T., Steppi S. other authors ((2004; ). arb: a software environment for sequence data. Nucleic Acids Res 32:1363–1371 [CrossRef]
     [Google Scholar]
  24. Meier-Stauffer K., Busse H.-J., Rainey F. A., Burghardt J., Scheberl A., Hollaus F., Kuen B., Makristathis A., Sleytr U. B., Messner P. 1996; Description of Bacillus thermoaerophilus sp. nov., to include sugar beet isolates and Bacillus brevis ATCC 12990. Int J Syst Bacteriol 46:532–541 [CrossRef]
     [Google Scholar]
  25. Niederberger T. D., Steven B., Charvet S., Barbier B., White L. G. 2009; Virgibacillus arcticus sp. nov., a moderately halophilic, endospore-forming bacterium from permafrost in the Canadian high Arctic. Int J Syst Evol Microbiol 59:2219–2225 [CrossRef]
     [Google Scholar]
  26. Olsen G. J., Matsuda H., Hagstrom R., Overbeek R. 1994; fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10:41–48
     [Google Scholar]
  27. Pruesse E., Quast C., Knittel K., Fuchs B. M., Ludwig W., Peplies J., Glöckner F. O. 2007; SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188–7196 [CrossRef]
     [Google Scholar]
  28. Quesada T., Aguilera M., Morillo J. A., Ramos-Cormenzana A., Monteoliva-Sánchez M. 2007; Virgibacillus olivae sp. nov., isolated from waste wash-water from processing of Spanish-style green olives. Int J Syst Evol Microbiol 57:906–910 [CrossRef]
     [Google Scholar]
  29. Stolz A., Busse H.-J., Kämpfer P. 2007; Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57:572–576 [CrossRef]
     [Google Scholar]
  30. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: Molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
     [Google Scholar]
  31. Tindall B. J. 1990a; Lipid composition of Halobacterium lacusprofundi . FEMS Microbiol Lett 66:199–202 [CrossRef]
     [Google Scholar]
  32. Tindall B. J. 1990b; A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13:128–130 [CrossRef]
     [Google Scholar]
  33. Wainø M., Tindall B., Schumann P., Ingvorsen K. 1999; Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49:821–831 [CrossRef]
     [Google Scholar]
  34. Wang C. Y., Chang C. C., Ng C. C., Chen T. W., Shyu Y. T. 2008; Virgibacillus chiguensis sp. nov., a novel halophilic bacterium isolated from Chigu, a previously commercial saltern located in southern Taiwan. Int J Syst Evol Microbiol 58:341–345 [CrossRef]
     [Google Scholar]
  35. Yoon J. H., Oh T. K., Park Y. H. 2004; Transfer of Bacillus halodenitrificans Denariaz et al. 1989 to the genus Virgibacillus as Virgibacillus halodenitrificans comb. nov. Int J Syst Evol Microbiol 54:2163–2167 [CrossRef]
     [Google Scholar]
  36. Yoon J. H., Kang S. J., Lee S. Y., Lee M. H., Oh T. K. 2005; Virgibacillus dokdonensis sp. nov., isolated from a Korean island, Dokdo, located at the edge of the East Sea in Korea. Int J Syst Evol Microbiol 55:1833–1837 [CrossRef]
     [Google Scholar]
  37. Yoon J. H., Kang S. J., Jung Y. T., Lee K. C., Oh H. W., Oh T. K. 2010; Virgibacillus byunsanensis sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 60:291–295 [CrossRef]
     [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.020974-0
Loading
Virgibacillus soli sp. nov., isolated from mountain soil
Int J Syst Evol Microbiol 61, 275 (2011); https://doi.org/10.1099/ijs.0.020974-0
/content/journal/ijsem/10.1099/ijs.0.020974-0
/content/journal/ijsem/10.1099/ijs.0.020974-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF

Supplementary material 2

PDF

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error