Aeromonas rivuli sp. nov., isolated from the upstream region of a karst water rivulet

References

1. Abbott S. L., Cheung W. K., Janda J. M. 2003; The genus Aeromonas : biochemical characteristics, atypical reactions, and phenotypic identification schemes. J Clin Microbiol 41:2348–2357 [CrossRef]
   [Google Scholar]
2. Allen D. A., Austin B., Colwell R. R. 1983; Aeromonas media , a new species isolated from river water. Int J Syst Evol Microbiol 33:599–604
   [Google Scholar]
3. Alperi A., Figueras M. J., Inza I., Martínez-Murcia A. J. 2008; Analysis of 16S rRNA gene mutations in a subset of Aeromonas strains and their impact in species delineation. Int Microbiol 11:185–194
   [Google Scholar]
4. Alperi A., Martínez-Murcia A. J., Ko W.C., Monera A., Saavedra M. J., Figueras M. J. 2010a Aeromonas taiwanensis sp. nov. and Aeromonas sanarellii sp. nov., two new clinical species from Taiwan. Int J Syst Evol Microbiol 60, 2048-–2055. [CrossRef]
5. Alperi A., Martínez-Murcia A. J., Monera A., Saavedra M. J., Figueras M. J. 2010b; Aeromonas fluvialis sp. nov., isolated from Spanish river. Int J Syst Evol Microbiol 60:72–77 [CrossRef]
   [Google Scholar]
6. Beaz-Hidalgo R., Alperi A., Figueras M. J., Romalde J. L. 2009; Aeromonas piscicola sp. nov., isolated from diseased fish. Syst Appl Microbiol 32:471–479 [CrossRef]
   [Google Scholar]
7. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . Proc Natl Acad Sci U S A 75:4801–4805 [CrossRef]
   [Google Scholar]
8. Collado L., Cleenwerck I., Van Trappen S., De Vos P., Figueras M. J. 2009; Arcobacter mytili sp. nov., an indoxyl acetate-hydrolysis negative bacterium isolated from mussels. Int J Syst Evol Microbiol 59:1391–1396 [CrossRef]
   [Google Scholar]
9. Cousin S., Brambilla E., Yang J., Stackebrandt E. 2008; Culturable aerobic bacteria from the upstream region of a karst water rivulet. Int Microbiol 11:91–100
   [Google Scholar]
10. Demarta A., Küpfer M., Riegel P., Harf-Monteil C., Tonolla M., Peduzzi R., Monera A., Saavedra M. J., Martínez-Murcia A. J. 2008; Aeromonas tecta sp. nov., isolated from clinical and environmental sources. Syst Appl Microbiol 31:278–286 [CrossRef]
    [Google Scholar]
11. Esteve C., Gutiérrez M. C., Ventosa A. 1995; Aeromonas encheleia sp. nov., isolated from European eels. Int J Syst Bacteriol 45:462–466 [CrossRef]
    [Google Scholar]
12. Figueras M. J. 2005; Clinical relevance of Aeromonas . Rev Med Microbiol 16:145–153 [CrossRef]
    [Google Scholar]
13. Harf-Monteil C., Fleche A. L., Riegel P., Prevost G., Bermond D., Grimont P. A., Monteil H. 2004; Aeromonas simiae sp. nov., isolated from monkey faeces. Int J Syst Evol Microbiol 54:481–485 [CrossRef]
    [Google Scholar]
14. Huys G., Kämpfer P., Altwegg M., Kersters I., Lamb A., Coopman R., Lüthy-Hottenstein J., Vancanneyt M., Janssen P., Kersters K. 1997; Aeromonas popoffii sp. nov., a mesophilic bacterium isolated from drinking water production plants and reservoirs. Int J Syst Bacteriol 47:1165–1171 [CrossRef]
    [Google Scholar]
15. Janda J. M., Abbott S. L. 2010; The genus Aeromonas : taxonomy, pathogenicity, and infection. Clin Microbiol Rev 23:35–73 [CrossRef]
    [Google Scholar]
16. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
17. Küpfer M., Kuhnert P., Korczak B. M., Peduzzi R., Demarta A. 2006; Genetic relationships of Aeromonas strains inferred from 16S rRNA, gyrB and rpoB gene sequences. Int J Syst Evol Microbiol 56:2743–2751 [CrossRef]
    [Google Scholar]
18. Martin-Carnahan A., Joseph S. W. 2005; Order XII. Aeromonadales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn. vol 2Bp–556 Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. New York: Springer;
    [Google Scholar]
19. Martínez-Murcia A. J., Benlloch S., Collins M. D. 1992; Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations. Int J Syst Bacteriol 42:412–421 [CrossRef]
    [Google Scholar]
20. Martínez-Murcia A. J., Soler L., Saavedra M. J., Chacón M. R., Guarro J., Stackebrandt E., Figueras M. J. 2005; Phenotypic, genotypic, and phylogenetic discrepancies to differentiate Aeromonas salmonicida from Aeromonas bestiarum . Int Microbiol 8:259–269
    [Google Scholar]
21. Martínez-Murcia A. J., Saavedra M. J., Mota V. R., Maier T., Stackebrandt E., Cousin S. 2008; Aeromonas aquariorum sp. nov., isolated from aquaria of ornamental fish. Int J Syst Evol Microbiol 58:1169–1175 [CrossRef]
    [Google Scholar]
22. Martínez-Murcia A. J., Monera A., Alperi A., Figueras M. J., Saavedra M. J. 2009; Phylogenetic evidence suggests that strains of Aeromonas hydrophila subsp. dhakensis belong to the species Aeromonas aquariorum sp. nov. Curr Microbiol 58:76–80 [CrossRef]
    [Google Scholar]
23. Miñana-Galbis D., Farfán M., Lorén J. G., Fusté M. C. 2002; Biochemical identification and numerical taxonomy of Aeromonas spp. isolated from environmental and clinical samples in Spain. J Appl Microbiol 93:420–430 [CrossRef]
    [Google Scholar]
24. Miñana-Galbis D., Farfán M., Fusté M. C., Lorén J. G. 2004; Aeromonas molluscorum sp. nov., isolated from bivalve molluscs. Int J Syst Evol Microbiol 54:2073–2078 [CrossRef]
    [Google Scholar]
25. Miñana-Galbis D., Farfán M., Fusté M. C., Lorén J. G. 2007; Aeromonas bivalvium sp. nov., isolated from bivalve molluscs. Int J Syst Evol Microbiol 57:582–587 [CrossRef]
    [Google Scholar]
26. Miñana-Galbis D., Urbizu-Serrano A., Farfán M., Fusté M. C., Lorén G. 2009; Phylogenetic analysis and identification of Aeromonas species based on sequencing of the cpn60 universal target. Int J Syst Evol Microbiol 59:1976–1983 [CrossRef]
    [Google Scholar]
27. Miñana-Galbis D., Farfán M., Gaspar Lorén J., Fusté M. C. 2010; Proposal to assign Aeromonas diversa sp. nov. as a novel species designation for Aeromonas group 501. Syst Appl Microbiol 33:15–19 [CrossRef]
    [Google Scholar]
28. Nhung P. H., Hata H., Ohkusu K., Noda M., Shah M. M., Goto K., Ezaki T. 2007; Use of the novel phylogenetic marker dnaJ and DNA–DNA hybridization to clarify interrelationships within the genus Aeromonas . Int J Syst Evol Microbiol 57:1232–1237 [CrossRef]
    [Google Scholar]
29. Ørmen O., Granum P. E., Lassen J., Figueras M. J. 2005; Lack of agreement between biochemical and genetic identification of Aeromonas spp. APMIS 113:203–207 [CrossRef]
    [Google Scholar]
30. Saavedra M. J., Figueras M. J., Martínez-Murcia A. J. 2006; Updated phylogeny of the genus Aeromonas . Int J Syst Evol Microbiol 56:2481–2487 [CrossRef]
    [Google Scholar]
31. Saitou N., Nei M. 1987; The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
32. Sepe A., Barbieri P., Peduzzi R., Demarta A. 2008; Evaluation of recA sequencing for the classification of Aeromonas strains at the genotype level. Lett Appl Microbiol 46:439–444 [CrossRef]
    [Google Scholar]
33. Soler L., Yañez M. A., Chacón M. R., Aguilera-Arreola M. G., Catalán V., Figueras M. J., Martínez-Murcia A. J. 2004; Phylogenetic analysis of the genus Aeromonas based on two housekeeping genes. Int J Syst Evol Microbiol 54:1511–1519 [CrossRef]
    [Google Scholar]
34. Stackebrandt E., Ebers J. 2006; Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33:152–155
    [Google Scholar]
35. Stackebrandt E., Frederiksen W., Garrity G. M., Grimont A. D., Kämpfer P., Maiden M. C. J., Nesme X., Roselló-Mora R., Swings J. other authors 2002; Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043–1047 [CrossRef]
    [Google Scholar]
36. Swofford D. L. 2002 paup*: Phylogenetic analysis using parsimony (* and other methods), version 4.0b10 Sunderland, MA: Sinauer Associates;
    [Google Scholar]
37. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: Molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
38. Thompson J. D., Higgins D. G., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
39. Valera L., Esteve C. 2002; Phenotypic study by numerical taxonomy of strains belonging to the genus Aeromonas . J Appl Microbiol 93:77–95 [CrossRef]
    [Google Scholar]
40. Yáñez M. A., Catalán V., Apraiz D., Figueras M. J., Martínez-Murcia A. J. 2003; Phylogenetic analysis of members of the genus Aeromonas based on gyrB gene sequences. Int J Syst Evol Microbiol 53:875–883 [CrossRef]
    [Google Scholar]