1887

Abstract

A novel Gram-positive strain WQ 127069 that was isolated from the soil of Baima Snow Mountain, a habitat of highly endangered Yunnan snub-nosed monkeys (), was subjected to a polyphasic taxonomic study. Phylogenetic analysis based on the 16S rRNA gene sequences showed that the isolate belongs to the genus , showing 98.4 and 96.08 % sequence similarity to the type strains PM10 and LMG 31456, respectively. The G+C content of the genomic DNA of strain WQ127069 was 45.6 mol%. The predominant isoprenoid quinone was MK-7, and -diaminopimelic acid was present in peptidoglycan. The major cellular fatty acids were antiiso-C, iso-C and C. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol and phosphatidylmonomethylethanolamine. The whole genome average nucleotide identity and digital DNA–DNA hybridization values between strain WQ 127069 and strain PM10 were 93.2 and 52.5 %, respectively. Growth occurred at 5–40 °C (optimally at 20–35 °C), pH 6–8 (optimally at pH7.0) and with 0.5–2 % (w/v) NaCl (optimally at 0.5 %). On the basis of the taxonomic evidence, a novel species, sp. nov., is proposed. The type strain is WQ 127069 (=KCTC 43480=CCTCC AB 2022381).

Funding
This study was supported by the:
  • Yunnan Provincial Education Department Research Fund Project (Award 2023J0004)
    • Principle Award Recipient: Xiu-LinHan
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.006260
2024-02-09
2024-05-17
Loading full text...

Full text loading...

References

  1. Ash C, Priest FG, Collins MD. Paenibacillus gen. nov. and Paenibacillus polymyxa comb. nov. in validation of the publication of new names and new combinations previously efectively published outside the IJSB, list no. 51. Int J Syst Bacteriol 1994; 44:852 [View Article]
    [Google Scholar]
  2. Parte AC, Sardà Carbasse J, Meier-Kolthoff JP, Reimer LC, Göker M. List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. Int J Syst Evol Microbiol 2020; 70:5607–5612 [View Article] [PubMed]
    [Google Scholar]
  3. Ambrosini A, Sant’Anna FH, Heinzmann J, de Carvalho Fernandes G, Bach E et al. Paenibacillus helianthi sp. nov., a nitrogen fixing species isolated from the rhizosphere of Helianthus annuus L. Antonie van Leeuwenhoek 2018; 111:2463–2471 [View Article] [PubMed]
    [Google Scholar]
  4. Ripa FA, Tong S, Cao W-D, Wang ET, Wang T et al. Paenibacillus rhizophilus sp. nov., a nitrogen-fixing bacterium isolated from the rhizosphere of wheat (Triticum aestivum L.). Int J Syst Evol Microbiol 2019; 69:3689–3695 [View Article] [PubMed]
    [Google Scholar]
  5. Kiran S, Swarnkar MK, Mayilraj S, Tewari R, Gulati A. Paenibacillus ihbetae sp. nov., a cold-adapted antimicrobial producing bacterium isolated from high altitude Suraj Tal Lake in the Indian trans-Himalayas. Syst Appl Microbiol 2017; 40:430–439 [View Article] [PubMed]
    [Google Scholar]
  6. Kim C-G, Kang J-P, Huo Y, Chokkalingam M, Kim Y-J et al. Paenibacillus panacihumi sp. nov., a potential plant growth-promoting bacterium isolated from ginseng-cultivated soil. Arch Microbiol 2018; 200:1049–1055 [View Article] [PubMed]
    [Google Scholar]
  7. Li H-P, Gan Y-N, Yue L-J, Han Q-Q, Chen J et al. Newly isolated Paenibacillus monticola sp. nov., a novel plant growth-promoting rhizobacteria strain from high-altitude spruce forests in the Qilian Mountains, China. Front Microbiol 2022; 13:833313 [View Article] [PubMed]
    [Google Scholar]
  8. Ghio S, Sauka DH, Ferrari AE, Piccini FE, Ontañon OM et al. Paenibacillus xylanivorans sp. nov., a xylan-degrading bacterium isolated from decaying forest soil. Int J Syst Evol Microbiol 2019; 69:3818–3823 [View Article] [PubMed]
    [Google Scholar]
  9. Zhu J, Mo K, Zheng Z, Wang Z, Hu Y et al. Paenibacillus algicola sp. nov., a novel alginate lyase-producing marine bacterium. Int J Syst Evol Microbiol 2020; 70:5087–5092 [View Article] [PubMed]
    [Google Scholar]
  10. Ham YJ, Jeong JW, Lee DH, Kim SB. Paenibacillus artemisiicola sp. nov. and Paenibacillus lignilyticus sp. nov., two new endophytic bacterial species isolated from plant roots. Int J Syst Evol Microbiol 2022; 72: [View Article] [PubMed]
    [Google Scholar]
  11. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  12. Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol 2021; 38:3022–3027 [View Article] [PubMed]
    [Google Scholar]
  13. Lin SH, Liao YC. CISA: contig integrator for sequence assembly of bacterial genomes. PLoS One 2013; 8:e60843 [View Article] [PubMed]
    [Google Scholar]
  14. Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25:955–964 [View Article] [PubMed]
    [Google Scholar]
  15. Blin K, Shaw S, Kloosterman AM, Charlop-Powers Z, van Wezel GP et al. antiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Res 2021; 49:W29–W35 [View Article] [PubMed]
    [Google Scholar]
  16. Yoon SH, Ha SM, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017; 110:1281–1286 [View Article] [PubMed]
    [Google Scholar]
  17. Meier-Kolthoff JP, Carbasse JS, Peinado-Olarte RL, Göker M. TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes. Nucleic Acids Res 2022; 50:D801–D807 [View Article] [PubMed]
    [Google Scholar]
  18. Meier-Kolthoff JP, Göker M. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun 2019; 10:2182 [View Article] [PubMed]
    [Google Scholar]
  19. Lefort V, Desper R, Gascuel O. FastME 2.0: a comprehensive, accurate, and fast distance-based phylogeny inference program. Mol Biol Evol 2015; 32:2798–2800 [View Article] [PubMed]
    [Google Scholar]
  20. Chun J, Rainey FA. Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea. Int J Syst Evol Microbiol 2014; 64:316–324 [View Article] [PubMed]
    [Google Scholar]
  21. Moyes RB, Reynolds J, Breakwell DP. Differential staining of bacteria: Gram stain. Curr Protoc Microbiol 2009; 15:Appendix 3C [View Article] [PubMed]
    [Google Scholar]
  22. Bernardet J-F, Nakagawa Y, Holmes B, Flavobacteri ST. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049–1070 [View Article] [PubMed]
    [Google Scholar]
  23. Lányi B. Classical and rapid identification method for medically important bacteria. In Cowell R. eds Methods in Microbiology vol 19 Academic Press; 1987 pp 1–65
    [Google Scholar]
  24. Han X-L, Wang Q, Zhang C-L, Fang Z-Q, Shen J-Q et al. Sphingobacterium rhinopitheci sp. nov., isolated from the faeces of Rhinopithecus bieti in China. Arch Microbiol 2021; 203:4629–4634 [View Article] [PubMed]
    [Google Scholar]
  25. Tindall BJ, Sikorski J, Smibert RA, Krieg NR. Methods for General and Molecular Microbiology, 3rd edn ASM Press; 2007 pp 330–393
    [Google Scholar]
  26. Komagata K, Susuki K. 4Lipid and cell-wall systematics in bacterial systematics. Methods Microbiol 1988; 19:161–207 [View Article]
    [Google Scholar]
  27. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. In Technical Note 101 vol 101 Newark, Del: Microbial ID, Inc; 2001
    [Google Scholar]
  28. Wang Q, Han X-L, Huang Z-P, Huang S, An D-F et al. Faecalibacter rhinopitheci sp. nov., a bacterium isolated from the faeces of Rhinopithecus bieti. Int J Syst Evol Microbiol 2021; 71: [View Article] [PubMed]
    [Google Scholar]
  29. Tamaoka J. Analysis of bacterial menaquinone mixtures by reverse-phase high-performance liquid chromatography. Methods Enzymol 1986; 123:251–256 [View Article] [PubMed]
    [Google Scholar]
  30. Logan NA, Berge O, Bishop AH, Busse H-J, De Vos P et al. Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 2009; 59:2114–2121 [View Article] [PubMed]
    [Google Scholar]
  31. Menéndez E, Ramírez-Bahena M-H, Carro L, Fernández-Pascual M, Peter Klenk H et al. Paenibacillus periandrae sp. nov., isolated from nodules of Periandra mediterranea. Int J Syst Evol Microbiol 2016; 66:1838–1843 [View Article] [PubMed]
    [Google Scholar]
  32. Qi SS, Cnockaert M, Carlier A, Vandamme PA. Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere. Int J Syst Evol Microbiol 2021; 71: [View Article]
    [Google Scholar]
  33. Lee H, Chaudhary DK, Lim OB, Kim DU. Paenibacillus agricola sp. nov., isolated from agricultural soil. Arch Microbiol 2023; 205:248 [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.006260
Loading
/content/journal/ijsem/10.1099/ijsem.0.006260
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error