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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 73, Issue 12

sp. nov. and sp. nov., isolated from the rhizosphere of a plant growing in the Salar de Tara region of the Central Andes in Chile Open Access

Abstract

Two novel strains, STR1-7 and STR1S-6, were isolated from the rhizosphere of a plant growing in the Salar de Tara region of the Atacama Desert, Chile. Chemotaxonomic, cultural and phenotypic features confirmed that the isolates belonged to the genus . They grew from 20 to 37 °C, from pH7 to 8 and in the presence of up to 3 %, w/v NaCl. The isolates formed distinct branches in gene trees based on 16S rRNA gene sequences and on a multi-locus sequence analysis of conserved house-keeping genes. A phylogenomic tree generated from the draft genomes of the isolates and their closest phylogenetic neighbours showed that isolate STR1-7 is most closely related to S2509, and isolate STR1S-6 forms a distinct branch that is most closely related to 12 validly named species, including the earliest proposed member of the group. The isolates were separated from one another and from their closest phylogenomic neighbours using a combination of chemotaxonomic, genomic and phenotypic features, and by low average nucleotide index and digital DNA–DNA hybridization values. Consequently, it is proposed that isolates STR1-7 and STR1S-6 be recognized as representing new species in the genus , namely as sp. nov. and sp. nov.; the type strains are STR1-7 (=CECT 9665=LMG 30768) and STR1S-6 (=CECT 9666=LMG 30770), respectively. Genome mining showed that the isolates have the capacity to produce novel specialized metabolites, notably antibiotics and compounds that promote plant growth, as well as a broad-range of stress-related genes that provide an insight into how they cope with harsh abiotic conditions that prevail in high-altitude Atacama Desert soils.

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): Atacama Desert , Micromonospora , rhizosphere , specialized metabolites and taxonomic description
Funding
This study was supported by the:
  • Newton Fund (Award Grant JIC CA586)
    • Principle Award Recipient: JuanA. Asenjo
© 2023 The Authors
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
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Micromonospora parastrephiae sp. nov. and Micromonospora tarensis sp. nov., isolated from the rhizosphere of a Parastrephia quadrangularis plant growing in the Salar de Tara region of the Central Andes in Chile
Int J Syst Evol Microbiol 73, 006189 (2023); https://doi.org/10.1099/ijsem.0.006189
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