Empedobacter sedimenti sp. nov., isolated from sediment of East Taihu Lake

References

1. Vandamme P, Bernardet JF, Segers P. New perspectives in the classification of the Flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 1994; 44:827–831
   [Google Scholar]
2. Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA et al. Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol 2008; 74:2461–2470 [View Article] [PubMed]
   [Google Scholar]
3. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 24:189–204 [View Article] [PubMed]
   [Google Scholar]
4. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article] [PubMed]
   [Google Scholar]
5. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20:406–416 [View Article]
   [Google Scholar]
6. Kimura M. Evolutionary rates models. J Mol Evol 1980; 16:111–120 [View Article]
   [Google Scholar]
7. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article] [PubMed]
   [Google Scholar]
8. Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 2015; 32:268–274 [View Article] [PubMed]
   [Google Scholar]
9. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T et al. The RAST server: rapid annotations using subsystems technology. BMC Genomics 2008; 9:75 [View Article] [PubMed]
   [Google Scholar]
10. Yoon S-H, Ha S-M, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017; 110:1–6 [View Article] [PubMed]
    [Google Scholar]
11. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018; 68:461–466 [View Article] [PubMed]
    [Google Scholar]
12. Collins MD, Pirouz T, Goodfellow M, Minnikin DE. Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 1977; 100:221–230 [View Article] [PubMed]
    [Google Scholar]
13. Hawthorne JN. Techniques of lipidology: isolation, analysis and identification of lipids (2nd revised edition). Biochem Soc Trans 1988; 16:906 [View Article]
    [Google Scholar]
14. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
15. Zhang R-G, Tan X, Liang Y, Meng T-Y, Liang H-Z et al. Description of Chishuiella changwenlii gen. nov., sp. nov., isolated from freshwater, and transfer of Wautersiella falsenii to the genus Empedobacter as Empedobacter falsenii comb. nov. Int J Syst Evol Microbiol 2014; 64:2723–2728 [View Article] [PubMed]
    [Google Scholar]
16. Schauss T, Busse H-J, Golke J, Kämpfer P, Glaeser SP. Empedobacter stercoris sp. nov., isolated from an input sample of a biogas plant. Int J Syst Evol Microbiol 2015; 65:3746–3753 [View Article] [PubMed]
    [Google Scholar]
17. Kim Y-O, Park S, Park I-S, Nam B-H, Kim D-G et al. Empedobacter tilapiae sp. nov., isolated from an intestine of Nile tilapia (Oreochromis niloticus). Int J Syst Evol Microbiol 2019; 69:2781–2786 [View Article]
    [Google Scholar]