Mycobacterium kiyosense sp. nov., a scotochromogenic slow-glowing species isolated from respiratory specimens

References

1. Falkinham JO. Ecology of nontuberculous mycobacteria. Microorg 2021; 9:2262 [View Article] [PubMed]
   [Google Scholar]
2. Arikawa K, Ichijo T, Nakajima S, Nishiuchi Y, Yano H et al. Genetic relatedness of Mycobacterium avium subsp. hominissuis isolates from bathrooms of healthy volunteers, rivers, and soils in Japan with human clinical isolates from different geographical areas. Infect Genet Evol 2019; 74:103923 [View Article] [PubMed]
   [Google Scholar]
3. Uwamino Y, Nishimura T, Sato Y, Tamizu E, Uno S et al. Showering is associated with Mycobacterium avium complex lung disease: an observational study in Japanese women. J Infect Chemother 2020; 26:211–214 [View Article] [PubMed]
   [Google Scholar]
4. Gebert MJ, Delgado-Baquerizo M, Oliverio AM, Webster TM, Nichols LM et al. Ecological analyses of mycobacteria in showerhead Biofilms and their relevance to human health. MBio 2018; 9:1–15 [View Article] [PubMed]
   [Google Scholar]
5. Soto-Giron MJ, Rodriguez-R LM, Luo C, Elk M, Ryu H et al. Biofilms on hospital shower hoses: characterization and implications for nosocomial infections. Appl Environ Microbiol 2016; 82:2872–2883 [View Article] [PubMed]
   [Google Scholar]
6. Zlojtro M, Jankovic M, Samarzija M, Zmak L, Jankovic VK et al. Nosocomial pseudo-outbreak of Mycobacterium gordonae associated with a hospital’s water supply contamination: a case series of 135 patients. J Water Health 2015; 13:125–130 [View Article] [PubMed]
   [Google Scholar]
7. Takajo I, Iwao C, Aratake M, Nakayama Y, Yamada A et al. Pseudo-outbreak of Mycobacterium paragordonae in a hospital: possible role of the aerator/rectifier connected to the faucet of the water supply system. J Hosp Infect 2020; 104:545–551 [View Article] [PubMed]
   [Google Scholar]
8. Daley CL, Iaccarino JM, Lange C, Cambau E, Wallace RJ et al. Treatment of nontuberculous mycobacterial pulmonary disease: an official ATS/ERS/ESCMID/IDSA clinical practice guideline. J Hosp Infect 2020; 56:2000535 [View Article] [PubMed]
   [Google Scholar]
9. Kim B-J, Hong S-H, Kook Y-H, Kim B-J. Mycobacterium paragordonae sp. nov., a slowly growing, scotochromogenic species closely related to Mycobacterium gordonae. Int J Syst Evol Microbiol 2014; 64:39–45 [View Article] [PubMed]
   [Google Scholar]
10. Liu G, Yu X, Luo J, Hu Y, Dong L et al. Mycobacterium vicinigordonae sp. nov., a slow-growing scotochromogenic species isolated from sputum. Int J Syst Evol Microbiol 2021; 71:004796 [View Article] [PubMed]
    [Google Scholar]
11. Morimoto K, Kazumi Y, Shiraishi Y, Yoshiyama T, Murase Y et al. Clinical and microbiological features of definite Mycobacterium gordonae pulmonary disease: the establishment of diagnostic criteria for low-virulence mycobacteria. Trans R Soc Trop Med Hyg 2015; 109:589–593 [View Article] [PubMed]
    [Google Scholar]
12. Itoh S, Kazumi Y, Abe C, Takahashi M. Heterogeneity of RNA polymerase gene (rpoB) sequences of Mycobacterium gordonae clinical isolates identified with a DNA probe kit and by conventional methods. J Clin Microbiol 2003; 41:1656–1663 [View Article] [PubMed]
    [Google Scholar]
13. Wayne LG, Good RC, Krichevsky MI, Beam RE, Blacklock Z et al. First report of the cooperative, open-ended study of slowly growing mycobacteria by the International working group on mycobacterial taxonomy. Int J Syst Bacteriol 1981; 31:1–20 [View Article]
    [Google Scholar]
14. Wayne LG, Good RC, Böttger EC, Butler R, Dorsch M et al. Semantide- and chemotaxonomy-based analyses of some problematic phenotypic clusters of slowly growing mycobacteria, a cooperative study of the international working group on mycobacterial taxonomy. Int J Syst Bacteriol 1996; 46:280–297 [View Article] [PubMed]
    [Google Scholar]
15. Tsukamura M, Shimoide H. Unusual strains of group III mycobacteria associated with pulmonary disease in a patient. Microbiol Immunol 1977; 21:473–474 [View Article] [PubMed]
    [Google Scholar]
16. Fukano H, Yoshida M, Kazumi Y, Sakagami N, Ato M et al. Complete chromosomal genome sequence of Mycobacterium sp. strain Iwgmt90018-18076. Microbiol Resour Announc 2022; 11:e0007822 [View Article] [PubMed]
    [Google Scholar]
17. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article] [PubMed]
    [Google Scholar]
18. Meier-Kolthoff JP, Göker M. TYGS is an automated high-throughput platform for state-of-the-art genome-based Taxonomy. Nat Commun 2019; 10:2182 [View Article] [PubMed]
    [Google Scholar]
19. Jain C, Rodriguez-R LM, Phillippy AM, Konstantinidis KT, Aluru S. High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries. Nat Commun 2018; 9:5114 [View Article] [PubMed]
    [Google Scholar]
20. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 2009; 106:19126–19131 [View Article] [PubMed]
    [Google Scholar]
21. Fukano H, Wada S, Kurata O, Katayama K, Fujiwara N et al. Mycobacterium stephanolepidis sp. nov., a rapidly growing species related to Mycobacterium chelonae, isolated from marine teleost fish, Stephanolepis cirrhifer. Int J Syst Evol Microbiol 2017; 67:2811–2817 [View Article] [PubMed]
    [Google Scholar]
22. Blanc-Potard AB, Groisman EA. The Salmonella selC locus contains a pathogenicity Island mediating Intramacrophage survival. EMBO J 1997; 16:5376–5385 [View Article] [PubMed]
    [Google Scholar]
23. Buchmeier N, Blanc-Potard A, Ehrt S, Piddington D, Riley L et al. A parallel Intraphagosomal survival strategy shared by Mycobacterium tuberculosis and Salmonella enterica. Mol Microbiol 2000; 35:1375–1382 [View Article] [PubMed]
    [Google Scholar]