1887

Abstract

Two Gram-stain-negative, rod-shaped, non-spore-forming, strictly aerobic, motile bacteria with a single polar flagellum, designated strains C1424 and C2222, were isolated from marine alga collected from the sea shore at Yantai, PR China. Strain C1424 grew at 4–37 °C and in the presence of 1–9 % (w/v) NaCl, while strain C2222 grew at 4–32 °C with 1–6 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences and concatenated amino acid sequences of 120 ubiquitous single-copy proteins showed that both strains C1424 and C2222 belonged to the genus , showing highest 16S rRNA gene sequence similarities to the type strains of (98.1 %) and (98.1 %), respectively. The major fatty acids of the two strains were C 6 and/or C 7, C 6 and/or C 7 and C, their predominant polar lipids were phosphatidylethanolamine and phosphatidylglycerol, and their sole respiratory quinone was Q8. On the basis of polyphasic analyses, strains C1424 and C2222 are considered to represent two novel species within the genus , for which the names sp. nov. and sp. nov. are proposed. The type strains are C1424 (=KCTC 72119=MCCC 1K03601) and C2222 (=KCTC 72120=MCCC 1K03602), respectively.

Funding
This study was supported by the:
  • the He'nan Province University Youth Researcher Support Project (Award 2016GGJS-102)
    • Principle Award Recipient: YanWang
  • the Foundation of Henan Science and Technology Agency of China (Award 212102110383 and 202102110261)
    • Principle Award Recipient: JianyiGuan
  • he Key Scientific Research Project of Colleges and Universities in Henan Province (Award 22A180028)
    • Principle Award Recipient: YangLi
  • the Key Scientific Research Project of Colleges and Universities in Henan Province (Award 22A350008)
    • Principle Award Recipient: TaoLi
  • the Key Scientific Research Project of Colleges and Universities in Henan Province (Award 23A180016)
    • Principle Award Recipient: YanWang
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2023-12-19
2024-05-09
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References

  1. Van Landschoot A, De Ley J. Intra- and intergeneric similarities of the rRNA cistrons of Alteromonas, Marinomonas (gen. nov.) and some other Gram-negative bacteria. J Gen Microbiol 1983; 129:3057–3074 [View Article]
    [Google Scholar]
  2. IJSEM list editors Validation list no. 13. Validation of the publication of new names and new combinations previously effectively published outside the IJSB. Int J Syst Bacteriol 1984; 34:91–92 [View Article]
    [Google Scholar]
  3. Espinosa E, Marco-Noales E, Gómez D, Lucas-Elío P, Ordax M et al. Taxonomic study of Marinomonas strains isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp. nov. and Marinomonas pollencensis sp. nov. Int J Syst Evol Microbiol 2010; 60:93–98 [View Article] [PubMed]
    [Google Scholar]
  4. Ojha AK, Verma A, Pal Y, Bhatt D, Mayilraj S et al. Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga. Int J Syst Evol Microbiol 2017; 67:2746–2751 [View Article] [PubMed]
    [Google Scholar]
  5. Romanenko LA, Tanaka N, Frolova GM. Marinomonas arenicola sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2009; 59:2834–2838 [View Article] [PubMed]
    [Google Scholar]
  6. Kristyanto S, Chaudhary DK, Lee SS, Kim J. Characterization of Marinomonas algicida sp. nov., a novel algicidal marine bacterium isolated from seawater. Int J Syst Evol Microbiol 2017; 67:4777–4784 [View Article] [PubMed]
    [Google Scholar]
  7. Arahal DR, Lucena T, Macián MC, Ruvira MA, González JM et al. Marinomonas blandensis sp. nov., a novel marine gammaproteobacterium. Int J Syst Evol Microbiol 2016; 66:5544–5549 [View Article] [PubMed]
    [Google Scholar]
  8. Chang H-W, Roh SW, Kim K-H, Nam Y-D, Yoon J-H et al. Marinomonas basaltis sp. nov., a marine bacterium isolated from black sand. Int J Syst Evol Microbiol 2008; 58:2743–2747 [View Article] [PubMed]
    [Google Scholar]
  9. Lucena T, Mesa J, Rodriguez-Llorente ID, Pajuelo E, Caviedes et al. Marinomonas spartinae sp. nov., a novel species with plant-beneficial properties. Int J Syst Evol Microbiol 2016; 66:1686–1691 [View Article] [PubMed]
    [Google Scholar]
  10. Yu WN, Du ZZ, Chang YQ, Mu DS, Du ZJ. Marinomonas agarivorans sp. nov., an agar-degrading marine bacterium isolated from red algae. Int J Syst Evol Microbiol 2020; 70:100–104 [View Article] [PubMed]
    [Google Scholar]
  11. Lasa A, Pichon P, Diéguez AL, Romalde JL. Marinomonas gallaica sp. nov. and Marinomonas atlantica sp. nov., isolated from reared clams (Ruditapes decussatus). Int J Syst Evol Microbiol 2016; 66:3183–3188 [View Article] [PubMed]
    [Google Scholar]
  12. Sun X-M, Chen C, Xue Z, He X-Y, Liu N-H et al. Marinomonas algicola sp. nov. and Marinomonas colpomeniae sp. nov., isolated from marine macroalgae. Int J Syst Evol Microbiol 2019; 71: [View Article] [PubMed]
    [Google Scholar]
  13. Wang Y, Zhou C, Ming H, Kang J, Chen H et al. Pseudofulvibacter marinus sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2016; 66:1301–1305 [View Article] [PubMed]
    [Google Scholar]
  14. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  15. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792–1797 [View Article] [PubMed]
    [Google Scholar]
  16. Tamura K, Stecher G, Kumar S. MEGA11: Molecular Evolutionary Genetics Analysis version 11. Mol Biol Evol 2021; 38:3022–3027 [View Article] [PubMed]
    [Google Scholar]
  17. Rosselló-Móra R, Amann R. Past and future species definitions for Bacteria and Archaea. Syst Appl Microbiol 2015; 38:209–216 [View Article] [PubMed]
    [Google Scholar]
  18. Kim M, Oh H-S, Park S-C, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014; 64:346–351 [View Article] [PubMed]
    [Google Scholar]
  19. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006; 33:152–155
    [Google Scholar]
  20. Luo R, Liu B, Xie Y, Li Z, Huang W et al. SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 2012; 1:18 [View Article] [PubMed]
    [Google Scholar]
  21. Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 2007; 23:673–679 [View Article] [PubMed]
    [Google Scholar]
  22. Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A et al. A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Nat Biotechnol 2018; 36:996–1004 [View Article] [PubMed]
    [Google Scholar]
  23. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göeker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  24. Zhang H, Yohe T, Huang L, Entwistle S, Wu P et al. dbCAN2: a meta server for automated carbohydrate-active enzyme annotation. Nucleic Acids Res 2018; 46:W95–W101 [View Article] [PubMed]
    [Google Scholar]
  25. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article] [PubMed]
    [Google Scholar]
  26. Auch AF, von Jan M, Klenk H-P, Göker M. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Stand Genomic Sci 2010; 2:117–134 [View Article] [PubMed]
    [Google Scholar]
  27. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article] [PubMed]
    [Google Scholar]
  28. Rosselló-Mora R, Amann R. The species concept for prokaryotes. FEMS Microbiol Rev 2001; 25:39–67 [View Article] [PubMed]
    [Google Scholar]
  29. Beveridge TJ, Lawrence JR, Murray RGE. Sampling and staining for light microscopy. In Reddy CA, Beveridge TJ, Breznak JA, Marzluf GA, Schmidt TM et al. eds Methods for General and Molecular Microbiology Washington, DC: ASM Press; 2007 pp 19–33
    [Google Scholar]
  30. Lyman J, Fleming RH. Composition of seawater. J Mar Res 1940; 3:134–146 [View Article]
    [Google Scholar]
  31. Wang Y, Liu T, Ming H, Sun P, Cao C et al. Thalassotalea atypica sp. nov., isolated from seawater, and emended description of Thalassotalea eurytherma. Int J Syst Evol Microbiol 2018; 68:271–276 [View Article] [PubMed]
    [Google Scholar]
  32. Breznak JA, Costilow RN. Physicochemical factors in growth. In Gerhardt P, Murray RGE, WA W, Krieg NR. eds Methods for General and Molecular Bacteriology Washington, DC: ASM Press; 1994 pp 137–154
    [Google Scholar]
  33. Tindall BJ, Sikorski J, Smibert RM, Krieg NR. Phenotypic characterization and the principles of comparative systematics. In Reddy CA, Beveridge TJ, Breznak JA, Marzluf GA, Schmidt TM. eds Methods for General and Molecular Microbiology Washington, DC: 2007 [View Article]
    [Google Scholar]
  34. Sasser M. Technical Note 101: Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids Newark, DE: MIDI Inc; 1990
    [Google Scholar]
  35. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  36. Komagata K, Suzui K. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–207
    [Google Scholar]
  37. Collins MD. Isoprenoid quinones. In M G, AG O. eds Chemical Methods in Prokaryotic Systematics Chichester: Wiley Press; 1994 pp 265–309
    [Google Scholar]
  38. Yoon JH, Kang SJ, Oh TK. Marinomonas dokdonensis sp. nov., isolated from sea water. Int J Syst Evol Microbiol 2005; 55:2303–2307
    [Google Scholar]
  39. Gupta P, Chaturvedi P, Pradhan S, Delille D, Shivaji S. Marinomonas polaris sp. nov., a psychrohalotolerant strain isolated from coastal sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 2006; 56:361–364 [View Article]
    [Google Scholar]
  40. Jung YT, Oh TK, Yoon JH. Marinomonas hwangdonensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2012; 62:2062–2067
    [Google Scholar]
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