1887

Abstract

Judicial Opinion 128 addresses nomenclatural issues related to the names of classes validly published under the International Code of Nomenclature of Prokaryotes. It is confirmed that the common ending of some class names is not indicative of a joint taxonomic or phylogenetic placement; that the nomenclatural type of Edward and Freundt 1967 (Approved Lists 1980) is Freundt 1955 (Approved Lists 1980); and that the placement of a name on the list of rejected names does not imply that another name with the same spelling but a distinct rank is also placed on that list. The names at the rank of class (Gibbons and Murray 1978) Murray 1988, Murray 1988, Haeckel 1894 (Approved Lists 1980), Murray 1988, Philip 1956 (Approved Lists 1980), (ex Gibbons and Murray 1978) Murray 1988, Gibbons and Murray 1978 (Approved Lists 1980), Stackebrandt . 1988, Nägeli 1857 (Approved Lists 1980), Gibbons and Murray 1978 (Approved Lists 1980) are placed on the list of rejected names. For three common nominative singular suffixes of genus names their genitive singular and nominative plural forms are confirmed: (, ); (, ); and (, ). The class names Reysenbach 2002, Garrity and Holt 2002, Lee . 2011, Zhang . 2003, Choo . 2007 and Hedlund . 1998 are orthographically corrected to , , , , and , respectively.

  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.005797
2023-03-31
2024-05-10
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/73/3/ijsem005797.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.005797&mimeType=html&fmt=ahah

References

  1. Göker M. Solving the remaining problems with names of classes. Request for an Opinion. Int J Syst Evol Microbiol 2022; 72:5605 [View Article]
    [Google Scholar]
  2. Parker CT, Tindall BJ, Garrity GM. International Code of Nomenclature of Prokaryotes – Prokaryotic Code (2008 Revision). Int J Syst Evol Microbiol 2019; 69:S1–S111 [View Article]
    [Google Scholar]
  3. Oren A, Arahal DR, Göker M, Moore ERB, Rossello-Mora R et al. n.d. International Code of Nomenclature of Prokaryotes – Prokaryotic Code (2022 Revision). Int J Syst Evol Microbiol in press:
    [Google Scholar]
  4. Arahal DR, Busse H-J, Bull CT, Christensen H, Chuvochina M et al. Judicial Opinions 112-122. Int J Syst Evol Microbiol 2022; 72:5481 [View Article]
    [Google Scholar]
  5. Whitman WB, Bull CT, Busse HJ, Fournier P-E, Oren A et al. Request for revision of the Statutes of the International Committee on Systematics of Prokaryotes. Int J Syst Evol Microbiol 2019; 69:584–593 [View Article]
    [Google Scholar]
  6. Tindall BJ. The undesirable retroactive changes to Rule 8 of the International Code of Nomenclature of Prokaryotes. Int J Syst Evol Microbiol 2016; 66:4895–4896 [View Article] [PubMed]
    [Google Scholar]
  7. Oren A, Garrity GM. Proposal to modify the Note to Rule 61 of the International Code of Nomenclature of Prokaryotes. Int J Syst Evol Microbiol 2016; 66:3307–3309 [View Article] [PubMed]
    [Google Scholar]
  8. De Vos P, Trüper HG. Judicial Commission of the International Committee on Systematic Bacteriology IXth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 14, 15 and 18 August 1999, Sydney, Australia. Int J Syst Evol Microbiol 2000; 50:2239–2244 [View Article]
    [Google Scholar]
  9. Salam N, Jiao JY, Zhang XT, Li WJ. Update on the classification of higher ranks in the phylum Actinobacteria. Int J Syst Evol Microbiol 2020; 70:1331–1355 [View Article] [PubMed]
    [Google Scholar]
  10. Waite DW, Chuvochina M, Pelikan C, Parks DH, Yilmaz P et al. Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities. Int J Syst Evol Microbiol 2020; 70:5972–6016 [View Article] [PubMed]
    [Google Scholar]
  11. Stackebrandt E, Rainey FA, Ward-Rainey NL. Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 1997; 47:479–491 [View Article]
    [Google Scholar]
  12. Oren A, Garrity GM. Valid publication of the names of forty-two phyla of prokaryotes. Int J Syst Evol Microbiol 2021; 71:005056 [View Article] [PubMed]
    [Google Scholar]
  13. Garrity GM, Bell JA, Lilburn T. Class I. Alphaproteobacteria class. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, 2nd. edn vol 2 New York: Springer; 2005 p 1
    [Google Scholar]
  14. Garrity GM, Bell JA, Lilburn T. Class II. Betaproteobacteria class. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, 2nd. edn vol 2 New York: Springer; 2005 p 575
    [Google Scholar]
  15. Kuever J, Rainey FA, Widdel F. Class IV. Deltaproteobacteria class. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, 2nd edn. vol 2 New York: Springer; 2005 p 922
    [Google Scholar]
  16. Garrity GM, Bell JA, Lilburn T. Class V. Epsilonproteobacteria class. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria, 2nd. edn vol 2 New York: Springer; 2005 p 1145
    [Google Scholar]
  17. Garrity GM, Bell JA, Lilburn T. Class III. Gammaproteobacteria class. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Proteobacteria), part B (The Gammaproteobacteria, 2nd. edn vol 2 New York: Springer; 2005 p 1 [View Article]
    [Google Scholar]
  18. Edward DGff, Freundt EA. Proposal for Mollicutes as name of the class established for the order Mycoplasmatales. Int J Syst Bacteriol 1967; 17:267–268 [View Article]
    [Google Scholar]
  19. Skerman VBD, McGowan V, Sneath PHA. Approved Lists of Bacterial Names. Int J Syst Evol Microbiol 1980; 30:225–420 [View Article]
    [Google Scholar]
  20. Freundt EA. The classification of the Pleuropneumonia group of organisms (Borrelomycetales). Int Bull Bacteriol Nomen Taxon 1955; 5:67–78
    [Google Scholar]
  21. Haeckel EH. Systematische Phylogenie der Protisten und Pflanzen Berlin: I.G. Reimer; 1894 [View Article]
    [Google Scholar]
  22. Stackebrandt E, Murray RGE, Trüper HG. Proteobacteria classis nov., a name for the phylogenetic taxon that includes the “purple bacteria and their relatives.”. Int J Syst Bacteriol 1988; 38:321–325 [View Article]
    [Google Scholar]
  23. Garrity GM, Bell JA, Lilburn T. Phylum XIV. Proteobacteria phyl. nov. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. eds Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 2 - (The Proteobacteria), part B (The Gammaproteobacteria) New York: Springer; 2005 p 1 [View Article]
    [Google Scholar]
  24. Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A 1990; 87:4576–4579 [View Article]
    [Google Scholar]
  25. Tindall BJ. Names at the rank of class, subclass and order, their typification and current status: Supplementary information to Opinion 79. Judicial Commission of the International Committee on Systematics of Prokaryotes. Int J Syst Evol Microbiol 2014; 64:3599–3602 [View Article]
    [Google Scholar]
  26. Murray RGE. The higher taxa, or, a place for everything…?. In Krieg NR, Holt JG. eds Bergey’s Manual of Systematic Bacteriology, 1st. edn vol 1 Baltimore: The Williams & Wilkins Co; 1984 pp 31–34
    [Google Scholar]
  27. Göker M. Judicial Commission of the International Committee on Systematics of Prokaryotes: Minutes of the Meeting on 3 March 2022. Int J Syst Evol Microbiol 2022; 72:5395
    [Google Scholar]
  28. Göker M. Judicial Commission of the International Committee on Systematics of Prokaryotes: Minutes of the Meeting on 27 July 2022. Int J Syst Evol Microbiol 2022; 72:5583 [View Article]
    [Google Scholar]
  29. Gibbons NE, Murray RGE. Proposals concerning the higher taxa of bacteria. Int J Syst Bacteriol 1978; 28:1–6 [View Article]
    [Google Scholar]
  30. List Editor Validation List no. 25. Int J Syst Bacteriol 1988; 38:220–222 [View Article]
    [Google Scholar]
  31. Ludwig W, Schleifer K-H, Whitman WB. Class I. Bacilli class nov. In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W et al. eds Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 3 (The Firmicutes) New York: Springer; 2009 pp 19–20
    [Google Scholar]
  32. Boone DR. Class I. Methanobacteria class. nov. In Boone DR, Castenholz RW, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Archaea and the Deeply Branching and Phototrophic Bacteria, 2nd. edn vol 1 New York: Springer; 2001 pp 213–235
    [Google Scholar]
  33. Garrity GM, Holt JG. Class VI. Archaeoglobi class. nov. In Boone DR, Castenholz RW, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Archaea and the Deeply Branching and Phototrophic Bacteria, 2nd. edn vol 1 New York: Springer; 2001 pp 349–353
    [Google Scholar]
  34. Ludwig W, Schleifer K-H, Whitman WB. Class III. Erysipelotrichia class nov. In De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W et al. eds Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 3 (The Firmicutes) New York: Springer; 2009 p 1298
    [Google Scholar]
  35. Lee KC-Y, Dunfield PF, Morgan XC, Crowe MA, Houghton KM et al. Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10. Int J Syst Evol Microbiol 2011; 61:2482–2490 [View Article] [PubMed]
    [Google Scholar]
  36. Stearn WT. Botanical Latin Newton Abbot: David & Charles; 1973
    [Google Scholar]
  37. Huber H, Stetter KO. Class I. Deferribacteres class. nov. In Boone DR, Castenholz RW, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Archaea and the Deeply Branching and Phototrophic Bacteria, 2nd. edn vol 1 New York: Springer; 2001 pp 465–471
    [Google Scholar]
  38. Buchanan RE, Breed RS, St. John-Brooks R. Opinion 2. The combining forms (stems) of compound bacterial generic names ending in bacterium, -bacter, or -bactrum (bactro). Int Bull Bacteriol Nomen Taxon 1951; 1:37–38
    [Google Scholar]
  39. Judicial Commission Opinion No. 3. The gender of generic names ending in -bacter. Int Bull Bacteriol Nomen Taxon 1951; 1:36–37 [View Article]
    [Google Scholar]
  40. Tamaki H, Tanaka Y, Matsuzawa H, Muramatsu M, Meng X-Y et al. Armatimonas rosea gen. nov., sp. nov., of a novel bacterial phylum, Armatimonadetes phyl. nov., formally called the candidate phylum OP10. Int J Syst Evol Microbiol 2011; 61:1442–1447 [View Article]
    [Google Scholar]
  41. Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H et al. Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int J Syst Evol Microbiol 2003; 53:1155–1163 [View Article] [PubMed]
    [Google Scholar]
  42. Garrity GM, Holt JG. Class I. Chrysiogenetes class. nov. In Boone DR, Castenholz RW, Garrity GM. eds Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 1 - (The Archaea Andthe Deeply Branching and Phototrophic Bacteria) New York: Springer; 2001 pp 421–425
    [Google Scholar]
  43. List Editor Validation List no. 85. Validation of publication of new names and new combinations previously effectively published outside the IJSEM. Int J Syst Evol Microbiol 2002; 52:685–690 [View Article]
    [Google Scholar]
  44. Reysenbach A-L. Class I. Aquificae class. nov. In Boone DR, Castenholz RW, Garrity GM. eds Bergey’s Manual of Systematic BacteriologyThe Archaea and the Deeply Branching and Phototrophic Bacteria, 2nd. edn vol 1 New York: Springer; 2001 pp 359–367
    [Google Scholar]
  45. Hedlund BP, Gosink JJ, Staley JT. Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter. Antonie van Leeuwenhoek 1997; 72:29–38 [View Article]
    [Google Scholar]
  46. Choo YJ, Lee K, Song J, Cho JC. Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum ‘Verrucomicrobia’. Int J Syst Evol Microbiol 2007; 57:532–537 [View Article]
    [Google Scholar]
  47. Philip CB. Comments on the classification of the order Rickettsiales. Can J Microbiol 1956; 2:261–270 [View Article]
    [Google Scholar]
  48. Caspary R. Gesellschaften. Bericht über die Verhandlungen der botanischen Sektion der 33. Versammlung deutscher Naturforscher und Aerzte, gehalten in Bonn vom 18. bis 24. September 1857, von Dr. Rob. Caspary. Botanische Zeitung 1857; 15:749–776
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.005797
Loading
/content/journal/ijsem/10.1099/ijsem.0.005797
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error