1887

Abstract

Six conspecific yeast strains, representing an undescribed species, were isolated from rotten wood collected in different locations in Hungary and Germany and an additional one from fungal fruiting body in Taiwan. The seven strains share identical nucleotide sequences in the D1/D2 domain of the nuclear large subunit (LSU) rRNA gene. The Hungarian and Taiwanese isolates share identical internal transcribed spacer (ITS) sequences as well, while the two German isolates differ from them merely by three substitutions and four indels in this region. The investigated strains are very closely related to . Along their LSU D1/D2 domain they differ only by one substitution from the type strain of . However, in the ITS region of Hungarian and Taiwanese strains we detected 3.5 % divergence (nine substitutions and nine indels) between the undescribed species and , while the German strains differed by 13 substitutions and nine indels from . This ITS sequence divergence has raised the possibility that the strains investigated in this study may represent a different species from . This hypothesis was supported by comparisons of partial translation elongation factor 1-α (EF-1α) and cytochrome oxidase II (COX II) gene sequences. While no difference and 1–2 substitutions among the partial EF-1α and COX II gene sequences of the strains of the undescribed species, respectively, were detected; the undescribed species differ by about 4 % (36 substitutions) and 10 % (50–51 substitutions) from in these regions. Parsimony network analysis of the partial COX II gene sequences also separated the investigated strains from the type strain of . In this paper we propose f.a., sp. nov. (holotype: NCAIM Y.02121; isotypes: CBS 17819, DSM 114156) to accommodate the above-noted strains.

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2023-03-29
2024-05-10
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References

  1. Péter G, Dlauchy D, Price NPJ, Kurtzman CP. Diddensiella caesifluorescens gen. nov., sp. nov., a riboflavin-producing yeast species of the family Trichomonascaceae. Int J Syst Evol Microbiol 2012; 62:3081–3087 [View Article] [PubMed]
    [Google Scholar]
  2. Chai CY, Gao WL, Yan ZL, Hui FL. Four new species of Trichomonascaceae (Saccharomycetales, Saccharomycetes) from Central China. Mycokeys 2022; 90:1–18 [View Article]
    [Google Scholar]
  3. Lachance MA, Boekhout T, Scorzetti G, Fell JW, Kurtzman CP. Candida Berkhout (1923). In Kurtzman C, Fell JW, Boekhout T. eds The Yeasts: A Taxonomic Study Amsterdam: Elsevier; 2011
    [Google Scholar]
  4. Kurtzman CP, Fell JW, Boekhout T, Robert V. Methods for isolation, phenotypic characterization and maintenance of yeasts. In The Yeasts: A Taxonomic Study vol 1–3 Amsterdam: Elsevier; 2011 pp 87–110 [View Article]
    [Google Scholar]
  5. Dlauchy D, Tornai-Lehoczki J, Fulop L, Peter G. Pichia (Komagataella) pseudopastoris sp. nov., a new yeast species from Hungary. Antonie van Leeuwenhoek 2003; 83:327–332 [View Article]
    [Google Scholar]
  6. Large D, Walcher E. The Rammelsberg massive sulphide Cu-Zn-Pb-Ba-Deposit, Germany: an example of sediment-hosted, massive sulphide mineralisation. Mineralium Deposita 1999; 34:522–538 [View Article]
    [Google Scholar]
  7. Nirenberg H. Untersuchungen über die morphologische und biologische Differenzierung in der Fusarium-Sektion Liseola Berlin: Kommissionsverlag Paul Parey; 1976
    [Google Scholar]
  8. Kurtzman CP, Robnett CJ. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 1998; 73:331–371 [View Article]
    [Google Scholar]
  9. Péter G, Tornai-Lehoczki J, Dlauchy D. Candida ogatae sp. nov., an anamorphic member of the Kuraishia clade. FEMS Yeast Res 2009; 9:328–333 [View Article] [PubMed]
    [Google Scholar]
  10. Ye J, Coulouris G, Zaretskaya I, Cutcutache I, Rozen S et al. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 2012; 13:134 [View Article]
    [Google Scholar]
  11. Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J Comput Biol 2000; 7:203–214 [View Article] [PubMed]
    [Google Scholar]
  12. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article] [PubMed]
    [Google Scholar]
  13. Nei M, Kumar S. Molecular Evolution and Phylogenetics New York: Oxford University Press; 2000
    [Google Scholar]
  14. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article]
    [Google Scholar]
  15. Shen X-X, Opulente DA, Kominek J, Zhou X, Steenwyk JL et al. Tempo and mode of genome evolution in the budding yeast subphylum. Cell 2018; 175:1533–1545 [View Article]
    [Google Scholar]
  16. Kurtzman CP, Robnett CJ. Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species. FEMS Yeast Res 2013; 13:23–33 [View Article] [PubMed]
    [Google Scholar]
  17. Kurtzman CP, Robnett CJ. Three new anascosporic genera of the Saccharomycotina: Danielozyma gen. nov., Deakozyma gen. nov. and Middelhovenomyces gen. nov. Antonie van Leeuwenhoek 2014; 105:933–942 [View Article]
    [Google Scholar]
  18. Clement M, Posada D, Crandall KA. TCS: a computer program to estimate gene genealogies. Mol Ecol 2000; 9:1657–1659 [View Article] [PubMed]
    [Google Scholar]
  19. Vu D, Groenewald M, Szöke S, Cardinali G, Eberhardt U et al. DNA barcoding analysis of more than 9000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation. Stud Mycol 2016; 85:91–105 [View Article]
    [Google Scholar]
  20. Hart MW, Sunday J. Things fall apart: biological species form unconnected parsimony networks. Biol Lett 2007; 3:509–512 [View Article] [PubMed]
    [Google Scholar]
  21. Lachance MA, Dobson J, Wijayanayaka DN, Smith AME. The use of parsimony network analysis for the formal delineation of phylogenetic species of yeasts: Candida apicola, Candida azyma, and Candida parazyma sp. nov., cosmopolitan yeasts associated with floricolous insects. Antonie van Leeuwenhoek 2010; 97:155–170 [View Article]
    [Google Scholar]
  22. Péter G, Dlauchy D, Tornai-Lehoczki J, Suzuki M, Kurtzman CP. Spencermartinsiella europaea gen. nov., sp. nov., a new member of the family Trichomonascaceae. Int J Syst Evol Microbiol 2011; 61:993–1000 [View Article]
    [Google Scholar]
  23. Kurtzman C, Fell JW, Boekhout T. eds The Yeasts: a Taxonomic Study, 5th edn. Amsterdam: Elsevier; 2011
    [Google Scholar]
  24. Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993; 10:512–526 [View Article] [PubMed]
    [Google Scholar]
  25. Felsenstein J. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 1985; 39:783–791 [View Article]
    [Google Scholar]
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