1887

Abstract

A Gram-positive, facultatively anaerobic, catalase-negative, fructose-dependent strain (W13) was isolated from the gut of honeybee (). Phylogenetic analysis based on 16S rRNA gene sequencing indicated that strain W13 represents a distinct line of descent within the genus , with the closest neighbours being BCRC 81240 (98.9 % sequence similarity) and DSM 19113 (96.8 % sequence similarity). Comparative sequencing of the additional phylogenetic markers and confirmed the 16S rRNA gene tree topology. The complete genome of strain W13 consisted of 1 292 712 bp with a G+C content of 48.3 mol%. Pairwise comparisons of the average nucleotide identity values and digital DNA–DNA hybridization values between the genomes of W13 and its close phylogenetic neighbours, BCRC 81240 and DSM 19113, resulted in 76.2–84.1 % and 20.2–27.6 %, respectively. The main cellular fatty acids of strain W13 were C, C9 and C7. Thus, we propose a novel species within the genus , with the name sp. nov. and the type strain is W13 (= NBRC 115637=BCRC 81365).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.005613
2022-11-24
2024-04-26
Loading full text...

Full text loading...

References

  1. Endo A, Okada S. Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen. nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov. Int J Syst Evol Microbiol 2008; 58:2195–2205 [View Article]
    [Google Scholar]
  2. Lin S-T, Guu J-R, Wang H-M, Tamura T, Mori K et al. Fructobacillus papyriferae sp. nov., Fructobacillus papyrifericola sp. nov., Fructobacillus broussonetiae sp. nov. and Fructobacillus parabroussonetiae sp. nov., isolated from paper mulberry in Taiwan. Int J Syst Evol Microbiol 2022; 72: [View Article]
    [Google Scholar]
  3. Endo A, Irisawa T, Futagawa-Endo Y, Sonomoto K, Itoh K et al. Fructobacillus tropaeoli sp. nov., a fructophilic lactic acid bacterium isolated from a flower. Int J Syst Evol Microbiol 2011; 61:898–902 [View Article] [PubMed]
    [Google Scholar]
  4. Antunes A, Rainey FA, Nobre MF, Schumann P, Ferreira AM et al. Leuconostoc ficulneum sp. nov., a novel lactic acid bacterium isolated from a ripe fig, and reclassification of Lactobacillus fructosus as Leuconostoc fructosum comb. nov. Int J Syst Evol Microbiol 2002; 52:647–655 [View Article] [PubMed]
    [Google Scholar]
  5. Chambel L, Chelo IM, Zé-Zé L, Pedro LG, Santos MA et al. Leuconostoc pseudoficulneum sp. nov., isolated from a ripe fig. Int J Syst Evol Microbiol 2006; 56:1375–1381 [View Article] [PubMed]
    [Google Scholar]
  6. Takatani N, Endo A. Viable fructophilic lactic acid bacteria present in honeybee-based food products. FEMS Microbiol Lett 2021; 368:21–24 [View Article] [PubMed]
    [Google Scholar]
  7. Endo A, Salminen S. Honeybees and beehives are rich sources for Fructophilic lactic acid bacteria. Syst Appl Microbiol 2013; 36:444–448 [View Article] [PubMed]
    [Google Scholar]
  8. Chen YS, Liao YJ, Lan YS, Wu HC, Yanagida F. Diversity of lactic acid bacteria associated with banana fruits in Taiwan. Curr Microbiol 2017; 74:484–490 [View Article]
    [Google Scholar]
  9. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25:4876–4882 [View Article] [PubMed]
    [Google Scholar]
  10. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article]
    [Google Scholar]
  11. Chor B, Hendy MD, Snir S. Maximum likelihood Jukes-Cantor triplets: analytic solutions. Mol Biol Evol 2006; 23:626–632 [View Article] [PubMed]
    [Google Scholar]
  12. Rzhetsky A, Nei M. A simple method for estimating and testing minimum-evolution trees. Mol Biol Evol 1992; 9:945–967
    [Google Scholar]
  13. Tamura K, Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 1993; 10:512–526 [View Article] [PubMed]
    [Google Scholar]
  14. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article] [PubMed]
    [Google Scholar]
  15. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article] [PubMed]
    [Google Scholar]
  16. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article] [PubMed]
    [Google Scholar]
  17. Klimke W, Agarwala R, Badretdin A, Chetvernin S, Ciufo S et al. The National Center for Biotechnology Information’s protein clusters database. Nucleic Acids Res 2009; 37:D216–23 [View Article]
    [Google Scholar]
  18. Lee I, Ouk Kim Y, Park SC, Chun J. OrthoANI: an improved algorithm and software for calculating average nucleotide identity. Int J Syst Evol Microbiol 2016; 66:1100–1103 [View Article] [PubMed]
    [Google Scholar]
  19. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  20. Kozaki M, Uchimura T, Okada S. Experimental Manual of Lactic Acid Bacteria Tokyo: Asakurasyoten; 1992 pp 29–72
    [Google Scholar]
  21. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 1990; 20:16
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.005613
Loading
/content/journal/ijsem/10.1099/ijsem.0.005613
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error