1887

Abstract

A Gram-negative, rod-shaped, non-motile and strictly aerobic bacterium, designated NBU1238, was isolated from marine sediment sampled on Meishan Island located in the East China Sea. Strain NBU1238 was able to grow optimally at 28–32 °C, at pH 7.5 and with no NaCl. Catalase and oxidase activities, HS production and hydrolysis of Tweens 40 and 60 were positive. Methyl red reaction, Voges–Proskauer test and hydrolysis of starch, casein and Tweens 20 and 80 were negative. The major cellular fatty acids were iso-C, C, C 9 and C. The only respiratory quinone was menaquinone-9. The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and phosphatidylmethylethanolamine. The 16S rRNA gene sequence of strain NBU1238 showed 95.6, 95.6, 94.8 and 93.8% sequence similarity to GKX, G-1-1-1, MC 3726 and A4T-83, respectively. Phylogenetic analyses indicated that strain NBU1238 clustered with the genus and was closely related to strains GKX, MC 3726 and G-1-1-1. The average nucleotide identity and digital DNA–DNA hybridization values between strain NBU1238 and related species of genus were well below the threshold limit for prokaryotic species delineation. The DNA G+C content of the genomic DNA was 65.0 mol%. Based on its phenotypic, chemotaxonomic and genotypic data, strain NBU1238 is considered to be a representative of a novel species in the genus , for which the name sp. nov. is proposed. The type strain is NBU1238 (=KCTC 82227=MCCC 1K04772).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.005544
2022-10-18
2024-05-18
Loading full text...

Full text loading...

References

  1. Yoon J, Matsuo Y, Adachi K, Nozawa M, Matsuda S et al. Description of Persicirhabdus sediminis gen. nov., sp. nov., Roseibacillus ishigakijimensis gen. nov., sp. nov., Roseibacillus ponti sp. nov., Roseibacillus persicicus sp. nov., Luteolibacter pohnpeiensis gen. nov., sp. nov. and Luteolibacter algae sp. nov., six marine members of the phylum “Verrucomicrobia”, and emended descriptions of the class Verrucomicrobiae, the order Verrucomicrobiales and the family Verrucomicrobiaceae. Int J Syst Evol Microbiol 2008; 58:998–1007 [View Article]
    [Google Scholar]
  2. Busse H-J, Kämpfer P, Szostak MP, Spergser J. Luteolibacter ambystomatis sp. nov., isolated from the skin of an Anderson’s salamander (Ambystoma andersoni). Int J Syst Evol Microbiol 2008; 71:5043 [View Article] [PubMed]
    [Google Scholar]
  3. Kim M, Pak S, Rim S, Ren L, Jiang F et al. Luteolibacter arcticus sp. nov., isolated from high Arctic tundra soil, and emended description of the genus Luteolibacter. Int J Syst Evol Microbiol 2015; 65:1922–1928 [View Article] [PubMed]
    [Google Scholar]
  4. Glaeser SP, Galatis H, Martin K, Kämpfer P. Luteolibacter cuticulihirudinis sp. nov., isolated from Hirudo medicinalis. Antonie van Leeuwenhoek 2012; 102:319–324 [View Article] [PubMed]
    [Google Scholar]
  5. Zhang C, Dong B, Wang R, Su Y, Han S et al. Luteolibacter flavescens sp. nov., isolated from deep seawater. Int J Syst Evol Microbiol 2017; 67:729–735 [View Article] [PubMed]
    [Google Scholar]
  6. Pascual J, García-López M, González I, Genilloud O. Luteolibacter gellanilyticus sp. nov., a gellan-gum-degrading bacterium of the phylum Verrucomicrobia isolated from miniaturized diffusion chambers. Int J Syst Evol Microbiol 2017; 67:3951–3959 [View Article] [PubMed]
    [Google Scholar]
  7. Jiang F, Li W, Xiao M, Dai J, Kan W et al. Luteolibacter luojiensis sp. nov., isolated from Arctic tundra soil, and emended description of the genus Luteolibacter. Int J Syst Evol Microbiol 2012; 62:2259–2263 [View Article] [PubMed]
    [Google Scholar]
  8. Dahal RH, Chaudhary DK, Kim DU, Kim J. Luteolibacter luteus sp. nov., isolated from stream bank soil. Arch Microbiol 2021; 203:377–382 [View Article] [PubMed]
    [Google Scholar]
  9. Park J, Baek GS, Woo S-G, Lee J, Yang J et al. Luteolibacter yonseiensis sp. nov., isolated from activated sludge using algal metabolites. Int J Syst Evol Microbiol 2013; 63:1891–1895 [View Article] [PubMed]
    [Google Scholar]
  10. Dong XZ, Cai MY. Determinative Manual for Routine Bacteriology, 1st edn. Beijing: Scientific Press; 2001 pp 353–364
    [Google Scholar]
  11. Zhu XF. Modern Experimental Technique of Microbiology Hangzhou: Zhejiang University Press; 2011
    [Google Scholar]
  12. Zhang W, Zhu S, Cheng Y, Ding L, Li S et al. Rheinheimera mangrovi sp. nov., a bacterium isolated from mangrove sediment. Int J Syst Evol Microbiol 2020; 70:6188–6194 [View Article] [PubMed]
    [Google Scholar]
  13. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  14. Kates M. Techniques of Lipidology: Isolation, Analysis and Identification of Lipids, 2nd edn. Amsterdam: Elsevier; 1986
    [Google Scholar]
  15. Zhang X-Q, Sun C, Wang C-S, Zhang X, Zhou X et al. Sinimarinibacterium flocculans gen. nov., sp. nov., a gammaproteobacterium from offshore surface seawater. Int J Syst Evol Microbiol 2015; 65:3541–3546 [View Article]
    [Google Scholar]
  16. Sun C, Wu C, Su Y, Wang R-J, Fu G-Y et al. Hyphococcus flavus gen. nov., sp. nov., a novel alphaproteobacterium isolated from deep seawater. Int J Syst Evol Microbiol 2017; 67:4024–4031 [View Article]
    [Google Scholar]
  17. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  18. Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article]
    [Google Scholar]
  19. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article] [PubMed]
    [Google Scholar]
  20. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Biol 1971; 20:406–416 [View Article]
    [Google Scholar]
  21. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article] [PubMed]
    [Google Scholar]
  22. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article] [PubMed]
    [Google Scholar]
  23. Li R, Li Y, Kristiansen K, Wang J. SOAP: short oligonucleotide alignment program. Bioinformatics 2008; 24:713–714 [View Article] [PubMed]
    [Google Scholar]
  24. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  25. Yoon SH, Ha SM, Lim JM, Kwon SJ, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017; 110:1281–1286 [View Article] [PubMed]
    [Google Scholar]
  26. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article]
    [Google Scholar]
  27. Moore WEC, Stackebrandt E, Kandler O, Colwell RR, Krichevsky MI et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 1987; 37:463–464 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.005544
Loading
/content/journal/ijsem/10.1099/ijsem.0.005544
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error