1887

Abstract

The species Sesma and Ramirez was delineated based on the description of the single strain CBS 139.77. Based on its phenotypic similarities to , CBS 139.77 was later considered a synonym of . In the present study, we isolated the yeast strain IST 508 (=PYCC 8784=CBS 16671) from the soil surrounding an olive tree in Ferreira do Alentejo, Portugal. The phylogenetic analysis of D1/D2 domain and ITS sequences from strain IST 508 indicates that is closely related to . Although strain IST 508 differs from CBS 139.77 by 14 substitutions and 20 indels (6.6 % divergence) in the ITS sequence, no divergence was detected at the level of D1/D2 domain, mitochondrial small subunit rDNA, and cytochrome oxidase II sequences. On the other hand, strains IST 508 and CBS 139.77 differ from NRRL Y-17577 by eight substitutions (1.4 % divergence) in the D1/D2 domain sequence, by 16 substitutions (2.7 % divergence) in the cytochrome oxidase II sequence, and by 16 substitutions (3.7 % divergence) in the mitochondrial small subunit rDNA sequence. Due to the high number of variable phenotypic tests in and , strains from the two species are difficult to distinguish. Contrasting with what is described for other species, no differences were detected at the level of micromorphology between the two species. Nevertheless, based on the molecular differences between the two strains, CBS 139.77 and IST 508, and NRRL Y-17577 and their phylogenetic analysis, strains CBS 139.77 and IST 508 are from and this species should be considered as an independent species and not a later synonym of . We propose an emended description of .

Funding
This study was supported by the:
  • Fundação para a Ciência e a Tecnologia (Award LA/P/0140/2020)
  • Fundação para a Ciência e a Tecnologia (Award UIDP/04565/2020)
  • Fundação para a Ciência e a Tecnologia (Award UIDB/04565/2020)
  • Fundação para a Ciência e a Tecnologia (Award ERA-IB-2/0003/2015)
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.005388
2022-05-04
2024-05-06
Loading full text...

Full text loading...

References

  1. Klopotek A. Blastobotrys nivea gen.nov., sp.nov. Archiv Mikrobiol 1967; 58:92–96 [View Article]
    [Google Scholar]
  2. Kurtzman CP, Robnett CJ. Molecular relationships among hyphal ascomycetous yeasts and yeastlike taxa. Can J Bot 1995; 73:824–830 [View Article]
    [Google Scholar]
  3. Kurtzman CP, Robnett CJ. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 1998; 73:331–371 [View Article] [PubMed]
    [Google Scholar]
  4. Kurtzman CP, Robnett CJ. Multigene phylogenetic analysis of the Trichomonascus, Wickerhamiella and Zygoascus yeast clades, and the proposal of Sugiyamaella gen. nov. and 14 new species combinations. FEMS Yeast Res 2007; 7:141–151 [View Article] [PubMed]
    [Google Scholar]
  5. Smith MT, de Hoog GS, Malloch D, Kurtzman CP. Trichomonascus H.S: Jackson emend. Kurtzman & Robnett (2007). In Kurtzman CP, Fell JW, Boekhout T. eds The Yeasts: A Taxonomic Study Elsevier; 2011 pp 875–881
    [Google Scholar]
  6. Smith MT, de Hoog GS, Statzell-Tallman A, Kurtzman CP. Blastobotrys von Klopotek (1967). In Kurtzman CP, Fell JW, Boekhout T. eds The Yeasts: A Taxonomic Study, 5th edn. Elsevier; 2011 pp 959–977
    [Google Scholar]
  7. Sylvester K, Wang QM, James B, Mendez R, Hulfachor AB et al. Temperature and host preferences drive the diversification of Saccharomyces and other yeasts: A survey and the discovery of eight new yeast species. FEMS Yeast Res 2015; 15:1–16 [View Article] [PubMed]
    [Google Scholar]
  8. Barbosa RN, Boekhout T, Silva GA, Souza-Motta CM, Oliveira N. Blastobotrys meliponae. Persoonia - Mol Phylogeny Evol Fungi 2016; 36:442–443
    [Google Scholar]
  9. Barretto DA, Avchar R, Carvalho C, Sampaio JP, Vootla SK et al. Blastobotrys bombycis sp. nov., a d-xylose-fermenting yeast isolated from the gut of the silkworm larva Bombyx mori. Int J Syst Evol Microbiol 2018; 68:2638–2643 [View Article] [PubMed]
    [Google Scholar]
  10. Nouri H, Moghimi H, Geranpayeh Vaghei M, Nasr S. Blastobotrys persicus sp. nov., an ascomycetous yeast species isolated from cave soil. Antonie van Leeuwenhoek 2018; 111:517–524 [View Article] [PubMed]
    [Google Scholar]
  11. Chai C-Y, Jia R-R, Chen C-Y, Hui F-L. Blastobotrys baotianmanensis sp. nov. and Blastobotrys xishuangbannaensis f.a., sp. nov., two novel yeast species associated with insects and rotting wood. Int J Syst Evol Microbiol 2020; 70:4217–4223 [View Article] [PubMed]
    [Google Scholar]
  12. Sesma B, Ramirez C. A new species of Blastobotrys: Blastobotrys navarrensis sp. nov. (Hyphomycetes). Mycopathologia 1978; 63:41–45 [View Article]
    [Google Scholar]
  13. de Hoog GS, Rantio-Lehtimäki AH, Smith MT. Blastobotrys, Sporothrix and Trichosporiella: generic delimitation, new species, and a Stephanoascus teleomorph. Antonie van Leeuwenhoek 1985; 51:79–109 [View Article] [PubMed]
    [Google Scholar]
  14. Kurtzman CP. Blastobotrys americana sp. nov., Blastobotrys illinoisensis sp. nov., Blastobotrys malaysiensis sp. nov., Blastobotrys muscicola sp. nov., Blastobotrys peoriensis sp. nov. and Blastobotrys raffinosifermentans sp. nov., novel anamorphic yeast species. Int J Syst Evol Microbiol 2007; 57:1154–1162 [View Article]
    [Google Scholar]
  15. Anjos L, Gaistardo C, Deckers J, Dondeyne S, Eberhardt E et al. World reference base for soil resources 2014 International soil classification system for naming soils and creating legends for soil maps. Rome, Italy: FAO; 2015
  16. Instituto Português do Mar e da Atmosfera Normais climatológicas - 1971-2000; 2020 http://www.ipma.pt/pt/oclima/normais.clima/1971-2000/index.jsp#562
  17. Zaky AS, Greetham D, Louis EJ, Tucker GA, Du C. A new isolation and evaluation method for marine-derived yeast spp. with potential applications in industrial biotechnology. J Microbiol Biotechnol 2016; 26:1891–1907 [View Article] [PubMed]
    [Google Scholar]
  18. Hoffman CS. Preparation of yeast DNA. Curr Protoc Mol Biol 2001; 39:13.11.1-13.11.4 [View Article] [PubMed]
    [Google Scholar]
  19. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990; 215:403–410 [View Article] [PubMed]
    [Google Scholar]
  20. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004; 32:1792–1797 [View Article] [PubMed]
    [Google Scholar]
  21. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article] [PubMed]
    [Google Scholar]
  22. Kurtzman CP, Fell JW, Boekhout T, Robert V. Methods for isolation, phenotypic characterization and maintenance of yeasts. In Kurtzman CP, Fell JW, Boekhout T, Robert V. eds Yeasts. A Taxon. Study Elsevier; 2011 pp 87–110
    [Google Scholar]
  23. Madeira F, Park YM, Lee J, Buso N, Gur T et al. The EMBL-EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Res 2019; 47:W636–W641 [View Article] [PubMed]
    [Google Scholar]
  24. Kurtzman CP. Yeast species recognition from gene sequence analyses and other molecular methods. Mycoscience 2006; 47:65–71 [View Article]
    [Google Scholar]
  25. Boekhout T, Aime MC, Begerow D, Gabaldón T, Heitman J et al. The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks. Fungal Divers 2021; 109:27–55 [View Article] [PubMed]
    [Google Scholar]
  26. Coleman AW. Nuclear rRNA transcript processing versus internal transcribed spacer secondary structure. Trends Genet 2015; 31:157–163 [View Article] [PubMed]
    [Google Scholar]
  27. Elder JF, Turner BJ. Concerted evolution of repetitive DNA sequences in eukaryotes. Q Rev Biol 1995; 70:297–320 [View Article] [PubMed]
    [Google Scholar]
  28. Sipiczki M, Pfliegler WP, Holb IJ. Metschnikowia species share a pool of divSpecies Share a Pool of Diverse rRNA genes differing in regions that determine hairpin-loop structures and evolve by reticulGenes Differing in Regions That Determine Hairpin-Loop Structures and Evolve by Reticulation. PLoS One 2013; 8:e67384 [View Article] [PubMed]
    [Google Scholar]
  29. Sipiczki M, Horvath E, Pfliegler WP. Birth-and-death evolution and reticulation of ITS segments of Metschnikowia andauensis and Metschnikowia fructicola rDNA repeats. Front Microbiol 2018; 9:1193 [View Article] [PubMed]
    [Google Scholar]
  30. Lachance MA, Daniel HM, Meyer W, Prasad GS, Gautam SP et al. The D1/D2 domain of the large-subunit rDNA of the yeast species Clavispora lusitaniae is unusually polymorphic. FEMS Yeast Res 2003; 4:253–258 [View Article] [PubMed]
    [Google Scholar]
  31. Vu D, Groenewald M, Szöke S, Cardinali G, Eberhardt U et al. DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation. Stud Mycol 2016; 85:91–105 [View Article] [PubMed]
    [Google Scholar]
  32. Kiss L. Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for fungi. Proc Natl Acad Sci USA 2012; 109:E1811-E1812 [View Article] [PubMed]
    [Google Scholar]
  33. Kurtzman CP, Robnett CJ. Phylogenetic relationships among yeasts of the “Saccharomyces complex” determined from multigene sequence analyses. FEMS Yeast Res 2003; 3:417–432 [View Article] [PubMed]
    [Google Scholar]
  34. Kurtzman CP, Robnett CJ, Ward JM, Brayton C, Gorelick P et al. Multigene phylogenetic analysis of pathogenic candida species in the Kazachstania (Arxiozyma) telluris complex and description of their ascosporic states as Kazachstania bovina sp. nov., K. heterogenica sp. nov., K. pintolopesii sp. nov., and K. slooffiae sp. nov. J Clin Microbiol 2005; 43:101–111 [View Article] [PubMed]
    [Google Scholar]
  35. Čadež N, Bellora N, Ulloa R, Hittinger CT, Libkind D. Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina. PLoS One 2019; 14:e0210792 [View Article]
    [Google Scholar]
  36. Marvanová L. Two new Blastobotrys species. Trans Brit Mycol Soc 1976; 66:217–222 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.005388
Loading
/content/journal/ijsem/10.1099/ijsem.0.005388
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error