1887

Abstract

A Gram-stain-negative bacterial strain, designated as E165, was isolated from a tidal flat sediment of the East China Sea. Strain E165 grew optimally at pH 6, at 32 °C and with 1–2 % (w/v) NaCl. The 16S rRNA gene sequence similarity results revealed that strain E165 was most closely related to IVIA-Po-145, CK13, IVIA-Po-155, HDW-15, 46-16, B20-1 and DSL-35 with values of 97.0–98.5 %. The digital DNA–DNA hybridization and average nucleotide identity values between strain E165 and the reference strains were 21.9–34.3 % and 77.6–87.3 %, respectively. The DNA G+C content of the isolate was 42.9 mol%. Strain E165 contained Q-8 as the sole ubiquinone and C, summed feature 8 (C 7 and/or C 6) and summed feature 3 (C 7 and/or C 6) as the major fatty acids. The major polar lipids of strain E165 were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, aminolipid and aminophospholipid. On the basis of phenotypic characteristics, phylogenetic analysis and DNA–DNA relatedness, a novel species, sp. nov., is proposed with E165 (=MCCC 1K06241=KCTC 82809) as the type strain.

Funding
This study was supported by the:
  • the Ministry of Science and Technology Award (Award 2018YFA0605802)
    • Principle Award Recipient: PengWang
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2022-05-12
2024-05-05
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References

  1. Van Landschoot A, De Ley J. Intra- and Intergeneric Similarities of the rRNA cistrons of Alteromonas, Marinomonas (gen. nov.) and some other Gram-negative bacteria. Microbiology 1983; 129:3057–3074 [View Article]
    [Google Scholar]
  2. Van Landschoot A, Ley JD. Validation of the publication of new names and new combinations previously effectively published outside the IJSB: List No. 13. Int J Syst Bacteriol 1984; 34:91–92 [View Article]
    [Google Scholar]
  3. Baumann L, Baumann P, Mandel M, Allen RD. Taxonomy of aerobic marine eubacteria. J Bacteriol 1972; 110:402–429 [View Article] [PubMed]
    [Google Scholar]
  4. Ying J-J, Fang Y-C, Ye Y-L, Wu Z-C, Xu L et al. Marinomonas vulgaris sp. nov., a marine bacterium isolated from seawater in a coastal intertidal zone of Zhoushan island. Arch Microbiol 2021; 203:5133–5139 [View Article] [PubMed]
    [Google Scholar]
  5. Gupta P, Chaturvedi P, Pradhan S, Delille D, Shivaji S. Marinomonas polaris sp. nov., a psychrohalotolerant strain isolated from coastal sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 2006; 56:361–364 [View Article] [PubMed]
    [Google Scholar]
  6. Hu M, Zhai Y, Zhang Y, Han X, Fang W et al. Marinomonas flavescens sp. nov., isolated from seawater adjacent to Fildes Peninsula, Antarctica. Int J Syst Evol Microbiol 2019; 69:3414–3419 [View Article] [PubMed]
    [Google Scholar]
  7. Jung YT, Oh TK, Yoon JH. Marinomonas hwangdonensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 2012; 62:2062–2067 [View Article] [PubMed]
    [Google Scholar]
  8. Kristyanto S, Chaudhary DK, Lee SS, Kim J. Characterization of Marinomonas algicida sp. nov., a novel algicidal marine bacterium isolated from seawater. Int J Syst Evol Microbiol 2017; 67:4777–4784 [View Article]
    [Google Scholar]
  9. Li Y, Sun X-M, Li J, Song X-Y, Qin Q-L et al. Marinomonas profundi sp. nov., isolated from deep seawater of the Mariana Trench. Int J Syst Evol Microbiol 2020; 70:5747–5752 [View Article] [PubMed]
    [Google Scholar]
  10. Prabagaran SR, Suresh K, Manorama R, Delille D, Shivaji S. Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica. Int J Syst Evol Microbiol 2005; 55:309–313 [View Article] [PubMed]
    [Google Scholar]
  11. Yoon JH, Kang SJ, Oh TK. Marinomonas dokdonensis sp. nov., isolated from sea water. Int J Syst Evol Microbiol 2005; 55:2303–2307 [View Article] [PubMed]
    [Google Scholar]
  12. Macián MC, Arahal DR, Garay E, Pujalte MJ. Marinomonas aquamarina sp. nov., isolated from oysters and seawater. Syst Appl Microbiol 2005; 28:145–150 [View Article] [PubMed]
    [Google Scholar]
  13. Bai X, Lai Q, Dong C, Li F, Shao Z. Marinomonas profundimaris sp. nov., isolated from deep-sea sediment sample of the Arctic Ocean. Antonie van Leeuwenhoek 2014; 106:449–455 [View Article] [PubMed]
    [Google Scholar]
  14. Romanenko LA, Tanaka N, Frolova GM. Marinomonas arenicola sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 2009; 59:2834–2838 [View Article] [PubMed]
    [Google Scholar]
  15. Yu L, Zhou Z, Wei S, Xu X, Wang Q et al. Marinomonas piezotolerans sp. nov., isolated from deep-sea sediment of the Yap Trench, Pacific Ocean. Int J Syst Evol Microbiol 2019; 69:739–744 [View Article] [PubMed]
    [Google Scholar]
  16. Zhang DC, Margesin R. Marinomonas mangrovi sp. nov., isolated from mangrove sediment. Int J Syst Evol Microbiol 2015; 65:1537–1541 [View Article] [PubMed]
    [Google Scholar]
  17. Kumari P, Poddar A, Das SK. Marinomonas fungiae sp. nov., isolated from the coral Fungia echinata from the Andaman Sea. Int J Syst Evol Microbiol 2014; 64:487–494 [View Article] [PubMed]
    [Google Scholar]
  18. Espinosa E, Marco-Noales E, Gómez D, Lucas-Elío P, Ordax M et al. Taxonomic study of Marinomonas strains isolated from the seagrass Posidonia oceanica, with descriptions of Marinomonas balearica sp. nov. and Marinomonas pollencensis sp. nov. Int J Syst Evol Microbiol 2010; 60:93–98 [View Article] [PubMed]
    [Google Scholar]
  19. Ojha AK, Verma A, Pal Y, Bhatt D, Mayilraj S et al. Marinomonas epiphytica sp. nov., isolated from a marine intertidal macroalga. Int J Syst Evol Microbiol 2017; 67:2746–2751 [View Article] [PubMed]
    [Google Scholar]
  20. Sun X-M, Chen C, Xue Z, He X-Y, Liu N-H et al. Marinomonas algicola sp. nov. and Marinomonas colpomeniae sp. nov., isolated from marine macroalgae. Int J Syst Evol Microbiol 2019; 71: [View Article]
    [Google Scholar]
  21. Lasa A, Pichon P, Diéguez AL, Romalde JL. Marinomonas gallaica sp. nov. and Marinomonas atlantica sp. nov., isolated from reared clams (Ruditapes decussatus). Int J Syst Evol Microbiol 2016; 66:3183–3188 [View Article]
    [Google Scholar]
  22. Ivanova EP, Onyshchenko OM, Christen R, Lysenko AM, Zhukova NV et al. Marinomonas pontica sp. nov., isolated from the Black Sea. Int J Syst Evol Microbiol 2005; 55:275–279 [View Article] [PubMed]
    [Google Scholar]
  23. Gürtler V, Stanisich VA. New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 1996; 142:3–16 [View Article] [PubMed]
    [Google Scholar]
  24. Kim O-S, Cho Y-J, Lee K, Yoon S-H, Kim M et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62:716–721 [View Article] [PubMed]
    [Google Scholar]
  25. Kumar S, Stecher G, Li M, Knyaz C, Tamura K et al. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article] [PubMed]
    [Google Scholar]
  26. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article] [PubMed]
    [Google Scholar]
  27. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article] [PubMed]
    [Google Scholar]
  28. Meier-Kolthoff JP, Göker M. TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nat Commun 2019; 10:2182 [View Article] [PubMed]
    [Google Scholar]
  29. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P et al. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 2007; 57:81–91 [View Article] [PubMed]
    [Google Scholar]
  30. Meier-Kolthoff JP, Auch AF, Klenk H-P, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  31. Richter M, Rosselló-Móra R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article] [PubMed]
    [Google Scholar]
  32. Tindall BJ. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 1990; 66:199–202
    [Google Scholar]
  33. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids, MIDI Technical Note 101. Newark, DE: MIDI Inc; 1990
  34. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  35. Wei Y, Cao J, Mao H, Pei J, Liu R et al. Marinomonas shanghaiensis sp. nov., isolated from the junction between an ocean and a freshwater lake. Int J Syst Evol Microbiol 2019; 69:805–810 [View Article] [PubMed]
    [Google Scholar]
  36. Lucas-Elío P, Marco-Noales E, Espinosa E, Ordax M, López MM et al. Marinomonas alcarazii sp. nov., M. rhizomae sp. nov., M. foliarum sp. nov., M. posidonica sp. nov. and M. aquiplantarum sp. nov., isolated from the microbiota of the seagrass Posidonia oceanica. Int J Syst Evol Microbiol 2011; 61:2191–2196 [View Article]
    [Google Scholar]
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