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Abstract

A Gram-stain-negative, rod-shaped bacterial strain, designated SW123, was isolated from a deep-sea water sample collected from the Indian Ocean. Strain SW123 was strictly aerobic, catalase- and oxidase-positive. The predominant cellular fatty acids were iso-C, iso-C and summed feature 9 (comprising C-methyl or iso-C 9). Ubiquinone-8 was the sole respiratory quinone. The major polar lipids consisted of diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylglycerol. The genomic DNA G+C content was 49.4 mol%. 16S rRNA gene sequence analysis showed that strain SW123 was closely related to AIS (96.7 % sequence similarity), GBPy7 (96.3%), AK5 (96.0%) and F3105 (95.9%). Phylogenetic trees based on 16S rRNA gene sequences showed that strain SW123 represented a novel member of the genus , forming a distinct cluster with F3105. On the basis of phylogenetic inference and phenotypic characteristics, we propose that strain SW123 represents a novel species of the genus , with the name sp. nov. The type strain is SW123 (=CGMCC1.16169=KCTC 82234).

Funding
This study was supported by the:
  • China Ocean Mineral Resources Research and Development Association (Award DY135-B2-02)
    • Principle Award Recipient: LeiSong
  • Key Technologies Research and Development Program (Award 2018YFC0310703)
    • Principle Award Recipient: YingHuang
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/content/journal/ijsem/10.1099/ijsem.0.005122
2021-12-08
2024-05-06
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References

  1. Huang SP, Chang HY, Chen JS, Jean WD, Shieh WY. Aliidiomarina taiwanensis gen. nov., sp. nov., isolated from shallow coastal water. Int J Syst Evol Microbiol 2012; 62:155–161
    [Google Scholar]
  2. Chiu H-H, Rogozin DY, Huang S-P, Degermendzhy AG, Shieh WY et al. Aliidiomarina shirensis sp. nov., a halophilic bacterium isolated from Shira Lake in Khakasia, southern Siberia, and a proposal to transfer Idiomarina maris to the genus Aliidiomarina. Int J Syst Evol Microbiol 2014; 64:1334–1339 [View Article]
    [Google Scholar]
  3. Ali Amoozegar M, Shahinpei A, Abolhassan Shahzadeh Fazeli S, Schumann P, Spröer C et al. Aliidiomarina iranensis sp. nov., a haloalkaliphilic bacterium from a coastal-marine wetland. Int J Syst Evol Microbiol 2016; 66:2099–2105 [View Article]
    [Google Scholar]
  4. Xu L, Sun JQ, Wang LJ, Liu XZ, Ji YY. Aliidiomarina soli sp. nov. isolated from saline-alkaline soil. Int J Syst Evol Microbiol 2016; 67:2829–2833
    [Google Scholar]
  5. Shahinpei A, Amoozegar MA, Shahzadeh Fazeli SA, Schumann P, Spröer C et al. Aliidiomarina sedimenti sp. nov., a haloalkaliphilic bacterium in the family Idiomarinaceae. Int J Syst Evol Microbiol 2017; 67:2087–2092 [View Article]
    [Google Scholar]
  6. Chen SY, Dong XZ. Acetanaerobacterium elongatum gen. nov., sp. nov., from paper mill waste water. Int J Syst Evol Microbiol 2004; 54:2257–2262
    [Google Scholar]
  7. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y et al. troducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article]
    [Google Scholar]
  8. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874
    [Google Scholar]
  9. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425
    [Google Scholar]
  10. Fitch WM. Toward defining the course of evolution: minimum change for a Specific Tree Topology. Syst Biol 1971; 20:406–416 [View Article]
    [Google Scholar]
  11. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article]
    [Google Scholar]
  12. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16:111–120 [View Article]
    [Google Scholar]
  13. Stackebrandt E, Ebers J. Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 2006; 33:152–155
    [Google Scholar]
  14. Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 2015; 25:1043–1055 [View Article]
    [Google Scholar]
  15. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article]
    [Google Scholar]
  16. Yoon SH, Ha SM, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017; 110:1281–1286
    [Google Scholar]
  17. Na S-I, Kim YO, Yoon S-H, Ha S, Baek I et al. UBCG: up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction. J Microbiol 2018; 56:280–285
    [Google Scholar]
  18. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018; 68:461–466 [View Article]
    [Google Scholar]
  19. Dong XZ, Cai MY. Determinative Manual for Routine Bacteriology Beijing: Scientific Press (English translation; 2001
    [Google Scholar]
  20. Song L, Liu HC, Huang Y, Dai X, Zhou YG. Pleomorphovibrio marinus gen. nov., sp. nov., isolated from deep-sea sediment. Int J Syst Evol Microbiol 2019; 69:3723–3727
    [Google Scholar]
  21. Zhong Z-P, Liu Y, Liu H-C, Wang F, Zhou Y-G et al. Roseibium aquae sp. nov., isolated from a saline lake. Int J Syst Evol Microbiol 2014; 64:2812–2818
    [Google Scholar]
  22. Bernardet JF, Nakagawa Y, Holmes B. Subcommittee on the Taxonomy of Flavobacterium and Cytophaga-Like Bacteria of the International Committee on Systematics of Prokaryotes Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049–1070
    [Google Scholar]
  23. Tindall BJ. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 1990; 66:199–202
    [Google Scholar]
  24. Embley TM, Wait R. Structural lipids of eubacteria. In Goodfellow M, O’Donnell AG. eds Chemical Methods in Prokaryotic Systematics Chichester: Wiley; 1994 pp 121–161
    [Google Scholar]
  25. Wang XT, Han JR, Zheng WS, Zhang XK, Du ZJ. Aliidiomarina celeris sp. nov., isolated from coastal sediment. Int J Syst Evol Microbiol 2019; 69:171–176
    [Google Scholar]
  26. Srinivas TNR, Nupur Anil Kumar P. Aliidiomarina haloalkalitolerans sp. nov., a marine bacterium isolated from coastal surface seawater. Antonie van Leeuwenhoek 2012; 101:761–768
    [Google Scholar]
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