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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 71, Issue 8

sp. nov., isolated from agricultural soil and involved in lignocellulose deconstruction Open Access

Abstract

A bacterial strain, arapr2, was isolated from agricultural soil sampled in Reims, France. Based on its 16S rRNA gene sequence, the strain was affiliated to the family and more specifically to the genus . The strain had 98.31 % 16S rRNA gene sequence similarity to its closest relative CR11 and 98.25 % to NCCP-246. Genome relatedness indexes revealed that the average nucleotide identity (ANI) and digital DNA–DNA hybridization (dDDH) values between arapr2 and its closest relative ( CR11) were 92.97 % and 52.00 %, respectively; for NCCP-246, the ANI and dDDH values were 82.46 and 27.6%, respectively. The genomic DNA of strain arapr2 was 6.02 Mbp long, had a DNA G+C content of 40.4 mol% and had 5504 protein-coding genes. The results obtained in this study suggests that strain arapr2 (CIP 111872=LMG 31848) represents a new species for which the name sp. nov. is proposed. Due to the fact that this strain has been isolated using wheat straw as carbon source, this novel bacterial strain represents a promising biotechnological tool for the fractionation of lignocellulosic biomass in the context of biorefinery development.

  • Received:
  • Accepted:
  • Published Online:
Keyword(s): CAZymes , lignocellulose and Sphingobacterium
Funding
This study was supported by the:
  • French Region Grand Est, Grand Reims and the European Regional Development Fund (ERDF)
    • Principle Award Recipient: ludovicBesaury
© 2021 The Authors
  • This is an open-access article distributed under the terms of the Creative Commons Attribution NonCommercial License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
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2021-08-18
2024-05-01
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Sphingobacterium prati sp. nov., isolated from agricultural soil and involved in lignocellulose deconstruction
Int J Syst Evol Microbiol 71, 004963 (2021); https://doi.org/10.1099/ijsem.0.004963
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