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Abstract

An aerobic, Gram-stain-negative, bacterium, designated CLL3-39 was isolated from seashore sediment collected at a forest in the Marine Ecology Special Reserve of Changyi, Shandong Province, PR China. Cells of strain CLL3-39 were olive-shaped and no flagellum was observed. Strain CLL3-39 grew optimally at 33 °C, pH 7.5 and salinity (sea salts) of 40 g l. The main fatty acids in the cell membrane of strain CLL3-39 comprised anteiso-C (22.3 %), iso-C (14.0 %), C (9.2 %) and summed feature 8 (contains C 7/C 6. 26. 7 %). The main polar lipids of CLL3-39 were phosphatidylglycerol, diphosphatidylglycerol and phosphatidylcholine. The respiratory quinone was Q10. The G+C content of the genomic DNA of strain CLL3-39 was 69.6 mol%. The average nucleotide identity between CLL3-39 and DB-4 was 74.7 % and the DNA–DNA hybridization value was 20.1 %. Phylogenetically, strain CLL3-39 belonged to the genus , branching with only one type strain DB-4 with 96.3 % 16S rRNA gene similarity, followed by LL-001 (95.2 %). Based on its phenotypic, phylogenetic and chemotaxonomic characteristics, we propose strain CLL3-39 (=MCCC 1A14815 KCTC 72665) as a representative of a novel species in the genus , for which the name sp. nov. is proposed.

Funding
This study was supported by the:
  • Scientific Research Foundation of Third Institute of Oceanography, MNR (Award No. NMRC(2019012))
    • Principle Award Recipient: ShaoZongze
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/content/journal/ijsem/10.1099/ijsem.0.004908
2021-07-29
2024-05-02
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References

  1. Park S, Jung YT, Yoon JH. Pseudoroseicyclus aestuarii gen. nov., sp. nov., isolated from a tidal flat. Int J Syst Evol Microbiol 2016; 66:2165–2171 [View Article] [PubMed]
    [Google Scholar]
  2. Inagaki F, Suzuki M, Takai K, Oida H, Sakamoto T et al. Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of okhotsk. Appl Environ Microbiol 2003; 69:7224–7235 [View Article] [PubMed]
    [Google Scholar]
  3. González JM, Simó R, Massana R, Covert JS, Casamayor EO et al. Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom. Appl Environ Microbiol 2000; 66:4237–4246 [View Article] [PubMed]
    [Google Scholar]
  4. Junge K, Imhoff F, Staley T, Deming W. Phylogenetic diversity of numerically important Arctic sea-ice bacteria cultured at subzero temperature. Microb Ecol 2002; 43:315–328 [View Article] [PubMed]
    [Google Scholar]
  5. Buchan A, Gonzalez JM, Moran MA. Overview of the marine roseobacter lineage. Appl Environ Microbiol 2005; 71:5665–5677 [View Article] [PubMed]
    [Google Scholar]
  6. Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 1991; 173:697–703 [View Article] [PubMed]
    [Google Scholar]
  7. Yoon S-H, Ha S-M, Kwon S, Lim J, Kim Y. Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617 [View Article] [PubMed]
    [Google Scholar]
  8. Chun J, Oren A, Ventosa A, Christensen H, Arahal D et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018; 68:461–466 [View Article] [PubMed]
    [Google Scholar]
  9. Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M et al. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012; 19:455–477 [View Article] [PubMed]
    [Google Scholar]
  10. Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 2015; 25:1043–1055 [View Article] [PubMed]
    [Google Scholar]
  11. Aziz RK, Bartels D, Best AA, DeJongh M, Disz T et al. The RAST Server: rapid annotations using subsystems technology. BMC genomics 2008; 9:75 [View Article] [PubMed]
    [Google Scholar]
  12. Yoon S-H, Ha S-M, Lim J, Kwon S, Chun J. A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie van Leeuwenhoek 2017; 110:1281–1286 [View Article] [PubMed]
    [Google Scholar]
  13. Meier-Kolthoff JP, Auch AF, Klenk HP, Goker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  14. Richter M, Rossello-Mora R. Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 2009; 106:19126–19131 [View Article] [PubMed]
    [Google Scholar]
  15. Moore WEC, Stackebrandt E, Kandler O, Colwell R, Krichevsky MI et al. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463–464 [View Article]
    [Google Scholar]
  16. Dong X, Cai M. Determinative Manual for Routine Bacteriology Beijing: Scientific Press; 2001
    [Google Scholar]
  17. Komagata K, Suzuki K. Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 1987; 19:161–206
    [Google Scholar]
  18. Kates M. Techniques of Lipidology, 2nd. edn Amsterdam: Elsevier; 1986
    [Google Scholar]
  19. Csotonyi JT, Stackebrandt E, Swiderski J, Schumann P, Yurkov V. An alphaproteobacterium capable of both aerobic and anaerobic anoxygenic photosynthesis but incapable of photoautotrophy: Charonomicrobium ambiphototrophicum, gen. nov., sp. nov. Photosynth Res 2011; 107:257–268 [View Article] [PubMed]
    [Google Scholar]
  20. Rathgeber C, Yurkova N, Stackebrandt E, Schumann P, Beatty JT et al. Roseicyclus mahoneyensis gen. nov., sp. nov., an aerobic phototrophic bacterium isolated from a meromictic lake. Int J Syst Evol Microbiol 2005; 55:1597–1603 [View Article] [PubMed]
    [Google Scholar]
  21. Tang L, Zhang Z, Zhou C, Cui R, Tian Y. Roseicyclus marinus sp. nov., isolated from a Synechococcus culture, and emended description of the genus Roseicyclus. Int J Syst Evol Microbiol 2018; 68:1781–1786 [View Article] [PubMed]
    [Google Scholar]
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