1887

Abstract

is a Betaproteobacterial species isolated from ultramafic soils in New Caledonia. The characterization and classification of this species into the genus was done simultaneously with the proposal of the new genus , initially composed of closely related -like species. Thereafter, some reports based on the use of phylogenetic marker genes suggested that forms part of genus. Lacking a formal validation, and with the availability of its genome sequence, a genome-based phylogeny of was obtained to unravel its taxonomic position in . A partial gene phylogeny, extended multilocus sequence typing on homologous protein sequences, and genomic distance-based phylogeny, all support the placement of this species in the genus. Therefore, the reclassification of to comb. nov. is proposed.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.004843
2021-06-24
2024-05-14
Loading full text...

Full text loading...

References

  1. Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H et al. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 1992; 36:1251–1275 [View Article] [PubMed]
    [Google Scholar]
  2. Vinuesa P, Aguilar L, Hirsch AM, Caballero-Mellado J. Phylogenetic analysis of Burkholderia species by multilocus sequence analysis. Curr Microbiol 2013; 67:51–60
    [Google Scholar]
  3. Sawana A, Adeolu M, Gupta RS. Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. Front Genet 2014; 5:429 [View Article]
    [Google Scholar]
  4. Dobritsa AP, Samadpour M. Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia. Int J Syst Evol Microbiol 2016; 66:2836–2846 [View Article] [PubMed]
    [Google Scholar]
  5. Estrada-de los Santos P, Palmer M, Chávez-Ramírez B, Beukes C, Steenkamp E. Whole genome analyses suggests that Burkholderia sensu lato contains two additional novel genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): implications for the evolution of diazotrophy and nodulation in the Burkholderiaceae. Genes (Basel) 2018; 9:389 [View Article]
    [Google Scholar]
  6. Lin QH, Lv Y-Y, Gao Z-H, Qiu L-H. Pararobbsia silviterrae gen. nov., sp. nov., isolated from forest soil and reclassification of Burkholderia alpina as Pararobbsia alpina comb. nov. Int J Syst Evol Microbiol 2020; 70:1412–1420
    [Google Scholar]
  7. Lopes-Santos L, Castro DBA, Ferreira-Tonin M, Corrêa DBA, Weir BS et al. Reassessment of the taxonomic position of Burkholderia andropogonis and description of Robbsia andropogonis gen. nov., comb. nov.. Antonie van Leeuwenhoek 2017; 110:727–736 [View Article] [PubMed]
    [Google Scholar]
  8. Dobritsa AP, Linardopoulou E, Samadpour M. Transfer of 13 species of the genus Burkholderia to the genus Caballeronia and reclassification of Burkholderia jirisanensis as Paraburkholderia jirisanensis comb. nov.. Int J Syst Evol Microbiol 2017; 67:3846–3853 [View Article] [PubMed]
    [Google Scholar]
  9. Dobritsa AP, Samadpour M. Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies. Int J Syst Evol Microbiol 2019; 69:2057–2063 [View Article] [PubMed]
    [Google Scholar]
  10. Guentas L, Gensous S, Cavaloc Y, Ducousso M, Amir H et al. Burkholderia novacaledonica sp. nov. and B. ultramafica sp. nov. isolated from roots of Costularia spp. pioneer plants of ultramafic soils in New Caledonia. Syst Appl Microbiol 2016; 39:151–159 [View Article] [PubMed]
    [Google Scholar]
  11. Gao Z-H, Zhang Q-M, Lv Y-Y, Wang Y-Q, Zhao B-N et al. Paraburkholderia acidiphila sp. nov., Paraburkholderia acidisoli sp. nov. and Burkholderia guangdongensis sp. nov., isolated from forest soil, and reclassification of Burkholderia ultramafica as Paraburkholderia ultramafica comb. nov. Int J Syst Evol Microbiol 2021; 004690:
    [Google Scholar]
  12. Yoon SH, Ha S-M, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: A taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbiol 2017; 67:1613–1617
    [Google Scholar]
  13. Vandamme P, De Brandt E, Houf K, Salles JF, Dirk van Elsas J et al. Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil. Int J Syst Evol Microbiol 2013; 63:4707–4718 [View Article] [PubMed]
    [Google Scholar]
  14. Contreras-Moreira B, Vinuesa P. GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis. Appl Environ Microbiol 2013; 79:7696–7701 [View Article] [PubMed]
    [Google Scholar]
  15. Vinuesa P, Ochoa-Sánchez LE, Contreras-Moreira B. GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision of the genus Stenotrophomonas. Front Microbiol 2018; 9:771 [View Article] [PubMed]
    [Google Scholar]
  16. Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M. Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics 2013; 14:60 [View Article] [PubMed]
    [Google Scholar]
  17. Lefort V, Desper R, Gascuel O. FastME 2.0: A comprehensive, accurate, and fast distance-based phylogeny inference program. Mol Biol Evol 2015; 32:2798–2800 [View Article] [PubMed]
    [Google Scholar]
  18. Chen I-MA, Chu K, Palaniappan K, Ratner A, Huang J et al. The IMG/M Data management and Analysis System v.6.0: New tools and advanced capabilities. Nucleic Acids Res 2021; 49:D751–D763 [View Article] [PubMed]
    [Google Scholar]
  19. Guentas L, Gensous S, Cavaloc Y, Ducousso M, Amir H. Corrigendum to “Burkholderia novacaledonica sp. nov. and B. ultramafica sp. nov. isolated from roots of Costularia spp. pioneer plants of ultramafic soils in New Caledonia” [Syst. Appl. Microbiol. 39 (2016) 151–159]. Syst Appl Microbiol 2019; 42:422 [View Article] [PubMed]
    [Google Scholar]
  20. Kumar S, Stecher G, Tamura K. MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article] [PubMed]
    [Google Scholar]
  21. Nguyen LT, Schmidt HA, Von Haeseler A, Minh BQ. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol 2015; 32:268–274 [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.004843
Loading
/content/journal/ijsem/10.1099/ijsem.0.004843
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error