1887

Abstract

The anaerobic gut fungi (AGF; phylum ) reside in the alimentary tracts of herbivores. Multiple novel, yet-uncultured AGF taxa have recently been identified in culture-independent diversity surveys. Here, we report on the isolation and characterization of the first representative of the RH5 lineage from faecal samples of a wild blackbuck (Indian Antelope, ) from Sutton County, Texas, USA. The isolates displayed medium sized (2–4 mm) compact circular colonies on agar roll tubes and thin loose biofilm-like growth in liquid medium. Microscopic examination revealed monoflagellated zoospores and polycentric thalli with highly branched nucleated filamentous rhizomycelium, a growth pattern encountered in a minority of described AGF genera so far. The obtained isolates are characterized by formation of spherical vesicles at the hyphal tips from which multiple sporangia formed either directly on the spherical vesicles or at the end of sporangiophores. Phylogenetic analysis using the D1/D2 regions of the large ribosomal subunit (D1/D2 LSU) and the ribosomal internal transcribed spacer 1 (ITS1) revealed sequence similarities of 93.5 and 81.3%, respectively, to the closest cultured relatives ( strain D3A (D1/D2 LSU) and strain GFH681 (ITS1). Substrate utilization experiments using the type strain (BB-3) demonstrated growth capabilities on a wide range of mono-, oligo- and polysaccharides, including glucose, xylose, mannose, fructose, cellobiose, sucrose, maltose, trehalose, lactose, cellulose, xylan, starch and raffinose. We propose accommodating these novel isolates in a new genus and species, for which the name gen. nov., sp. nov. is proposed.

Funding
This study was supported by the:
  • National Science Foundation (Award 2029478)
    • Principle Award Recipient: NohaH. Youssef
  • National Science Foundation (Award 2029478)
    • Principle Award Recipient: MostafaS. Elshahed
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.004832
2021-06-23
2024-05-10
Loading full text...

Full text loading...

References

  1. Gruninger RJ, Puniyab AK, Callaghanc TM, Edwardsc JE, Youssef N et al. Anaerobic fungi (phylum Neocallimastigomycota): advances in understanding of their taxonomy, life cycle, ecology, role, and biotechnological potential. FEMS Microbiol Ecol 2014; 90:1–17
    [Google Scholar]
  2. Hess M, Paul SS, Puniya AK, van der Giezen M, Shaw C et al. Anaerobic fungi: past, present, and future. Front Microbiol 2020; 11:584893 [View Article] [PubMed]
    [Google Scholar]
  3. Barr DJ, KudO H, Jakober KD, Cheng KJ. Morphology and development of rumen fungi: Neocallimastix sp., Piromyces communis, and Orpinomyces bovis gen.nov., sp.nov. Can J Bot 1989; 67:2815–2824
    [Google Scholar]
  4. Breton A, Bernalier A, Dusser M, Fonty G, Gaillard-Martinie B et al. Anaeromyces mucronatus nov. gen., nov. sp., a new strictly anaerobic rumen fungus with polycentric thallus. FEMS Microbiol Lett 1990; 70:177–182
    [Google Scholar]
  5. Callaghan TM, Podmirseg SM, Hohlweck D, Edwards JE, Puniya AK et al. Buwchfawromyces eastonii gen. nov., sp. nov.: a new anaerobic fungus (Neocallimastigomycota) isolated from buffalo faeces. Mycokeys 2015; 9:11–28 [View Article]
    [Google Scholar]
  6. Dagar SS, Kumar S, Griffith GW, Edwards JE, Callaghan TM et al. A new anaerobic fungus (Oontomyces anksri gen. nov., sp. nov.) from the digestive tract of the Indian camel (Camelus dromedarius. Fungal Biol 2015; 19:731–737
    [Google Scholar]
  7. Gold JJ, Heath IB, Bauchop T. Ultrastructural description of a new chytrid genus of Caecum anaerobe, Caecomyces equi gen. nov., sp. nov., assigned to the Neocallimasticaceae. BioSystems 1988; 21:403–415 [View Article]
    [Google Scholar]
  8. Hanafy RA, Elshahed MS, Liggenstoffer AS, Griffith GW, Youssef NH. Pecoramyces ruminantium, gen. nov., sp. nov., an anaerobic gut fungus from the feces of cattle and sheep. Mycologia 2017; 109:231–243 [View Article] [PubMed]
    [Google Scholar]
  9. Hanafy RA, Elshahed MS, Youssef NH. Feramyces austinii, gen. nov., sp. nov., an anaerobic gut fungus from rumen and fecal samples of wild Barbary sheep and fallow deer. Mycologia 2018; 110:513–525 [View Article] [PubMed]
    [Google Scholar]
  10. Hanafy RA, Lanjekar VB, Dhakephalkar PK, Callaghan TM, Dagar SS et al. Seven new Neocallimastigomycota genera from fecal samples of wild, zoo-housed, and domesticated herbivores greatly expand the taxonomic diversity of the phylum. Mycologia 2020; 112:1212–1239 [View Article] [PubMed]
    [Google Scholar]
  11. Heath BI, Bauchop T, Skipp RA. Assignment of the rumen anaerobe Neocallimastix frontalis to the Spizellomycetales (Chytridiomycetes) on the basis of its polyflagellate zoospore ultrastructure. Can J Bot 1983; 61:295–307
    [Google Scholar]
  12. Joshi A, Lanjekar V, Dhakephalkar P, Callaghan T, Griffith G et al. Liebetanzomyces polymorphus gen. et sp. nov., a new anaerobic fungus (Neocallimastigomycota) isolated from the rumen of a goat. Mycokeys 2018; 40:89–110 [View Article]
    [Google Scholar]
  13. Ozkose E, Thomas BJ, Davies DR, Griffith GW, Theodorou MK. Cyllamyces aberensis gen.nov. sp.nov., a new anaerobic gut fungus with branched sporangiophores isolated from cattle. Can J Bot 2001; 79:666–673
    [Google Scholar]
  14. Stabel M, Hanafy RA, Schweitzer T, Greif M, Aliyu H et al. Aestipascuomyces dupliciliberans gen. nov, sp. nov., the first cultured representative of the uncultured SK4 clade from aoudad sheep and alpaca. Microorganisms 2020; 8: [View Article] [PubMed]
    [Google Scholar]
  15. Hanafy RA, Johnson B, Youssef NH, Elshahed MS. Assessing anaerobic gut fungal diversity in herbivores using D1/D2 large ribosomal subunit sequencing and multi-year isolation. Environ Microbiol 2020; 22:3883–3908 [View Article] [PubMed]
    [Google Scholar]
  16. Kittelmann S, Naylor GE, Koolaard JP, Janssen PH. A proposed taxonomy of anaerobic fungi (class Neocallimastigomycetes) suitable for large-scale sequence-based community structure analysis. PLOS ONE 2012; 7:e36866e36866 [View Article] [PubMed]
    [Google Scholar]
  17. Liggenstoffer AS, Youssef NH, Couger MB, Elshahed MS. Phylogenetic diversity and community structure of anaerobic fungi (Phylum Neacallymastigales) in ruminant and non-ruminant herbivores. ISME J 2010; 4:1225–1235 [View Article] [PubMed]
    [Google Scholar]
  18. Calkins S, Elledge NC, Hanafy RA, Elshahed MS, Youssef NH. A fast and reliable procedure for spore collection from anaerobic fungi: Application for RNA uptake and long-term storage of isolates. J Microbiol Meth 2016; 127:206–213 [View Article]
    [Google Scholar]
  19. Hungate RE. A roll tube method for cultivation of strict anaerobes. Norris J, Ribbons D. eds In Methods Microbiol Vol 3 Academic Press; pp 117–132
    [Google Scholar]
  20. Wang X, Liu X, Groenewald JZ. Phylogeny of anaerobic fungi (phylum Neocallimastigomycota), with contributions from yak in China. Antonie van Leeuwenhoek 2017; 110:87–103 [View Article] [PubMed]
    [Google Scholar]
  21. Katoh K, Rozewicki J, Yamada KD. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Brief Bioinform 2019; 20:1160–1166 [View Article] [PubMed]
    [Google Scholar]
  22. Ho Y, Barr D. Classification of anaerobic gut fungi from herbivores with emphasis on rumen fungi from Malaysia. Mycologia 1995; 87:655–677 [View Article]
    [Google Scholar]
  23. Chen YC HR, Chien CY. Piromyces polycephalus (Neocallimasticaceae), a new rumen fungus. Nova Hedwigia 2002; 75:409–414
    [Google Scholar]
  24. Barr DJS. Taxonomy and phylogeny of chytrids. Biosystems 1978; 10:153–165 [View Article] [PubMed]
    [Google Scholar]
  25. Youssef NH, Couger MB, Struchtemeyer CG, Liggenstoffer AS, Prade RA et al. Genome of the anaerobic fungus Orpinomyces sp. C1A reveals the unique evolutionary history of a remarkable plant biomass degrader. Appl Environ Microbiol 2013; 79:4620–4634 [View Article] [PubMed]
    [Google Scholar]
  26. Solomon KV, Haitjema CH, Henske JK, Gilmore SP, Borges-Rivera D et al. Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes. Science 2016; 351:1192 [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.004832
Loading
/content/journal/ijsem/10.1099/ijsem.0.004832
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error