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Abstract

A taxonomic study was carried out on strain HN-E21, which was isolated from sponge collected from Yangpu Bay, Hainan, PR China. Cells of strain HN-E21 were Gram-stain-negative, non-spore-forming, tumbling-motile, ovoid- to rod-shaped and pale-yellow-pigmented that could grow at 15–42 °C (optimum, 37 °C), at pH 6–11 (pH 7) and in 0–14 % (w/v) NaCl (2–3 %). This isolate was positive for oxidase and catalase, but negative for hydrolysis of aesculin and gelatin. The phylogenetic tree based on 16S rRNA gene sequences showed that strain HN-E21 formed a clade with BH-SD19, GRP21, M-S13-148, CAU1059 and NH52J within the family . Strain HN-E21 shared the highest similarity to BH-SD19 (95.5 %), followed by 112 (95.3 %), D1-W8 (95.2 %), YM-20 (95.0 %) and H50 (95.0 %). The dominant fatty acids were summed feature 8 (Cω7 and/or Cω6) and C The major polar lipids comprised phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, three unidentified lipids and one unidentified phospholipid. The respiratory quinone was identified as Q-10. The G+C content of the genomic DNA was 66.4 mol%. Based on the phenotypic and phylogenetic data, strain HN-E21 represents a novel species of the genus , for which the name sp. nov. is proposed, with the type strain HN-E21 (=MCCC 1K03333=LMG 30456).

Funding
This study was supported by the:
  • the Scientific Research Project of Xiamen Southern Ocean Center (Award No.17GYY008NF04)
    • Principle Award Recipient: Lianzhong Luo
  • the Young and the Middle-Aged Teacher Education Scientific Research Project of Fujian Province, China (Award No. JT180644)
    • Principle Award Recipient: Lingping Zhuang
  • the Funds for Creative Research Groups of Fujian Colleges and Universities (Award NO. MJK2018-49)
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2020-02-03
2024-05-12
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References

  1. Labrenz M, Collins MD, Lawson PA, Tindall BJ, Schumann P et al. Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 1999; 49:137–147 [View Article]
    [Google Scholar]
  2. Parte AC. LPSN – list of prokaryotic names with standing in Nomenclature (bacterio.net), 20 years on. Int J Syst Evol Microbiol 2018; 68:1825–1829 [View Article]
    [Google Scholar]
  3. Marmur J. A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J Mol Biol 1961; 3:208–IN1 [View Article]
    [Google Scholar]
  4. Yoon SH, SM H, Kwon S, Lim J, Kim Y et al. Introducing EzBioCloud: a taxonomically United database of 16S rRNA gene sequences and whole-genome assemblies. Int J Syst Evol Microbio 2017; 67:1613–1617
    [Google Scholar]
  5. Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol 2016; 33:1870–1874 [View Article]
    [Google Scholar]
  6. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17:368–376 [View Article]
    [Google Scholar]
  7. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4:406–425 [View Article]
    [Google Scholar]
  8. Ludwig W et al. ARB: a software environment for sequence data. Nucleic Acids Res 2004; 32:1363–1371 [View Article]
    [Google Scholar]
  9. Stamatakis A. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 2014; 30:1312–1313 [View Article]
    [Google Scholar]
  10. Wattam AR, Davis JJ, Assaf R, Boisvert S, Brettin T et al. Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center. Nucleic Acids Res 2017; 45:D535–D542 [View Article]
    [Google Scholar]
  11. Skerman VBD. A guide to the identification of the genera of bacteria. Acad Med 1960; 35:92
    [Google Scholar]
  12. Høvik Hansen G, Sørheim R. Improved method for phenotypical characterization of marine bacteria. J Microbiol Methods 1991; 13:231–241 [View Article]
    [Google Scholar]
  13. Smibert RM. Phenotypic characterization. Methods for General and Molecular Bacteriology 1994
    [Google Scholar]
  14. Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids; 1990
  15. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M et al. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 1984; 2:233–241 [View Article]
    [Google Scholar]
  16. Deng S, Jiang F, Chang X, Qu Z, Ren L et al. Roseovarius antarcticus sp. nov., isolated from a decayed whale bone. Int J Syst Evol Microbiol 2015; 65:2326–2333 [View Article]
    [Google Scholar]
  17. Kang H, Kim J-H, Jeon CO, Yoon J-H, Kim W. Roseovarius aquimarinus sp. nov., a slightly halophilic bacterium isolated from seawater. Int J Syst Evol Microbiol 2015; 65:4514–4520 [View Article]
    [Google Scholar]
  18. Wang B, Sun F, Lai Q, Du Y, Liu X et al. Roseovarius nanhaiticus sp. nov., a member of the Roseobacter clade isolated from marine sediment. Int J Syst Evol Microbiol 2010; 60:1289–1295 [View Article]
    [Google Scholar]
  19. Collins MD, Pirouz T, Goodfellow M, Minnikin DE. Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 1977; 100:221–230 [View Article]
    [Google Scholar]
  20. Groth I, Schumann P, Weiss N, Martin K, Rainey FA. Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 1996; 46:234–239 [View Article]
    [Google Scholar]
  21. Park S, Park JM, Lee JS, Yoon JH. Roseovarius ponticola sp. nov., a novel lipolytic bacterium of the family Rhodobacteraceae isolated from seawater. Arch Microbiol 2019; 201:215–222 [View Article]
    [Google Scholar]
  22. Choi EJ, Lee HJ, Kim JM, Jeon CO. Roseovarius lutimaris sp. nov., isolated from a marine tidal flat. Int J Syst Evol Microbiol 2013; 63:3835–3840 [View Article]
    [Google Scholar]
  23. Lu HB, Xue XF, Phurbu D, Xing P, Wu QL. Roseovarius tibetensis sp. nov., a halophilic bacterium isolated from Lake LongmuCo on Tibetan Plateau. J Microbiol 2018; 56:783–789 [View Article]
    [Google Scholar]
  24. Ji X, Zhang C, Zhang X, Xu Z, Ding Y et al. Pelagivirga sediminicola gen. nov., sp. nov. isolated from the Bohai Sea. Int J Syst Evol Microbiol 2018; 68:3494–3499 [View Article]
    [Google Scholar]
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