1887

Abstract

A recent study of a group of like bacteria resulted in the description of 13 novel species of the genus However, our analysis of phylogenetic positions of these species and their molecular signatures (conserved protein sequence indels) showed that they belong to the genus , and we propose to transfer them to this genus. The reclassified species names are proposed as comb. nov., comb. nov., comb. nov., comb. nov., comb. nov., comb. nov., comb. nov., comb. nov., comb. nov., comb. nov., comb. nov., comb. nov. and comb. nov. It is also proposed to reclassify as comb. nov. Based on the results of the polyphasic study, had been described as a member of the A-group of the genus and the most closely related to , and currently classified as belonging to the genus

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.002202
2017-10-01
2019-12-11
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/67/10/3846.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.002202&mimeType=html&fmt=ahah

References

  1. Yabuuchi E, Kosako Y, Oyaizu H, Yano I, Hotta H et al. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiol Immunol 1992;36:1251–1275 [CrossRef][PubMed]
    [Google Scholar]
  2. Caballero-Mellado J, Martínez-Aguilar L, Paredes-Valdez G, Santos PE. Burkholderia unamae sp. nov., an N2-fixing rhizospheric and endophytic species. Int J Syst Evol Microbiol 2004;54:1165–1172 [CrossRef][PubMed]
    [Google Scholar]
  3. Payne GW, Vandamme P, Morgan SH, LiPuma JJ, Coenye T et al. Development of a recA gene-based identification approach for the entire Burkholderia genus. Appl Environ Microbiol 2005;71:3917–3927 [CrossRef][PubMed]
    [Google Scholar]
  4. Spilker T, Baldwin A, Bumford A, Dowson CG, Mahenthiralingam E et al. Expanded multilocus sequence typing for Burkholderia species. J Clin Microbiol 2009;47:2607–2610 [CrossRef][PubMed]
    [Google Scholar]
  5. Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J et al. The genus Burkholderia: analysis of 56 genomic sequences. Genome Dyn 2009;6:140–157 [CrossRef][PubMed]
    [Google Scholar]
  6. Gyaneshwar P, Hirsch AM, Moulin L, Chen WM, Elliott GN et al. Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Mol Plant Microbe Interact 2011;24:1276–1288 [CrossRef][PubMed]
    [Google Scholar]
  7. Estrada-de los Santos P, Vinuesa P, Martínez-Aguilar L, Hirsch AM, Caballero-Mellado J. Phylogenetic analysis of Burkholderia species by multilocus sequence analysis. Curr Microbiol 2013;67:51–60 [CrossRef][PubMed]
    [Google Scholar]
  8. Lemaire B, Van Oevelen S, De Block P, Verstraete B, Smets E et al. Identification of the bacterial endosymbionts in leaf nodules of Pavetta (Rubiaceae). Int J Syst Evol Microbiol 2012;62:202–209 [CrossRef][PubMed]
    [Google Scholar]
  9. Sawana A, Adeolu M, Gupta RS. Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species. Front Genet 2014;5:429 [CrossRef][PubMed]
    [Google Scholar]
  10. Sawana A, Adeolu M, Gupta RS. Paraburkholderia gen. nov. and Paraburkholderia spp. comb. nov. In: Oren A, Garrity GM (editors). List of New Names and New Combinations Previously Effectively, but not Validly, Published, List no. 164, pp. 2019–2021. Int J Syst Evol Microbiol 2015;65;2017–2025
    [Google Scholar]
  11. Sawana A, Adeolu M. Paraburkholderia spp. comb. nov. In: Oren A, Garrity GM (editors). List of New Names and New Combinations Previously Effectively, but not Validly, Published, List no. 165, p. 2779. Int J Syst Evol Microbiol 2015;65:2777–2783[Crossref]
    [Google Scholar]
  12. Dobritsa AP, Samadpour M. Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia. Int J Syst Evol Microbiol 2016;66:2836–2846 [CrossRef][PubMed]
    [Google Scholar]
  13. Coenye T, Laevens S, Willems A, Ohlén M, Hannant W et al. Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples. Int J Syst Evol Microbiol 2001;51:1099–1107 [CrossRef][PubMed]
    [Google Scholar]
  14. Gerrits GP, Klaassen C, Coenye T, Vandamme P, Meis JF. Burkholderia fungorum septicemia. Emerg Infect Dis 2005;11:1115–1117 [CrossRef][PubMed]
    [Google Scholar]
  15. Vandamme P, De Brandt E, Houf K, Salles JF, van Elsas JD et al. Burkholderia humi sp. nov., Burkholderia choica sp. nov., Burkholderia telluris sp. nov., Burkholderia terrestris sp. nov. and Burkholderia udeis sp. nov.: Burkholderia glathei-like bacteria from soil and rhizosphere soil. Int J Syst Evol Microbiol 2013;63:4707–4718 [CrossRef][PubMed]
    [Google Scholar]
  16. Peeters C, Meier-Kolthoff JP, Verheyde B, De Brandt E, Cooper VS et al. Phylogenomic study of Burkholderia glathei-like organisms, proposal of 13 novel Burkholderia species and emended descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae. Front Microbiol 2016;7:877 [CrossRef][PubMed]
    [Google Scholar]
  17. Peeters C, Meier-Kolthoff JP, Verheyde B, de Brandt E, Cooper VS et al. Burkholderia spp. sp. nov. In: Oren A, Garrity GM (editors). List of New Names and New Combinations Previously Effectively, but not Validly, Published, List no. 171, pp. 3761–3762. Int J Syst Evol Microbiol 2016;66:3761 3764[Crossref]
    [Google Scholar]
  18. Arkin AP, Stevens RL, Cottingham RW, Maslov S, Henry CS et al. The DOE systems biology knowledgebase (KBase). bioRxiv 2016;https://doi.org/10.1101/096354 [Accessed on August 30, 2017]
    [Google Scholar]
  19. The US Department of Energy Insert Genomes into Species Tree App. 2016;http://kbase.us/insert-genomes-into-species-tree-app/ [Accessed on April 19, 2017]
  20. Alnajar S, Naushad S, Gupta RS. Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Int J Syst Evol Microbiol 2016;66:5575–5599 [CrossRef][PubMed]
    [Google Scholar]
  21. Farh ME-A, Kim Y-J, Van An H, Sukweenadhi J, Singh P et al. Burkholderia ginsengiterrae sp. nov. and Burkholderia panaciterrae sp. nov., antagonistic bacteria against root rot pathogen Cylindrocarpon destructans, isolated from ginseng soil. Arch Microbiol 2015;197:439–447 [CrossRef][PubMed]
    [Google Scholar]
  22. Dobritsa AP, Kutumbaka KK, Samadpour M. Reclassification of Paraburkholderia panaciterrae (Farh et al. 2015) Dobritsa & Samadpour 2016 as a later synonym of Paraburkholderia ginsengiterrae (Farh et al. 2015) Dobritsa & Samadpour 2016. Int J Syst Evol Microbiol 2016;66:4085–4087 [CrossRef][PubMed]
    [Google Scholar]
  23. Kim S, Gong G, Woo HM, Kim Y, Um Y. Burkholderia jirisanensis sp. nov. isolated from forest soil. Int J Syst Evol Microbiol 2016;66:1260–1267 [CrossRef][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.002202
Loading
/content/journal/ijsem/10.1099/ijsem.0.002202
Loading

Data & Media loading...

Supplements

Supplementary File 1

PDF

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error