1887

Abstract

Five strains (CCY 058-007-001, CCY 058-007-002, CCY 058-007-003, CCY 058-007-004 and CCY 058-007-005) of a novel parasitic yeast belonging to the genus Taphrina were isolated from leaf tissues of Geum montanum L. (Rosaceae), collected from the Vysoké Tatry Mountains, Slovakia. Genetic analyses revealed that these isolates differ by 15 unique substitutions in the ITS region and by six substitutions in the rns gene from all other species of the genus Taphrina analysed hitherto. The novel strains are also distinguished from all other species of the genus Taphrina by their morphology, biochemical properties and ecology. These strains represent a novel species, for which the name Taphrina gei-montani sp. nov. is proposed. The type strain is CCY 058-007-001(=CBS 14159=BU001). The MycoBank number is MB815677. The present study also demonstrates that two distinct species of the genus Taphrina parasitize the herbaceous Rosaceae: Taphrina gei-montani sp. nov. on Geum montanum and Taphrina tormentillae on Potentilla species.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijsem.0.001095
2016-07-01
2019-10-16
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/66/7/2540.html?itemId=/content/journal/ijsem/10.1099/ijsem.0.001095&mimeType=html&fmt=ahah

References

  1. Babjeva I. , Reshetova I. . ( 1998;). Yeast resources in natural habitats at Polar Circle Latitude. . Food Technol Biotechnol 36: 1–5.
    [Google Scholar]
  2. Bacigálová K. . ( 1992;). Taphrina potentillae on Parageum montanum – a new species in Slovakia. . Česká Mykol 46: 138–142.
    [Google Scholar]
  3. Bacigálová K. , Lopandic K. , Rodrigues M. G. , Fonseca A. , Herzberg M. , Pinsker W. , Prillinger H. . ( 2003;). Phenotypic and genotypic identification and phylogenetic characterisation of Taphrina fungi on alder. . Mycol Prog 2: 179–196. [CrossRef]
    [Google Scholar]
  4. Bacigálová K. . ( 2010;). Flóra Slovenska X/2. Bratislava:: VEDA;.
    [Google Scholar]
  5. Bacigálová K. , Petrýdesová J. , Mułenko W. , Kozłowska M. . ( 2014;). Taphrina potentillae (Farl.) Johans. on Parageum montanum (L.) Hara – a new species in Slovakia. . Biologia 69: 163–167.[CrossRef]
    [Google Scholar]
  6. Castresana J. . ( 2000;). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. . Mol Biol Evol 17: 540–552. [CrossRef] [PubMed]
    [Google Scholar]
  7. Cordier T. , Robin C. , Capdevielle X. , Desprez-Loustau M.-L. , Vacher C. . ( 2012;). Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica). . Fun Ecol 5: 509–520. [CrossRef]
    [Google Scholar]
  8. Euro+Med ( 2006;). Euro+Med PlantBase-the information resource for Euro-Mediterranean plant diversity. . Published on the Internet http://ww2.bgbm.org/EuroPlusMed/. Accessed on 24 November 2015.
  9. Farlow W. G. . ( 1883;). Notes on some species in the third and eleventh centuries of Ellise’s North American Fungi. . Proc Am Acad Arts Sci 18: 84.
    [Google Scholar]
  10. Fonseca A. , Rodrigues M. G. . ( 2011;). Taphrina Fries (1832). . In The Yeasts - a Taxonomic Study, , 5th edn., pp. 823–858. Edited by Kurtzman C. P. , Fell J. W. , Boekhout T. . London:: Elsevier;.[CrossRef]
    [Google Scholar]
  11. Fonseca Á. , Inácio J. . ( 2011;). Lalaria R.T. Moore emend. Á Fonseca (2004). . In The Yeasts - Taxonomic Study, , 5th edn., pp. 1291–1298. Edited by Kurtzman C. P. , Fell J. W. , Boekhout T. . London:: Elsevier;.[CrossRef]
    [Google Scholar]
  12. Gjaerum H. B. . ( 1964;). The genus Taphrina Fr. in Norway. . Nytt Mag Bot 11: 5–26.
    [Google Scholar]
  13. Guindon S. , Gascuel O. . ( 2003;). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. . Syst Biol 52: 696–704. [CrossRef] [PubMed]
    [Google Scholar]
  14. Hall T. A. . ( 1999;). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. . Nucleic Acids Symp Ser (Oxford) 41: 95–98.
    [Google Scholar]
  15. Huson D. H. , Bryant D. . ( 2006;). Application of phylogenetic networks in evolutionary studies. . Mol Biol Evol 23: 254–267. [CrossRef] [PubMed]
    [Google Scholar]
  16. Inácio J. , Rodrigues M. G. , Sobral P. , Fonseca A. . ( 2004;). Characterisation and classification of phylloplane yeasts from Portugal related to the genus Taphrina and description of five novel Lalaria species. . FEMS Yeast Res 4: 541–555. [CrossRef] [PubMed]
    [Google Scholar]
  17. James T. Y. , Kauff F. , Schoch C. L. , Matheny P. B. , Hofstetter V. , Cox C. J. , Celio G. , Gueidan C. , Fraker E. et al. ( 2006;). Reconstructing the early evolution of Fungi using a six-gene phylogeny. . Nature 443: 818–822. [CrossRef] [PubMed]
    [Google Scholar]
  18. Johanson C. J. . ( 1885;). Om svampslägtet Taphrina och dithörande svenska arter. . Öfvers K Vetensk Akad Förh 1: 29–47.
    [Google Scholar]
  19. Jumpponen A. , Jones K. L. . ( 2009;). Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. . New Phytol 184: 438–448. [CrossRef] [PubMed]
    [Google Scholar]
  20. Jumpponen A. , Jones K. L. . ( 2010;). Seasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environments. . New Phytol 186: 496–513. [CrossRef] [PubMed]
    [Google Scholar]
  21. Kurtzman C. P. . ( 2010;). Description of new yeast species – is one strain enough?. The Bull BISMiS 1: 17–24.
    [Google Scholar]
  22. Kurtzman C. P. , Fell J. W. , Boekhout T. . ( 2011a;). Gene sequence analyses and other DNA-based methods for yeast species recognition. . In The Yeasts – A Taxonomic Study, , 5th edn., pp. 137–144. Edited by Kurtzman C. P. , Fell J. W. , Boekhout T. . London:: Elsevier;.[CrossRef]
    [Google Scholar]
  23. Kurtzman C. P. , Fell J. W. , Boekhout T. , Robert V. . ( 2011b;). Methods for isolation, phenotypic characterization and maintenance of yeasts. . In The Yeasts – A Taxonomic Study, , 5th edn. , pp. 87–110. Edited by Kurtzman C. P. , Fell J. W. , Boekhout T. . London:: Elsevier;.[CrossRef]
    [Google Scholar]
  24. Maksimova I. A. , Chernov I. Y. . ( 2004;). Community structure of yeast fungi in forest Biogeocenoses. . Microbiology 73: 474–481. [CrossRef]
    [Google Scholar]
  25. McNeill J. , Barrie F. R. , Buck W. R. , Demoulin V. , Greuter W. , Hawksworth D. L. , Herendeen P. S. , Knapp S. , Marhold K. et al. ( 2012;). International code of Nomenclature for algae, fungi, and plants (Melbourne Code), adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. . Comps Regnum Veg 154: 1–208.
    [Google Scholar]
  26. Miller M. A. , Pfeiffer W. , Schwartz T. . ( 2010;). Creating the CIPRES Science Gateway for inference of large phylogenetic trees. . In Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, pp. 1–8, New Orleans, LA:.
    [Google Scholar]
  27. Mix A. J. . ( 1949;). A monograph of the genus Taphrina . . Univ Kans Sci Bull 33: 3–167. [CrossRef]
    [Google Scholar]
  28. Mix A. J. . ( 1954;). Additions and emendations to a monograph of the genus Taphrina . . Trans Kansas Acad Sci 57: 55–65. [CrossRef]
    [Google Scholar]
  29. Nishida H. , Sugiyama J. . ( 1994;). Archiascomycetes: detection of a major new lineage within the Ascomycota. . Mycoscience 35: 361–366. [CrossRef]
    [Google Scholar]
  30. Oberkofler I. , Peintner U. . ( 2008;). Detection of soil fungal communities in an alpine primary successional habitat: does pooling of DNA extracts affect investigations?. Annals Microbiol 58: 585–595. [CrossRef]
    [Google Scholar]
  31. Petrydesová J. , Bacigálová K. , Sulo P. . ( 2013;). The reassignment of three 'lost' Taphrina species (Taphrina bullata, Taphrina insititiae and Taphrina rhizophora) supported by the divergence of nuclear and mitochondrial DNA. . Int J Syst Evol Microbiol 63: 3091–3098. [CrossRef] [PubMed]
    [Google Scholar]
  32. Posada D. . ( 2008;). jModelTest: phylogenetic model averaging. . Mol Biol Evol 25: 1253–1256. [CrossRef] [PubMed]
    [Google Scholar]
  33. Prillinger H. , Bacigálová K. , Lopandic K. , Binder M. . ( 2000;). Taphrina padi in Bayern und der Slowakei. . Hoppea 61: 275–294.
    [Google Scholar]
  34. Rodrigues M. G. , Fonseca A. . ( 2003;). Molecular systematics of the dimorphic ascomycete genus Taphrina . . Int J Syst Evol Microbiol 53: 607–616. [CrossRef] [PubMed]
    [Google Scholar]
  35. Ronquist F. , Huelsenbeck J. P. . ( 2003;). MrBayes 3: Bayesian phylogenetic inference under mixed models. . Bioinformatics 19: 1572–1574. [CrossRef] [PubMed]
    [Google Scholar]
  36. Rostrup E. . ( 1885;). Om nogle af snyltesvampe foraarsagede misdannelser hos blomsterplanter. . Bot Tidsskr 14: 230–243.
    [Google Scholar]
  37. Sadebeck R. . ( 1893;). Die parasitischen Exoascaceen. Eine Monographie. . Jahrb Hamburg Wiss Anst Beih 10: 1–108.
    [Google Scholar]
  38. Sałata B. . ( 1974;). Flora Polska, Grzyby. Tom VI. Szpetkowe-Taphrinales. Warszawa. Kraków:: Panstwowe Wydawnictwo Naukowe;.
    [Google Scholar]
  39. Schäfer A. M. . ( 2010;). Penetration and Development of the Plant Parasitic Fungal Genus Microbotryum (Pucciniomycotina) on Various Host Plants. Dissertation Study. Germany:: International Graduate School of Biosciences, Ruhr-University Bochum;.
    [Google Scholar]
  40. Selbmann L. , Turchetti B. , Yurkov A. , Cecchini C. , Zucconi L. , Isola D. , Buzzini P. , Onofri S. . ( 2014;). Description of Taphrina antarctica f.a. sp. nov., a new anamorphic ascomycetous yeast species associated with Antarctic endolithic microbial communities and transfer of four Lalaria species in the genus Taphrina . . Extremophiles 18: 707–721. [CrossRef] [PubMed]
    [Google Scholar]
  41. Sugiyama J. . ( 1998;). Relatedness, phylogeny, and revolution of the fungi. . Mycoscience 39: 487–511. [CrossRef]
    [Google Scholar]
  42. Sugiyama J. , Hosaka K. , Suh S. O. . ( 2006;). Early diverging Ascomycota: phylogenetic divergence and related evolutionary enigmas. . Mycologia 98: 996–1005. [CrossRef] [PubMed]
    [Google Scholar]
  43. Swofford D. L. . ( 2001;). PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), v. 4.0 Beta 10. Sunderland:: Sinauer Associates;.
    [Google Scholar]
  44. Webb J. S. , Nixon M. , Eastwood I. M. , Greenhalgh M. , Robson G. D. , Handley P. S. . ( 2000;). Fungal colonization and biodeterioration of plasticized polyvinyl chloride. . Appl Environ Microbiol 66: 3194–3200. [CrossRef] [PubMed]
    [Google Scholar]
  45. White T. J. , Bruns T. D. , Lee S. B. , Taylor J. W. . ( 1990;). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. . In PCR Protocols: A Guide to Methods and Applications , pp. 315–322. Edited by Innis M. A. , Gelfand D. H. , Sninsky J. J. , White T. J. . New York:: Academic. Press;.
    [Google Scholar]
  46. Wuczkowski M. , Metzger E. , Sterflinger K. , Prillinger H. . ( 2005;). Diversity of yeasts isolated from litter and soil of different natural forest sites in Austria. . Aust J Agric Res 56: 201–208.
    [Google Scholar]
  47. Wägele J. W. , Mayer C. . ( 2007;). Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects. . BMC Evol Biol 7: 147. [CrossRef] [PubMed]
    [Google Scholar]
  48. Wägele J.-W. , Rödding F. . ( 1998;). Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects. . Mol Phylogen Evol 9: 358–365.[CrossRef]
    [Google Scholar]
  49. Yurkov A. M. , Chernov I. Y. , Tiunov A. V. . ( 2008;). Influence of Lumbricus terrestris earthworms on the structure of the yeast community of forest litter. . Microbiology 77: 107–111. [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijsem.0.001095
Loading
/content/journal/ijsem/10.1099/ijsem.0.001095
Loading

Data & Media loading...

Supplements

Supplementary File 1



PDF

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error