1887

Abstract

A novel aerobic, heterotrophic, prosthecate bacterium, designated 26III/A02/215, was isolated from surface water of the north-western Mediterranean Sea. Cells stained Gram-negative and were straight to slightly curved rods, forming red colonies on agar plates. The strain grew at 15–37 °C inclusive (optimum 30 °C) and grew optimally at seawater salinity. Growth was observed on organic acids, amino acids and complex organic substrates. The fatty acids (>5 %) detected in strain 26III/A02/215 were C 6, C 7 and C. The lipid pattern indicated the presence of phosphatidylglycerol, glucuronopyranosyldiglyceride, monoglycosyldiglyceride, an unidentified glycolipid and three unidentified phospholipids. Phosphatidylethanolamine and diphosphatidylglycerol were absent. Ubiquinone Q-10 was the only respiratory lipoquinone. The G+C content of the genomic DNA was 46.8 mol%. Comparative 16S rRNA gene sequence analysis indicated that strain 26III/A02/215 belonged to the branch of the order . This affiliation was consistent with the results of polar lipid analyses. Among this group, the novel isolate was most closely related to (93.9 % 16S rRNA gene sequence similarity to the type strain). On the basis of genotypic, chemotaxonomic and phenotypic distinctness, we propose a novel genus, gen. nov., with sp. nov. as the type species. The type strain of is 26III/A02/215 (=DSM 19091 =CIP 109500 =OOB 269).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.65424-0
2008-11-01
2024-04-26
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/58/11/2511.html?itemId=/content/journal/ijsem/10.1099/ijs.0.65424-0&mimeType=html&fmt=ahah

References

  1. Abraham, W.-R., Meyer, H., Lindholst, S., Vancanneyt, M. & Smit, J.(1997). Phospho- and sulfolipids as biomarkers of Caulobactersensu lato, Brevundimonas and Hyphomonas. Syst Appl Microbiol 20, 522–539.[CrossRef] [Google Scholar]
  2. Abraham, W.-R., Strömpl, C., Meyer, H., Lindholst, S., Moore, E. R. B., Christ, R., Vancanneyt, M., Tindall, B.-J., Bennasar, A. & other authors(1999). Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. Int J Syst Bacteriol 49, 1053–1073.[CrossRef] [Google Scholar]
  3. Abraham, W.-R., Strömpl, C., Bennasar, A., Vancanneyt, M., Snauwaert, C., Swings, J., Smit, J. & Moore, E. R. B.(2002). Phylogeny of Maricaulis Abraham et al. 1999 and proposal of Maricaulis virginensis sp. nov., M. parjimensis sp. nov., M. washingtonensis sp. nov. and M. salignorans sp. nov. Int J Syst Evol Microbiol 52, 2191–2201.[CrossRef] [Google Scholar]
  4. Abraham, W.-R., Strömpl, C., Vancanneyt, M., Bennasar, A., Swings, J., Lünsdorf, H., Smit, J. & Moore, E. R. B.(2004).Woodsholea maritima gen. nov., sp. nov., a marine bacterium with a low diversity of polar lipids. Int J Syst Evol Microbiol 54, 1227–1234.[CrossRef] [Google Scholar]
  5. Agogué, H., Casamayor, E. O., Bourrain, M., Obernosterer, I., Joux, F., Herndl, G. J. & Lebaron, P.(2005). A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microbiol Ecol 54, 269–280.[CrossRef] [Google Scholar]
  6. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J.(1990). Basic local alignment search tool. J Mol Biol 215, 403–410.[CrossRef] [Google Scholar]
  7. Anast, N. & Smit, J.(1988). Isolation and characterization of marine caulobacters and assessment of their potential for generic experimentation. Appl Environ Microbiol 54, 809–817. [Google Scholar]
  8. Badger, J. H., Eisen, J. A. & Ward, N. L.(2005). Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic analysis: implications for the taxonomy of the orders ‘Rhodobacterales’ and Caulobacterales. Int J Syst Evol Microbiol 55, 1021–1026.[CrossRef] [Google Scholar]
  9. Badger, J. H., Hoover, T. R., Brun, Y. V., Weiner, R. M., Laub, M. T., Alexandre, G., Mrázek, J., Ren, Q., Paulsen, I. T. & other authors(2006). Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus. J Bacteriol 188, 6841–6850.[CrossRef] [Google Scholar]
  10. Biebl, H., Allgaier, M., Tindall, B. J., Koblizek, M., Lünsdorf, H., Pukall, R. & Wagner-Döbler, I.(2005a).Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates. Int J Syst Evol Microbiol 55, 1089–1096.[CrossRef] [Google Scholar]
  11. Biebl, H., Allgaier, M., Lünsdorf, H., Pukall, R., Tindall, B. J. & Wagner-Döbler, I.(2005b).Roseovarius mucosus sp. nov., a member of the Roseobacter clade with trace amounts of bacteriochlorophyll a. Int J Syst Evol Microbiol 55, 2377–2383.[CrossRef] [Google Scholar]
  12. Biebl, H., Tindall, B. J., Pukall, R., Lünsdorf, H., Allgaier, M. & Wagner-Döbler, I.(2006).Hoeflea phototrophica sp. nov., a novel marine aerobic alphaproteobacterium that forms bacteriochlorophyll a. Int J Syst Evol Microbiol 56, 821–826.[CrossRef] [Google Scholar]
  13. Biebl, H., Pukall, R., Lünsdorf, H., Schulz, S., Allgaier, M., Tindall, B. J. & Wagner-Döbler, I.(2007). Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina comb. nov. and of Stappia alba as Labrenzia alba comb. nov., and emended descriptions of the genera Pannonibacter, Stappia and Roseibium, and of the species Roseibium denhamense and Roseibium hamelinense. Int J Syst Evol Microbiol 57, 1095–1107.[CrossRef] [Google Scholar]
  14. Felsenstein, J.(1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef] [Google Scholar]
  15. Felsenstein, J.(1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef] [Google Scholar]
  16. Galtier, N., Gouy, M. & Gautier, C.(1996).seaview and phylo_win: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543–548. [Google Scholar]
  17. Garrity, G. M. & Holt, J. G.(2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119–166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
  18. Garrity, G. M., Bell, J. A. & Lilburn, T.(2005a). Class I. Alphaproteobacteria class. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, p. 1. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
  19. Garrity, G. M., Bell, J. A. & Lilburn, T.(2005b). Order III. Rhodobacterales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, p. 161. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
  20. Garrity, G. M., Bell, J. A. & Lilburn, T.(2006).Rhodobacteraceae fam. nov. In List of New Names and New Combinations Previously Effectively, but not Validly, Published, Validation List no. 107. Int J Syst Evol Microbiol 56, 1–6.[CrossRef] [Google Scholar]
  21. Gieszczykiewicz, M.(1939). Zagadnienie systematihki w bakteriologii – Zur Frage der Bakterien-Systematic. Bull Acad Pol Sci Ser Sci Biol 1, 9–27 (in Polish with German abstract). [Google Scholar]
  22. Henrici, A. T. & Johnson, D.(1935). Stalked bacteria, a new order of schizomycetes. J Bacteriol 29, 3–4. [Google Scholar]
  23. Kämpfer, P. & Kroppenstedt, R. M.(1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989–1005.[CrossRef] [Google Scholar]
  24. Kuykendall, L. D.(2005). Order VI. Rhizobiales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, p. 324. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
  25. Kwon, K. K., Lee, H.-S., Yang, S. H. & Kim, S.-J.(2005).Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage (Kordiimonadales ord. nov.) in the Alphaproteobacteria. Int J Syst Evol Microbiol 55, 2033–2037.[CrossRef] [Google Scholar]
  26. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Schumann, P. & Hirsch, P.(1999).Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake (Antarctica). Int J Syst Bacteriol 49, 137–147.[CrossRef] [Google Scholar]
  27. Labrenz, M., Tindall, B. J., Lawson, P. A., Collins, M. D., Schumann, P. & Hirsch, P.(2000).Staleya guttiformis gen. nov., sp. nov. and Sulfitobacter brevis sp. nov., α-3-Proteobacteria from hypersaline, heliothermal and meromictic antarctic Ekho Lake. Int J Syst Evol Microbiol 50, 303–313.[CrossRef] [Google Scholar]
  28. Lee, K.-B., Liu, C.-T., Anzai, Y., Kim, H., Aono, T. & Oyaizu, H.(2005). The hierarchical system of the Alphaproteobacteria: description of Hyphomonadaceae fam. nov., Xanthobacteraceae fam. nov. and Erythrobacteraceae fam. nov. Int J Syst Evol Microbiol 55, 1907–1919.[CrossRef] [Google Scholar]
  29. Lee, K., Lee, H.-K., Choi, T.-H. & Cho, J.-C.(2007).Robiginitomaculum antarcticum gen. nov., sp. nov., a member of the family Hyphomonadaceae, from Antarctic seawater. Int J Syst Evol Microbiol 57, 2595–2599.[CrossRef] [Google Scholar]
  30. Marie, D., Simon, N., Guillou, L., Partensky, F. & Vaulot, D.(2000). Flow cytometry analysis of marine picoplankton. In Living Color: Protocols in Flow Cytometry and Cell Sorting. Edited by R. A. Diamond & S. DeMaggio, pp. 421–454. Berlin & Heidelberg: Springer.
  31. Martens, T., Heidorn, T., Pukall, R., Simon, M., Tindall, B. J. & Brinkhoff, T(2006). Reclassification of Roseobacter gallaeciensis Ruiz-Ponte et al. 1998 as Phaeobacter gallaeciensis gen. nov., comb. nov., description of Phaeobacter inhibens sp. nov., reclassification of Ruegeria algicola (Lafay et al. 1995) Uchino et al. 1999 as Marinovum algicola gen. nov., comb. nov., and emended descriptions of the genera Roseobacter, Ruegeria and Leisingeria. Int J Syst Evol Microbiol 56, 1293–1304.[CrossRef] [Google Scholar]
  32. Mesbah, M., Premachandran, U. & Whitman, W. B.(1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef] [Google Scholar]
  33. MIDI(2001).Sherlock Microbial Identification System. Newark, DE: MIDI Inc.
  34. Moore, R. L., Weiner, R. M. & Gebers, R.(1984). Genus Hyphomonas Pongratz 1957 nom. rev. emend., Hyphomonas polymorpha Pongratz 1957 nom. rev. emend., and Hyphomonas neptunium (Leifson 1964) comb. nov. emend. (Hyphomicrobium neptunium). Int J Syst Bacteriol 34, 71–73.[CrossRef] [Google Scholar]
  35. Murray, R. G. E., Brenner, D. J., Colwell, R. R., De Vos, P., Goodfellow, M., Grimont, P. A. D., Pfennig, N., Stackebrandt, E. & Zavarzin, G. A.(1990). Report of the ad hoc committee on approaches to taxonomy within the proteobacteria. Int J Syst Bacteriol 40, 213–215.[CrossRef] [Google Scholar]
  36. Pfenning, N. & Trüper, H. G.(1971). Higher taxa of the phototrophic bacteria. Int J Syst Bacteriol 21, 17–18.[CrossRef] [Google Scholar]
  37. Poindexter, J. S.(1981). The caulobacters: ubiquitous unusual bacteria. Microbiol Rev 45, 123–179. [Google Scholar]
  38. Raguénès, G., Christen, R., Guézennec, J., Pignet, P. & Barbier, G.(1997).Vibrio diabolicus sp. nov., a new polysaccharide-secreting organism isolated from a deep-sea hydrothermal vent polychaete annelid, Alvinella pompejana. Int J Syst Bacteriol 47, 989–995.[CrossRef] [Google Scholar]
  39. Rosselló-Mora, R. & Amann, R.(2001). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39–67.[CrossRef] [Google Scholar]
  40. Saitou, N. & Nei, M.(1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425. [Google Scholar]
  41. Schlesner, H., Bartels, C., Sittig, M., Dorsch, M. & Stackebrandt, E.(1990). Taxonomic and phylogenetic studies on a new taxon of budding hyphal Proteobacteria, Hirschia baltica gen. nov., sp. nov. Int J Syst Bacteriol 40, 443–451.[CrossRef] [Google Scholar]
  42. Sittig, M. & Hirsch, P.(1992). Chemotaxonomic investigation of budding and/or hyphal bacteria. Syst Appl Microbiol 15, 209–222.[CrossRef] [Google Scholar]
  43. Smibert, R. M. & Krieg, N. R.(1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
  44. Strömpl, C., Hold, G. L., Lünsdorf, H., Graham, J., Gallacher, S., Abraham, W.-R., Moore, E. R. B. & Timmis, K. N.(2003).Oceanicaulis alexandrii gen. nov., sp. nov., a novel stalked bacterium isolated from a culture of the dinoflagellate Alexandrium tamarense (Lebour) Balech. Int J Syst Evol Microbiol 53, 1901–1906.[CrossRef] [Google Scholar]
  45. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  46. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors(1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463–464.[CrossRef] [Google Scholar]
  47. Weiner, R. M., Devine, R. A., Powell, D. M., Dagasan, L. & Moore, R. L.(1985).Hyphomonas oceanitis sp. nov., Hyphomonas hirschiana sp. nov., and Hyphomonas jannaschiana sp. nov. Int J Syst Bacteriol 35, 237–243.[CrossRef] [Google Scholar]
  48. Weiner, R. M., Melick, M., O'Neill, K. & Quintero, E.(2000).Hyphomonas adhaerens sp. nov., Hyphomonas johnsonii sp. nov. and Hyphomonas rosenbergii sp. nov., marine budding and prosthecate bacteria. Int J Syst Evol Microbiol 50, 459–469.[CrossRef] [Google Scholar]
  49. Widdel, F., Boetius, A. & Rabus, R.(2006). Anaerobic biodegradation of hydrocarbons including methane. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 2, pp. 1028–1049. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
  50. Yabuuchi, E. & Kosako, Y.(2005). Order IV. Sphingomonadales ord. nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, part C, pp. 230–233. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.65424-0
Loading
/content/journal/ijsem/10.1099/ijs.0.65424-0
Loading

Data & Media loading...

Supplements

vol. , part 11, pp. 2511 - 2519

Effect of temperature on the maximum growth rate of strain 26III/A02/215 . [PDF](14 KB)



PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error