Rhodococcus imtechensis sp. nov., a nitrophenol-degrading actinomycete

References

1. Altschul S. F., Madden T. L., Schaffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
   [Google Scholar]
2. Briglia M., Rainey F. A., Stackebrandt E., Schraa G., Salkinoja-Salonen M. S. 1996; Rhodococcus percolatus sp. nov., a bacterium degrading 2,4,6-trichlorophenol. Int J Syst Bacteriol 46:23–30 [CrossRef]
   [Google Scholar]
3. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F. 1978; Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . Proc Natl Acad Sci U S A 75:4801–4805 [CrossRef]
   [Google Scholar]
4. Cowan S. T., Steel K. J. 1965 Manual for the Identification of Medical Bacteria London: Cambridge University Press;
   [Google Scholar]
5. Felsenstein J. 1985; Confidence limits on phylogenetics: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
   [Google Scholar]
6. Finnerty W. R. 1992; The biology and genetics of the genus Rhodococcus . Annu Rev Microbiol 46:193–218 [CrossRef]
   [Google Scholar]
7. Goodfellow M. 1986; Genus Rhodococcus Zopf 1891, 28^AL. In Bergey's Manual of Systematic Bacteriology . vol 2 pp  1472–1481 Edited by Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. Baltimore: Williams & Wilkins;
8. Goodfellow M., Alderson G., Chun J. 1998; Rhodococcal systematics: problems and developments. Antonie van Leeuwenhoek 74:3–20 [CrossRef]
   [Google Scholar]
9. Goodfellow M., Isik F., Yates E. 1999; Actinomycete systematics: an unfinished synthesis. Nova Acta Leopold NF80:31247–82
   [Google Scholar]
10. Goodfellow M., Chun J., Stackebrandt E., Kroppenstedt R. M. 2002; Transfer of Tsukamurella wratislaviensis Goodfellow et al . 1995 to the genus Rhodococcus as Rhodococcus wratislaviensis comb. nov. Int J Syst Evol Microbiol 52:749–755 [CrossRef]
    [Google Scholar]
11. Gordon R. E., Barnett D. A., Handerhan J. E., Pang C. H.-N. 1974; Nocardia coeliaca , Nocardia autotrophica , and the nocardin strain. Int J Syst Bacteriol 24:54–63 [CrossRef]
    [Google Scholar]
12. Johnson J. L. 1994; Similarity analysis of rRNAs. In Methods for General and Molecular Bacteriology . pp  683–700 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
13. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism vol  3 pp  21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
14. Klatte S., Kroppenstedt R. M., Rainey F. A. 1994; Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus -species. Syst Appl Microbiol 17:355–360 [CrossRef]
    [Google Scholar]
15. Kroppenstedt R. M. 1982; Separation of bacterial menaquinones by HPLC using reverse phase (RP 18) and a silver loaded ion exchanger as stationary phases. J Liq Chromatogr 5:2359–2387 [CrossRef]
    [Google Scholar]
16. Lanyi B. 1987; Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1–67
    [Google Scholar]
17. Mandel M., Marmur J. 1968; Use of ultraviolet absorbance–temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B:195–206
    [Google Scholar]
18. Minnikin D. E., Alshamaony L., Goodfellow M. 1975; Differentiation of Mycobacterium , Nocardia , and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88:200–204 [CrossRef]
    [Google Scholar]
19. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. 1984; An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241 [CrossRef]
    [Google Scholar]
20. Pandey K. K., Mayilraj S., Chakraborti T. 2002; Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 52:1559–1567 [CrossRef]
    [Google Scholar]
21. Prakash D., Chauhan A., Jain R. K. 1996; Plasmid-encoded degradation of p -nitrophenol by Pseudomonas cepacia . Biochem Biophys Res Commun 224:375–381 [CrossRef]
    [Google Scholar]
22. Richard A. W., Wilson A. J. 1993 Procedures in Electron Microscopy New York: Wiley;
    [Google Scholar]
23. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
24. Sambrook J., Russell D. W. 2001 Molecular Cloning: a Laboratory Manual , 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
25. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [CrossRef]
    [Google Scholar]
26. Shivaji S., Ray M. K., Saisree L., Jagannadham M. V., Seshu Kumar G., Reddy G. S. N., Bhargava P. M. 1992; Sphingobacterium antarcticus sp. nov., a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. Int J Syst Bacteriol 42:102–116 [CrossRef]
    [Google Scholar]
27. Skerman V. B. D. 1967 A Guide to the Identification of the Genera of Bacteria , 2nd edn. Baltimore: Williams & Wilkins;
    [Google Scholar]
28. Smibert R. M., Krieg N. R. 1994; Phenotypic characterization. In Methods for General and Molecular Bacteriology pp  607–654 Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
    [Google Scholar]
29. Staneck J. L., Roberts G. D. 1974; Simplified approach to identification of aerobic actinomycetes by thin layer chromatography. Appl Microbiol 28:226–231
    [Google Scholar]
30. Takeuchi M., Hatano K. 1998; Gordonia rhizosphera sp. nov. isolated from the mangrove rhizosphere. Int J Syst Bacteriol 48:907–912 [CrossRef]
    [Google Scholar]
31. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
32. Tourova T. P., Antonov A. S. 1987; Identification of microorganisms by rapid DNA-DNA hybridization. Methods Microbiol 19:333–355
    [Google Scholar]
33. Warhurst A. M., Fewson C. A. 1994; Biotransformations catalyzed by the genus Rhodococcus . Crit Rev Biotechnol 14:29–73 [CrossRef]
    [Google Scholar]
34. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
35. Williams S. T., Goodfellow M., Alderson G., Wellington E. M. H., Sneath P. H. A., Sackin M. J. 1983; Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1743–1813
    [Google Scholar]
36. Yassin A. F. 2005; Rhodococcus triatomae sp. nov., isolated from a blood-sucking bug. Int J Syst Evol Microbiol 55:1575–1579 [CrossRef]
    [Google Scholar]
37. Yoon J.-H., Cho Y.-G., Kang S.-S., Kim S. B., Lee S. T., Park Y.-H. 2000; Rhodococcus koreensis sp. nov., a 2,4-dinitrophenol-degrading bacterium. Int J Syst Evol Microbiol 50:1193–1201 [CrossRef]
    [Google Scholar]