1887

Abstract

Although the type species of the genus , , was transferred to , was not transferred. Therefore, should be reclassified. Based on 16S rRNA gene sequence analysis and re-examination of physiological properties of the type strain, X6B (=DSM 7040=ATCC BAA-1149), we propose that should be reclassified as comb. nov. Strain X6B contains two separate 16S rRNA genes bracketing another species in the phylogenetic 16S rRNA gene-based tree.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.63723-0
2006-06-01
2024-12-03
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/56/6/1391.html?itemId=/content/journal/ijsem/10.1099/ijs.0.63723-0&mimeType=html&fmt=ahah

References

  1. Amann G., Stetter K. O., Llobet-Brossa E., Amann R., Anton J. 2000; Direct proof for the presence and expression of two 5 % different 16S rRNA genes in individual cells of Haloarcula marismortui . Extremophiles 4:373–376 [CrossRef]
    [Google Scholar]
  2. Angelidaki I., Petersen S. P., Ahring B. K. 1990; Effects of lipids on thermophilic anaerobic digestion and reduction of lipid inhibition upon addition of bentonite. Appl Microbiol Biotechnol 33:469–472
    [Google Scholar]
  3. Bredholt S., Sonne-Hansen J., Nielsen P., Mathrani I. M., Ahring B. K. 1999; Caldicellulosiruptor kristjanssonii sp. nov., a cellulolytic, extremely thermophilic, anaerobic bacterium. Int J Syst Bacteriol 49:991–996 [CrossRef]
    [Google Scholar]
  4. Cayol J.-L., Ollivier B., Patel B. K. C., Ravot G., Magot M., Ageron E., Grimont P. A. D., Garcia J.-L. 1995; Description of Thermoanaerobacter brockii subsp. lactiethylicus subsp. nov., isolated from a deep subsurface French oil well, a proposal to reclassify Thermoanaerobacter finnii as Thermoanaerobacter brockii subsp.finnii comb. nov., and an emended description of Thermoanaerobacter brockii . Int J Syst Bacteriol 45, 783–789 [CrossRef]
  5. De Ley J., Cattoir H., Reynaerts A. 1970; The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142 [CrossRef]
    [Google Scholar]
  6. Felsenstein J. 1989; phylip – Phylogeny inference package (version 3.2). Cladistics 5:164–166
    [Google Scholar]
  7. Garrity G. M., Johnson K. L., Bell J., Searles D. B. 2002; Taxonomic outline of the Procaryotes. In Bergey's Manual of Systematic Bacteriology 2nd edn., release 3.0 pp  1–366 New York: Springer; doi: 10.1007/bergeysoutline200210
    [Google Scholar]
  8. Gibbons N. E., Murray R. G. E. 1978; Proposals concerning the higher taxa of bacteria. Int J Syst Bacteriol 28:1–6 [CrossRef]
    [Google Scholar]
  9. Huß V. A. R., Festl H., Schleifer K. H. 1983; Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192 [CrossRef]
    [Google Scholar]
  10. Kumar S., Tamura K., Nei M. 1994; mega: molecular evolutionary genetics analysis software for microcomputers. Comput Appl Biosci 10:189–191
    [Google Scholar]
  11. Lane D. J. 1991; 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp  115–175 Edited by Stackebrandt E., Goodfellow M. Chichester: Wiley;
    [Google Scholar]
  12. Lee Y.-E., Jain M. K., Lee C., Lowe S. E., Zeikus J. G. 1993; Taxonomic distinction of saccharolytic thermophilic anaerobes: description of Thermoanaerobacterium xylanolyticum gen.nov., sp. nov., and Thermoanaerobacterium saccharolyticum gen. nov., sp. nov.; reclassification of Thermoanaerobium brockii , Clostridium thermosulfurogenes , and Clostridium thermohydrosulfuricum E100-69 as Thermoanaerobacter brockii comb. nov., Thermoanaerobacterium thermosulfurigenes comb.nov., and Thermoanaerobacter thermohydrosulfuricus comb. nov., respectively; and transfer of Clostridium thermohydrosulfuricum 39E to Thermoanaerobacter ethanolicus . Int J Syst Bacteriol 43:41–51 [CrossRef]
    [Google Scholar]
  13. Lee Y. J., Wagner I. D., Brice M. E., Kevbrin V. V., Mills G. L., Romanek C. S., Wiegel J. 2005; Thermosediminibacter oceani gen. nov., sp. nov. and Thermosediminibacter litoriperuensis sp. nov., new anaerobic thermophilic bacteria isolated from Peru Margin. Extremophiles 9375–383 [CrossRef]
  14. Lever M. 1973; Colorimetric and fluorometric carbohydrate determination with p -hydroxybenzoic acid hydrazide. Biochem Med 7:274–281 [CrossRef]
    [Google Scholar]
  15. Ljungdahl L. G., Wiegel J. 1986; Anaerobic fermentations. In Manual of Industrial Microbiology and Biotechnology pp  84–96 Edited by Demain A. L., Solomon N. A. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  16. Mladenovska Z., Mathrani I. M., Ahring B. K. 1995; Isolation and characterization of Caldicellulosiruptor lactoaceticus sp. nov., an extremely thermophilic, cellulolytic, anaerobic bacterium. Arch Microbiol 163:223–230 [CrossRef]
    [Google Scholar]
  17. Nielsen P., Mathrani I. M., Ahring B. K. 1993; Thermoanaerobium acetigenum spec. nov., a new anaerobic, extremely thermophilic, xylanolytic non-spore forming bacterium isolated from an Icelandic hot spring. Arch Microbiol 159:460–464 [CrossRef]
    [Google Scholar]
  18. Nielsen P., Mathrani I. M., Ahring B. K. 1994; Thermoanaerobium acetigenum sp. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB List no 49. Int J Syst Bacteriol 44:370–371 [CrossRef]
    [Google Scholar]
  19. Rainey F. A., Donnison A. M., Janssen P. H., Saul D., Rodrigo A., Bergquist P. L., Daniel R. M., Stackebrandt E., Morgan H. W. 1994; Description of Caldicellulosiruptor saccharolyticus gen. nov. sp. nov.: an obligately anaerobic, extremely thermophilic, cellulolytic bacterium. FEMS Microbiol Lett 120:263–266 [CrossRef]
    [Google Scholar]
  20. Rainey F. A., Donnison A. M., Janssen P. H., Saul D., Rodrigo A., Bergquist P. L., Daniel R. M., Stackebrandt E., Morgan H. W. 1995; Caldicellulosiruptor gen. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB , List no. 52. Int J Syst Bacteriol 45:197–198 [CrossRef]
    [Google Scholar]
  21. Rainey F. A., Ward-Rainey N. L., Janssen P. H., Hippe H., Stackebrandt E. 1996; Clostridium paradoxum DSM 7308T contains multiple 16S rRNA genes with heterogeneous intervening sequences. Microbiology 142:2087–2095 [CrossRef]
    [Google Scholar]
  22. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  23. Sissons C. H., Sharrock K. R., Daniel R. M., Morgan H. W. 1987; Isolation of cellulolytic anaerobic extreme thermophiles from New Zealand thermal sites. Appl Environ Microbiol 53:832–838
    [Google Scholar]
  24. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
  25. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
  26. Wiegel J. 1981; Distinction between the Gram reaction and the Gram type of bacteria. Int J Syst Bacteriol 31:88 [CrossRef]
    [Google Scholar]
  27. Wiegel J., Ljungdahl L. G. 1981; Thermoanaerobacter ethanolicus gen. nov., spec. nov. a new, extreme thermophilic, anaerobic bacterium. Arch Microbiol 128:343–348 [CrossRef]
    [Google Scholar]
  28. Zeikus J. G., Hegge P. W., Anderson M. A. 1979; Thermoanaerobium brockii gen. nov. and sp. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch Microbiol 122:41–48 [CrossRef]
    [Google Scholar]
/content/journal/ijsem/10.1099/ijs.0.63723-0
Loading
/content/journal/ijsem/10.1099/ijs.0.63723-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error