Thalassolituus marinus sp. nov., a hydrocarbon-utilizing marine bacterium

References

1. Cho J.-C., Giovannoni S. J. ( 2003 ). Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria . . Int J Syst Evol Microbiol 53, 1031–1036. [View Article] [PubMed]
   [Google Scholar]
2. Choo Y.-J., Lee K., Song J., Cho J.-C. ( 2007 ). Puniceicoccus vermicola gen. nov., sp. nov., a novel marine bacterium, and description of Puniceicoccaceae fam. nov., Puniceicoccales ord. nov., Opitutaceae fam. nov., Opitutales ord. nov. and Opitutae classis nov. in the phylum ‘Verrucomicrobia’. . Int J Syst Evol Microbiol 57, 532–537. [View Article] [PubMed]
   [Google Scholar]
3. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
4. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406–416. [View Article]
   [Google Scholar]
5. Jukes T. H., Cantor C. R. ( 1969 ). Evolution of protein molecules. . In Mammalian Protein Metabolism, pp. 21–32. Edited by Munro H. N. . New York:: Academic Press;.
   [Google Scholar]
6. Kim O. S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. et al. ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
   [Google Scholar]
7. Kloos K., Munch J. C., Schloter M. ( 2006 ). A new method for the detection of alkane-monooxygenase homologous genes (alkB) in soils based on PCR-hybridization. . J Microbiol Methods 66, 486–496. [View Article] [PubMed]
   [Google Scholar]
8. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. et al. ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 2947–2948. [View Article] [PubMed]
   [Google Scholar]
9. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S. et al. ( 2004 ). ARB: a software environment for sequence data. . Nucleic Acids Res 32, 1363–1371. [View Article] [PubMed]
   [Google Scholar]
10. McKew B. A., Coulon F., Osborn A. M., Timmis K. N., McGenity T. J. ( 2007 ). Determining the identity and roles of oil-metabolizing marine bacteria from the Thames estuary, UK. . Environ Microbiol 9, 165–176. [View Article] [PubMed]
    [Google Scholar]
11. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. . Int J Syst Bacteriol 39, 159–167. [View Article]
    [Google Scholar]
12. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233–241. [View Article]
    [Google Scholar]
13. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
14. Satomi M., Kimura B., Hamada T., Harayama S., Fujii T. ( 2002 ). Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov.. Int J Syst Evol Microbiol 52, 739–747. [View Article] [PubMed]
    [Google Scholar]
15. Swofford, D. L. (2002). paup*: Phylogenetic analysis using parsimony (and other methods), version 4. Sunderland, MA: Sinauer Associates.
16. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
17. Van Beilen J. B., Li Z., Duetz W. A., Smits T. H. M., Witholt B. ( 2003 ). Diversity of alkane hydroxylase systems in the environment. . Oil Gas Sci Technol Rev 58, 427–440. [View Article]
    [Google Scholar]
18. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. et al. ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]
19. Yakimov M. M., Giuliano L., Denaro R., Crisafi E., Chernikova T. N., Abraham W.-R., Luensdorf H., Timmis K. N., Golyshin P. N. ( 2004 ). Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons. . Int J Syst Evol Microbiol 54, 141–148. [View Article] [PubMed]
    [Google Scholar]
20. Yakimov M. M., Denaro R., Genovese M., Cappello S., D’Auria G., Chernikova T. N., Timmis K. N., Golyshin P. N., Giluliano L. ( 2005 ). Natural microbial diversity in superficial sediments of Milazzo Harbor (Sicily) and community successions during microcosm enrichment with various hydrocarbons. . Environ Microbiol 7, 1426–1441. [View Article] [PubMed]
    [Google Scholar]
21. Yakimov M. M., Timmis K. N., Golyshin P. N. ( 2007 ). Obligate oil-degrading marine bacteria. . Curr Opin Biotechnol 18, 257–266. [View Article] [PubMed]
    [Google Scholar]