1887

Abstract

A pink-pigmented, Gram-negative, rod-shaped, motile, strictly aerobic bacterium, designated strain 311, was isolated from desert sand in Xinjiang, China. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain 311 was related closely to AMV16 (94.6 % similarity). The DNA G+C content of strain 311 was 47.1 mol% and the major respiratory quinone was menaquinone 7 (MK-7). The main cellular fatty acids were Cω5 (29.9 %), iso-C (21.9 %), iso-C 3-OH (13.3 %) and summed feature 4 (iso-C I and/or anteiso-C B; 13.0 %). Based on phenotypic and chemotaxonomic data and phylogenetic analysis, strain 311 is considered to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 311 ( = CCTCC AB 207142  = KACC 15456).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.028423-0
2012-01-01
2020-01-27
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/62/1/96.html?itemId=/content/journal/ijsem/10.1099/ijs.0.028423-0&mimeType=html&fmt=ahah

References

  1. Bernardet J.-F., Nakagawa Y., Holmes B.. ( 2002;). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52:, 1049–1070. [CrossRef][PubMed]
    [Google Scholar]
  2. Buczolits S., Denner E. B., Vybiral D., Wieser M., Kämpfer P., Busse H.-J.. ( 2002;). Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov.. Int J Syst Evol Microbiol 52:, 445–456.[PubMed]
    [Google Scholar]
  3. Chun J., Lee J. H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W.. ( 2007;). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. . Int J Syst Evol Microbiol 57:, 2259–2261. [CrossRef][PubMed]
    [Google Scholar]
  4. Felsenstein J.. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39:, 783–791. [CrossRef]
    [Google Scholar]
  5. Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R.. ( 1994;). Methods for General and Molecular Bacteriology. Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  6. Kimura M.. ( 1980;). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16:, 111–120. [CrossRef][PubMed]
    [Google Scholar]
  7. Kumar S., Tamura K., Nei M.. ( 2004;). mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. . Brief Bioinform 5:, 150–163. [CrossRef][PubMed]
    [Google Scholar]
  8. Lau S. C. K., Tsoi M. M. Y., Li X., Plakhotnikova I., Dobretsov S., Wu M., Wong P.-K., Pawlik J. R., Qian P.-Y.. ( 2006;). Description of Fabibacter halotolerans gen. nov., sp. nov. and Roseivirga spongicola sp. nov., and reclassification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov.. Int J Syst Evol Microbiol 56:, 1059–1065. [CrossRef][PubMed]
    [Google Scholar]
  9. Mesbah M., Premachandran U., Whitman W. B.. ( 1989;). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39:, 159–167. [CrossRef]
    [Google Scholar]
  10. Nedashkovskaya O. I., Kim S. B., Lee D. H., Lysenko A. M., Shevchenko L. S., Frolova G. M., Mikhailov V. V., Lee K. H., Bae K. S.. ( 2005a;). Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum ‘Bacteroidetes’, isolated from the green alga Ulva fenestrata. . Int J Syst Evol Microbiol 55:, 231–234. [CrossRef][PubMed]
    [Google Scholar]
  11. Nedashkovskaya O. I., Kim S. B., Lysenko A. M., Park M. S., Mikhailov V. V., Bae K. S., Park H. Y.. ( 2005b;). Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga. . Int J Syst Evol Microbiol 55:, 1797–1800. [CrossRef][PubMed]
    [Google Scholar]
  12. Nedashkovskaya O. I., Vancanneyt M., Kim S. B., Bae K. S.. ( 2010;). Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and ‘Microscilla sericea’ Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov.. Int J Syst Evol Microbiol 60:, 1858–1863. [CrossRef][PubMed]
    [Google Scholar]
  13. Rainey F. A., Ward-Rainey N., Kroppenstedt R. M., Stackebrandt E.. ( 1996;). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov.. Int J Syst Bacteriol 46:, 1088–1092. [CrossRef][PubMed]
    [Google Scholar]
  14. Saitou N., Nei M.. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4:, 406–425.[PubMed]
    [Google Scholar]
  15. Seo H.-S., Kwon K. K., Yang S.-H., Lee H.-S., Bae S. S., Lee J.-H., Kim S.-J.. ( 2009;). Marinoscillum gen. nov., a member of the family ‘Flexibacteraceae’, with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov.. Int J Syst Evol Microbiol 59:, 1204–1208. [CrossRef][PubMed]
    [Google Scholar]
  16. Srinivas T. N. R., Anil Kumar P., Madhu S., Sunil B., Sharma T. V. R. S., Shivaji S.. ( 2011;). Cesiribacter andamanensis gen. nov., sp. nov., isolated from a soil sample of a mud volcano. . Int J Syst Evol Microbiol 61:, 1521–1527. [CrossRef][PubMed]
    [Google Scholar]
  17. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G.. ( 1997;). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25:, 4876–4882. [CrossRef][PubMed]
    [Google Scholar]
  18. Wilson K.. ( 1987;). Preparation of genomic DNA from bacteria. . In Current Protocols in Molecular Biology, pp. 2.4.1–2.4.2. Edited by Ausubel F. M., Brent R., Kingston R. E., Moore D. D., Seidman J. G., Smith J. A., Struhl K... New York:: Wiley;.
    [Google Scholar]
  19. Xie C. H., Yokota A.. ( 2003;). Phylogenetic analyses of Lampropedia hyalina based on the 16S rRNA gene sequence. . J Gen Appl Microbiol 49:, 345–349. [CrossRef][PubMed]
    [Google Scholar]
  20. Yoon J., Adachi K., Park S., Kasai H., Yokota A.. ( 2011;). Aureibacter tunicatorum gen. nov., sp. nov., a marine bacterium isolated from a coral reef sea squirt, and description of Flammeovirgaceae fam. nov.. Int J Syst Evol Microbiol 61:, 2342–2347. [CrossRef][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.028423-0
Loading
/content/journal/ijsem/10.1099/ijs.0.028423-0
Loading

Data & Media loading...

Most cited articles

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error