1887

Abstract

A novel actinomycete, strain P0402, was isolated from peat swamp forest soil collected in Thailand. Its taxonomic position was determined by using a polyphasic taxonomic approach. The chemotaxonomic characteristics of this strain matched those of the genus , i.e. the presence of -diaminopimelic acid and glycolyl muramic acid in the peptidoglycan, whole-cell sugar pattern D, phospholipid type II, and cellular fatty acid type 3b. Phylogenetic analysis based on 16S rRNA gene sequences revealed a close relationship between strain P0402 and JCM 13248 (99.0 % similarity), JCM 12345 (99.0 %), JCM 12870 (98.9 %), JCM 3125 (98.7 %), JCM 3031 (98.7 %), JCM 3156 (98.6 %) and JCM 10878 (98.5 %). It could be clearly distinguished from these type strains based on low levels of DNA–DNA relatedness and phenotypic differences. On the basis of the data presented, strain P0402 is suggested to represent a novel species of the genus , for which the name sp. nov. is proposed. The type strain is P0402 ( = JCM 15292  = PCU 315  = TISTR 1883).

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2011-05-01
2019-10-23
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References

  1. Ara I. , Kudo T. . ( 2007; ). Two new species of the genus Micromonospora: Micromonospora chokoriensis sp. nov. and Micromonospora coxensis sp. nov., isolated from sandy soil. . J Gen Appl Microbiol 53:, 29–37. [CrossRef] [PubMed]
    [Google Scholar]
  2. Arai T. . ( 1975; ). Culture Media for Actinomycetes. Tokyo:: The Society for Actinomycetes Japan;.
    [Google Scholar]
  3. Asano K. , Kawamoto I. . ( 1986; ). Catellatospora, a new genus of the Actinomycetales . . Int J Syst Bacteriol 36:, 512–517. [CrossRef]
    [Google Scholar]
  4. Collins M. D. , Pirouz T. , Goodfellow M. , Minnikin D. E. . ( 1977; ). Distribution of menaquinones in actinomycetes and corynebacteria. . J Gen Microbiol 100:, 221–230.[PubMed] [CrossRef]
    [Google Scholar]
  5. Euzéby, J. P. (2010). List of bacterial names with standing in nomenclature. http://www.bacterio.cict.fr/.
  6. Ezaki T. , Hashimoto Y. , Yabuuchi E. . ( 1989; ). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39:, 224–229. [CrossRef]
    [Google Scholar]
  7. Felsenstein J. . ( 1985; ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39:, 783–791. [CrossRef]
    [Google Scholar]
  8. Garcia L. C. , Martínez-Molina E. , Trujillo M. E. . ( 2010; ). Micromonospora pisi sp. nov., isolated from root nodules of Pisum sativum . . Int J Syst Evol Microbiol 60:, 331–337. [CrossRef] [PubMed]
    [Google Scholar]
  9. Gordon R. E. , Barnett D. A. , Handerhan J. E. , Pang C. H.-N. . ( 1974; ). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. . Int J Syst Bacteriol 24:, 54–63. [CrossRef]
    [Google Scholar]
  10. Hirsch P. , Mevs U. , Kroppenstedt R. M. , Schumann P. , Stackebrandt E. . ( 2004; ). Cryptoendolithic actinomycetes from antarctic sandstone rock samples: Micromonospora endolithica sp. nov. and two isolates related to Micromonospora coerulea Jensen 1932. . Syst Appl Microbiol 27:, 166–174. [CrossRef] [PubMed]
    [Google Scholar]
  11. Huang H. , Lv J. , Hu Y. , Fang Z. , Zhang K. , Bao S. . ( 2008; ). Micromonospora rifamycinica sp. nov., a novel actinomycete from mangrove sediment. . Int J Syst Evol Microbiol 58:, 17–20. [CrossRef] [PubMed]
    [Google Scholar]
  12. Hucker G. J. , Conn H. J. . ( 1923; ). Method of gram staining. . Tech Bull N Y St Agric Exp Stn 93:, 3–37.
    [Google Scholar]
  13. Itoh T. , Kudo T. , Parenti F. , Seino A. . ( 1989; ). Amended description of the genus Kineosporia, based on chemotaxonomic and morphological studies. . Int J Syst Bacteriol 39:, 168–173. [CrossRef]
    [Google Scholar]
  14. Jacobson E. , Grauville W. C. , Fogs C. E. . ( 1958; ). Colour Harmony Manual, , 4th edn.. Chicago:: Container Corporation of America;.
    [Google Scholar]
  15. Jongrungruangchok S. , Tanasupawat S. , Kudo T. . ( 2008; a). Micromonospora chaiyaphumensis sp. nov., isolated from Thai soils. . Int J Syst Evol Microbiol 58:, 924–928. [CrossRef] [PubMed]
    [Google Scholar]
  16. Jongrungruangchok S. , Tanasupawat S. , Kudo T. . ( 2008; b). Micromonospora krabiensis sp. nov., isolated from marine soil in Thailand. . J Gen Appl Microbiol 54:, 127–133. [CrossRef] [PubMed]
    [Google Scholar]
  17. Kämpfer P. , Kroppenstedt R. M. . ( 1996; ). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. . Can J Microbiol 42:, 989–1005. [CrossRef]
    [Google Scholar]
  18. Kasai H. , Tamura T. , Harayama S. . ( 2000; ). Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness. . Int J Syst Evol Microbiol 50:, 127–134.[PubMed] [CrossRef]
    [Google Scholar]
  19. Kawamoto I. . ( 1989; ). Genus Micromonospora Ørskov 1923, 147AL . . In Bergey’s Manual of Systematic Bacteriology, vol. 4, pp. 2442–2450. Edited by Williams S. T. , Sharpe M. E. , Holt J. G. . . Baltimore:: Williams & Wilkins;.
    [Google Scholar]
  20. Kawamoto I. , Oka T. , Nara T. . ( 1981; ). Cell wall composition of Micromonospora olivoasterospora, Micromonospora sagamiensis, and related organisms. . J Bacteriol 146:, 527–534.[PubMed]
    [Google Scholar]
  21. Kirby B. M. , Meyers P. R. . ( 2010; ). Micromonospora tulbaghiae sp. nov., isolated from the leaves of wild garlic, Tulbaghia violacea . . Int J Syst Evol Microbiol 60:, 1328–1333. [CrossRef] [PubMed]
    [Google Scholar]
  22. Kluge A. G. , Farris F. S. . ( 1969; ). Quantitative phyletics and the evolution of anurans. . Syst Zool 18:, 1–32. [CrossRef]
    [Google Scholar]
  23. Kroppenstedt R. M. . ( 1985; ). Fatty acid and menaquinone analysis of actinomycetes and related organisms. . In Chemical Methods in Bacterial Systematics, pp. 173–199. Edited by Goodfellow M. , Minnikin D. E. . . London:: Academic Press;.
    [Google Scholar]
  24. Kroppenstedt R. M. , Mayilraj S. , Wink J. M. , Kallow W. , Schumann P. , Secondini C. , Stackebrandt E. . ( 2005; ). Eight new species of the genus Micromonospora, Micromonospora citrea sp. nov., Micromonospora echinaurantiaca sp. nov., Micromonospora echinofusca sp. nov. Micromonospora fulviviridis sp. nov., Micromonospora inyonensis sp. nov., Micromonospora peucetia sp. nov., Micromonospora sagamiensis sp. nov., and Micromonospora viridifaciens sp. nov. . Syst Appl Microbiol 28:, 328–339. [CrossRef] [PubMed]
    [Google Scholar]
  25. Kudo T. , Itoh T. , Miyadoh S. , Shomura T. , Seino A. . ( 1993; ). Herbidospora gen. nov., a new genus of the family Streptosporangiaceae Goodfellow et al. 1990. . Int J Syst Bacteriol 43:, 319–328. [CrossRef] [PubMed]
    [Google Scholar]
  26. Lechevalier M. P. , Lechevalier H. . ( 1970; ). Chemical composition as a criterion in the classification of aerobic actinomycetes. . Int J Syst Bacteriol 20:, 435–443.[CrossRef]
    [Google Scholar]
  27. Lechevalier M. P. , De Bievre C. , Lechevalier H. . ( 1977; ). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. . Biochem Syst Ecol 5:, 249–260. [CrossRef]
    [Google Scholar]
  28. Mikami H. , Ishida Y. . ( 1983; ). Post-column fluorometric detection of reducing sugars in high performance liquid chromatography using arginine. . Bunseki Kagaku 32:, E207–E210.[CrossRef]
    [Google Scholar]
  29. Minnikin D. E. , O’Donnell A. G. , Goodfellow M. , Alderson G. , Athalye M. , Parlett J. H. . ( 1984; ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2:, 233–241. [CrossRef]
    [Google Scholar]
  30. Nakajima Y. , Kitpreechavanich V. , Suzuki K. , Kudo T. . ( 1999; ). Microbispora corallina sp. nov., a new species of the genus Microbispora isolated from Thai soil. . Int J Syst Bacteriol 49:, 1761–1767. [CrossRef] [PubMed]
    [Google Scholar]
  31. Ørskov J. . ( 1923; ). Investigations into the Morphology of the Ray Fungi. Copenhagen:: Levin and Munksgaard;.
    [Google Scholar]
  32. Saitou N. , Nei M. . ( 1987; ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4:, 406–425.[PubMed]
    [Google Scholar]
  33. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI.
  34. Shirling E. B. , Gottlieb D. . ( 1966; ). Methods for characterization of Streptomyces species. . Int J Syst Bacteriol 16:, 313–340. [CrossRef]
    [Google Scholar]
  35. Staneck J. L. , Roberts G. D. . ( 1974; ). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. . Appl Microbiol 28:, 226–231.[PubMed]
    [Google Scholar]
  36. Tamaoka J. . ( 1994; ). Determination of DNA base composition. . In Chemical Methods in Prokaryotic Systematics, pp. 463–470. Edited by Goodfellow M. , O’Donnell A. G. . . Chichester:: Wiley;.
    [Google Scholar]
  37. Tamaoka J. , Komagata K. . ( 1984; ). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. . FEMS Microbiol Lett 25:, 125–128. [CrossRef]
    [Google Scholar]
  38. Tamura K. , Dudley J. , Nei M. , Kumar S. . ( 2007; ). mega 4: molecular evolutionary genetics analysis (mega) software version 4.0. . Mol Biol Evol 24:, 1596–1599. [CrossRef] [PubMed]
    [Google Scholar]
  39. Tanasupawat S. , Jongrungruangchok S. , Kudo T. . ( 2010; ). Micromonospora marina sp. nov., isolated from sea sand. . Int J Syst Evol Microbiol 60:, 648–652. [CrossRef] [PubMed]
    [Google Scholar]
  40. Thawai C. , Tanasupawat S. , Itoh T. , Suwanborirux K. , Kudo T. . ( 2004; ). Micromonospora aurantionigra sp. nov., isolated from a peat swamp forest in Thailand. . Actinomycetologica 18:, 8–14. [CrossRef]
    [Google Scholar]
  41. Thawai C. , Tanasupawat S. , Itoh T. , Suwanborirux K. , Suzuki K. , Kudo T. . ( 2005; a). Micromonospora eburnea sp. nov., isolated from a Thai peat swamp forest. . Int J Syst Evol Microbiol 55:, 417–422. [CrossRef] [PubMed]
    [Google Scholar]
  42. Thawai C. , Tanasupawat S. , Itoh T. , Suwanborirux K. , Kudo T. . ( 2005; b). Micromonospora siamensis sp. nov., isolated from Thai peat swamp forest. . J Gen Appl Microbiol 51:, 229–234. [CrossRef] [PubMed]
    [Google Scholar]
  43. Thawai C. , Tanasupawat S. , Suwanborirux K. , Itoh T. , Kudo T. . ( 2007; ). Micromonospora narathiwatensis sp. nov., from Thai peat swamp forest soils. . J Gen Appl Microbiol 53:, 287–293. [CrossRef] [PubMed]
    [Google Scholar]
  44. Thompson J. D. , Gibson T. J. , Plewniak F. , Jeanmougin F. , Higgins D. G. . ( 1997; ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25:, 4876–4882. [CrossRef] [PubMed]
    [Google Scholar]
  45. Trujillo M. E. , Fernández-Molinero C. , Velázquez E. , Kroppenstedt R. M. , Schumann P. , Mateos P. F. , Martínez-Molina E. . ( 2005; ). Micromonospora mirobrigensis sp. nov. . Int J Syst Evol Microbiol 55:, 877–880. [CrossRef] [PubMed]
    [Google Scholar]
  46. Trujillo M. E. , Kroppenstedt R. M. , Schumann P. , Carro L. , Martínez-Molina E. . ( 2006; ). Micromonospora coriariae sp. nov., isolated from root nodules of Coriaria myrtifolia . . Int J Syst Evol Microbiol 56:, 2381–2385. [CrossRef] [PubMed]
    [Google Scholar]
  47. Trujillo M. E. , Kroppenstedt R. M. , Fernández-Molinero C. , Schumann P. , Martínez-Molina E. . ( 2007; ). Micromonospora lupini sp. nov. and Micromonospora saelicesensis sp. nov., isolated from root nodules of Lupinus angustifolius . . Int J Syst Evol Microbiol 57:, 2799–2804. [CrossRef] [PubMed]
    [Google Scholar]
  48. Uchida K. , Aida K. . ( 1984; ). An improved method for the glycolate test for simple identification of the acyl type of bacterial cell walls. . J Gen Appl Microbiol 30:, 131–134. [CrossRef]
    [Google Scholar]
  49. Wang C. , Xu X.-X. , Qu Z. , Wang H.-L. , Lin H.-P. , Xie Q.-Y. , Ruan J.-S. , Hong K. . ( 2011; ). Micromonospora rhizosphaerae sp. nov., isolated from mangrove rhizosphere soil. . Int J Syst Evol Microbiol 61:, 320–324. [CrossRef] [PubMed]
    [Google Scholar]
  50. Wayne L. G. , Brenner D. J. , Colwell R. R. , Grimont P. A. D. , Kandler O. , Krichevsky M. I. , Moore L. H. , Moore W. E. C. , Murray R. G. E. et al. ( 1987; ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on the reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37:, 463–464. [CrossRef]
    [Google Scholar]
  51. Williams S. T. , Cross T. . ( 1971; ). Actinomycetes. . Methods Microbiol 4:, 295–334. [CrossRef]
    [Google Scholar]
  52. Yamada K. , Komagata K. . ( 1970; ). Taxonomic studies on coryneform bacteria. III. DNA base composition of coryneform bacteria. . J Gen Appl Microbiol 16:, 215–224. [CrossRef]
    [Google Scholar]
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