1887

Abstract

A Gram-staining-negative, non-motile, yellow-pigmented bacterial strain, designated HMD1043, was isolated from a mesotrophic artificial lake in Korea. The major fatty acids were anteiso-C (28.3 %), iso-C (22.9 %), summed feature 9 (comprising iso-Cω9 and/or 10-methyl C; 8.8 %) and iso-C (5.3 %). The DNA G+C content was 31.3 mol%. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD1043 formed a lineage within the genus and was most closely related to AT1013 (96.8 % 16S rRNA gene sequence similarity) and AT1047 (96.4 %). On the basis of the evidence presented in this study, strain HMD1043 is described as belonging to a novel species of the genus , for which the name sp. nov. is proposed. The type strain is HMD1043 ( = KCTC 22744  = CECT 7547).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.022590-0
2011-06-01
2020-01-24
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/61/6/1413.html?itemId=/content/journal/ijsem/10.1099/ijs.0.022590-0&mimeType=html&fmt=ahah

References

  1. Asker D., Beppu T., Ueda K.. ( 2007;). Mesoflavibacter zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae. . Syst Appl Microbiol 30:, 291–296. [CrossRef].[PubMed]
    [Google Scholar]
  2. Bernardet J.-F., Vancanneyt M., Matte-Tailliez O., Grisez L., Tailliez P., Bizet C., Nowakowski M., Kerouault B., Swings J.. ( 2005;). Polyphasic study of Chryseobacterium strains isolated from diseased aquatic animals. . Syst Appl Microbiol 28:, 640–660. [CrossRef].[PubMed]
    [Google Scholar]
  3. Bernardet J.-F., Bruun B., Hugo C.. ( 2006;). The genera Chryseobacterium and Elizabethkingia. . In The Prokaryotes: a Handbook on the Biology of Bacteria, , 3rd edn., vol. 7, pp. 638–676. Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E... New York:: Springer;.
    [Google Scholar]
  4. Campbell S., Harada R. M., Li Q. X.. ( 2008;). Chryseobacterium arothri sp. nov., isolated from the kidneys of a pufferfish. . Int J Syst Evol Microbiol 58:, 290–293. [CrossRef].[PubMed]
    [Google Scholar]
  5. Cho J.-C., Giovannoni S. J.. ( 2003;). Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the alpha-Proteobacteria. . Int J Syst Evol Microbiol 53:, 1031–1036. [CrossRef].[PubMed]
    [Google Scholar]
  6. Chun J., Lee J.-H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y.-W.. ( 2007;). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. . Int J Syst Evol Microbiol 57:, 2259–2261. [CrossRef].[PubMed]
    [Google Scholar]
  7. de Beer H., Hugo C. J., Jooste P. J., Vancanneyt M., Coenye T., Vandamme P.. ( 2006;). Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa. . Int J Syst Evol Microbiol 56:, 1317–1322. [CrossRef].[PubMed]
    [Google Scholar]
  8. Felsenstein J.. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39:, 783–791. [CrossRef]
    [Google Scholar]
  9. Fitch W. M.. ( 1971;). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20:, 406–416. [CrossRef]
    [Google Scholar]
  10. Kämpfer P., Lodders N., Vaneechoutte M., Wauters G.. ( 2009;). Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov.. Int J Syst Evol Microbiol 59:, 2238–2240. [CrossRef].[PubMed]
    [Google Scholar]
  11. Kim K. K., Bae H.-S., Schumann P., Lee S.-T.. ( 2005;). Chryseobacterium daecheongense sp. nov., isolated from freshwater lake sediment. . Int J Syst Evol Microbiol 55:, 133–138. [CrossRef].[PubMed]
    [Google Scholar]
  12. Kim K. K., Lee K. C., Oh H.-M., Lee J.-S.. ( 2008;). Chryseobacterium aquaticum sp. nov., isolated from a water reservoir. . Int J Syst Evol Microbiol 58:, 533–537. [CrossRef].[PubMed]
    [Google Scholar]
  13. Lee K., Lee H. K., Choi T.-H., Cho J.-C.. ( 2007;). Sejongia marina sp. nov., isolated from Antarctic seawater. . Int J Syst Evol Microbiol 57:, 2917–2921. [CrossRef].[PubMed]
    [Google Scholar]
  14. Li Y., Kawamura Y., Fujiwara N., Naka T., Liu H., Huang X., Kobayashi K., Ezaki T.. ( 2003;). Chryseobacterium miricola sp. nov., a novel species isolated from condensation water of space station Mir. . Syst Appl Microbiol 26:, 523–528. [CrossRef].[PubMed]
    [Google Scholar]
  15. MacFaddin J. F.. ( 1980;). Biochemical Tests for Identification of Medical Bacteria, , 2nd edn.. Baltimore, MD:: Williams & Wilkins;.
    [Google Scholar]
  16. Mesbah M., Whitman W. B.. ( 1989;). Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. . J Chromatogr A 479:, 297–306. [CrossRef].[PubMed]
    [Google Scholar]
  17. Quan Z.-X., Kim K. K., Kim M.-K., Jin L., Lee S.-T.. ( 2007;). Chryseobacterium caeni sp. nov., isolated from bioreactor sludge. . Int J Syst Evol Microbiol 57:, 141–145. [CrossRef].[PubMed]
    [Google Scholar]
  18. Saitou N., Nei M.. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4:, 406–425.[PubMed]
    [Google Scholar]
  19. Shen F.-T., Kämpfer P., Young C.-C., Lai W.-A., Arun A. B.. ( 2005;). Chryseobacterium taichungense sp. nov., isolated from contaminated soil. . Int J Syst Evol Microbiol 55:, 1301–1304. [CrossRef].[PubMed]
    [Google Scholar]
  20. Szoboszlay S., Atzél B., Kukolya J., Tóth E. M., Márialigeti K., Schumann P., Kriszt B.. ( 2008;). Chryseobacterium hungaricum sp. nov., isolated from hydrocarbon-contaminated soil. . Int J Syst Evol Microbiol 58:, 2748–2754. [CrossRef].[PubMed]
    [Google Scholar]
  21. Tamura K., Dudley J., Nei M., Kumar S.. ( 2007;). mega4: molecular evolutionary genetics analysis (mega) software version 4.0. . Mol Biol Evol 24:, 1596–1599. [CrossRef].[PubMed]
    [Google Scholar]
  22. Vandamme P., Bernardet J.-F., Segers P., Kersters K., Holmes B.. ( 1994;). New perspectives in the classification of the Flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev.. Int J Syst Bacteriol 44:, 827–831. [CrossRef]
    [Google Scholar]
  23. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. et al. ( 1987;). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37:, 463–464. [CrossRef]
    [Google Scholar]
  24. Weon H.-Y., Kim B.-Y., Yoo S.-H., Kwon S.-W., Stackebrandt E., Go S.-J.. ( 2008;). Chryseobacterium soli sp. nov. and Chryseobacterium jejuense sp. nov., isolated from soil samples from Jeju, Korea. . Int J Syst Evol Microbiol 58:, 470–473. [CrossRef].[PubMed]
    [Google Scholar]
  25. Yi H., Yoon H. I., Chun J.. ( 2005;). Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic. . Int J Syst Evol Microbiol 55:, 409–416. [CrossRef].[PubMed]
    [Google Scholar]
  26. Young C.-C., Kämpfer P., Shen F.-T., Lai W.-A., Arun A. B.. ( 2005;). Chryseobacterium formosense sp. nov., isolated from the rhizosphere of Lactuca sativa L. (garden lettuce). . Int J Syst Evol Microbiol 55:, 423–426. [CrossRef].[PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.022590-0
Loading
/content/journal/ijsem/10.1099/ijs.0.022590-0
Loading

Data & Media loading...

Most cited articles

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error