1887

Abstract

Combination of PCR and Elek testing to identify toxigenic corynebacteria has revealed organisms described as non-toxigenic toxin-gene bearing (NTTB) or (i.e. PCR positive; Elek negative). These organisms carry part or all of , but are unable to express diphtheria toxin (DT) and present a challenge to clinical and public health case management.

There are few data on the theoretical risk of NTTB reversion to toxigenicity. This unique cluster and subsequent epidemiologically linked isolates allowed the opportunity to determine any change in DT expression status.

To characterize a cluster of infections due to NTTB in a skin clinic and subsequent cases in two household contacts.

Epidemiological and microbiological investigations were carried out according to existing national guidance at the time. Susceptibility testing used gradient strips. The operon analysis and multi-locus sequence typing (MLST) was derived from whole-genome sequencing. Alignment of the operon and phylogenetic analyses were performed using clustalW, , the public core-genome MLST (cgMLST) scheme and an in-house bioinformatic single nucleotide polymorphism (SNP) typing pipeline.

Isolates of NTTB were recovered from four cases (cases 1 to 4) with epidermolysis bullosa attending the clinic. Two further isolates were subsequently recovered from case 4, >18 months later, and from two household contacts (cases 5 and 6) after a further 18 months and 3.5 years, respectively. All eight strains were NTTB biovar mitis, belonged to the same sequence type (ST-336) with the same deletion in . Phylogenetic analysis showed relatively high diversity between the eight strains with 7–199 SNP and 3–109 cgMLST loci differences between them. The number of SNPs between the three isolates from case 4 and two household contacts (cases 5 and 6) was 44–70 with 28–38 cgMLST loci differences.

We report a cluster of NTTB cases in a skin clinic and evidence of onward household transmission. We conclude the deletion in the was responsible for the non-expression of DT. There was no evidence of reversion to DT expression over the 6.5 year period studied. These data informed revision to guidance in the management of NTTB cases and their contacts in the UK.

  • This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.
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2023-06-29
2024-05-02
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References

  1. Gower CM, Scobie A, Fry NK, Litt DJ, Cameron JC et al. The changing epidemiology of diphtheria in the United Kingdom, 2009 to 2017. Euro Surveill 2020; 25:1900462 [View Article] [PubMed]
    [Google Scholar]
  2. Edwards D, Kent D, Lester C, Brown CS, Murphy ME et al. Transmission of toxigenic Corynebacterium diphtheriae by a fully immunised resident returning from a visit to West Africa, United Kingdom, 2017. Euro Surveill 2018; 23:1700681 [View Article] [PubMed]
    [Google Scholar]
  3. European Centre for Disease Prevention and Control Increase of Reported Diphtheria Cases Due to Corynebacterium Diphtheriae among Migrants in Europe – 6 October Stockholm: ECDC; 2022
    [Google Scholar]
  4. World health organization Vaccine-preventable disease update: reported diphtheria cases in the WHO European region, 2022: 10 October 2022 vaccine-preventable disease update: reported diphtheria cases in the WHO European Region; 2022 accessed 10 October 2022
  5. UK Health Security Agency Diphtheria: cases among asylum seekers in England, health protection report (data to 25 November 2022); 2023 https://www.gov.uk/government/publications/diphtheria-cases-among-asylum-seekers-in-england-2022/diphtheria-cases-among-asylum-seekers-in-england-2022 accessed 23 May 2023
  6. Fourel G, Phalipon A, Kaczorek M. Evidence for direct regulation of diphtheria toxin gene transcription by an Fe2+-dependent DNA-binding repressor, DtoxR, in Corynebacterium diphtheriae. Infect Immun 1989; 57:3221–3225 [View Article] [PubMed]
    [Google Scholar]
  7. World Health Organization WHO laboratory manual for the diagnosis of diphtheria and other related infections. Licence: CC BY-NC-SA 3.0 IGO. Geneva: World Health Organization; 2021
  8. Engler KH, Glushkevich T, Mazurova IK, George RC, Efstratiou A. A modified Elek test for detection of toxigenic corynebacteria in the diagnostic laboratory. J Clin Microbiol 1997; 35:495–498 [View Article] [PubMed]
    [Google Scholar]
  9. Barksdale L, Garmise L, Horibata K. Virulence, toxinogeny, and lysogeny in Corynebacterium diphtheriae. Ann N Y Acad Sci 1960; 88:1093–1108 [View Article] [PubMed]
    [Google Scholar]
  10. Barakett V, Morel G, Lesage D, Petit JC. Septic arthritis due to a nontoxigenic strain of Corynebacterium diphtheriae subspecies mitis. Clin Infect Dis 1993; 17:520–521 [View Article] [PubMed]
    [Google Scholar]
  11. Tiley SM, Kociuba KR, Heron LG, Munro R. Infective endocarditis due to nontoxigenic Corynebacterium diphtheriae: report of seven cases and review. Clin Infect Dis 1993; 16:271–275 [View Article] [PubMed]
    [Google Scholar]
  12. Wilson AP. The return of Corynebacterium diphtheriae: the rise of non-toxigenic strains. J Hosp Infect 1995; 30 Suppl:306–312 [View Article] [PubMed]
    [Google Scholar]
  13. Funke G, Altwegg M, Frommelt L, von Graevenitz A. Emergence of related nontoxigenic Corynebacterium diphtheriae biotype mitis strains in Western Europe. Emerg Infect Dis 1999; 5:477–480 [View Article] [PubMed]
    [Google Scholar]
  14. Reacher M, Ramsay M, White J, De Zoysa A, Efstratiou A et al. Nontoxigenic Corynebacterium diphtheriae: an emerging pathogen in England and Wales?. Emerg Infect Dis 2000; 6:640–645 [View Article] [PubMed]
    [Google Scholar]
  15. Zasada AA, Zaleska M, Podlasin RB, Seferynska I. The first case of septicemia due to nontoxigenic Corynebacterium diphtheriae in Poland: case report. Ann Clin Microbiol Antimicrob 2005; 4:8 [View Article] [PubMed]
    [Google Scholar]
  16. Ott L, Höller M, Gerlach RG, Hensel M, Rheinlaender J et al. Corynebacterium diphtheriae invasion-associated protein (DIP1281) is involved in cell surface organization, adhesion and internalization in epithelial cells. BMC Microbiol 2010; 10:2 [View Article] [PubMed]
    [Google Scholar]
  17. Edwards B, Hunt AC, Hoskisson PA. Recent cases of non-toxigenic Corynebacterium diphtheriae in Scotland: justification for continued surveillance. J Med Microbiol 2011; 60:561–562 [View Article] [PubMed]
    [Google Scholar]
  18. Lowe CF, Bernard KA, Romney MG. Cutaneous diphtheria in the urban poor population of Vancouver, British Columbia, Canada: a 10-year review. J Clin Microbiol 2011; 49:2664–2666 [View Article] [PubMed]
    [Google Scholar]
  19. Muttaiyah S, Best EJ, Freeman JT, Taylor SL, Morris AJ et al. Corynebacterium diphtheriae endocarditis: a case series and review of the treatment approach. Int J Infect Dis 2011; 15:e584–8 [View Article] [PubMed]
    [Google Scholar]
  20. Peixoto RS, Hacker E, Antunes CA, Weerasekera D, Dias AA et al. Pathogenic properties of a Corynebacterium diphtheriae strain isolated from a case of osteomyelitis. J Med Microbiol 2016; 65:1311–1321 [View Article] [PubMed]
    [Google Scholar]
  21. Massmann R, Zavadilová J, Drozenová J, Fiksa D, Smíšková D. Septicemia in an immunocompetent adult in the Czech Republic caused by Corynebacterium diphtheriae nontoxigenic strain biotype mitis: emergence of invasive cases in Western Europe. Braz J Infect Dis 2020; 24:89–91 [View Article] [PubMed]
    [Google Scholar]
  22. Mel’nikov VG, Kombarova SI, Borisova OI, Volozhantsev NV, Verevkin VV et al. Corynebacterium diphtheriae nontoxigenic strain carrying the gene of diphtheria toxin. Zh Mikrobiol Epidemiol Immunobiol 20043–7 [PubMed]
    [Google Scholar]
  23. Zakikhany K, Neal S, Efstratiou A. Emergence and molecular characterisation of non-toxigenic tox gene-bearing Corynebacterium diphtheriae biovar mitis in the United Kingdom, 2003-2012. Euro Surveill 2014; 19:20819 [View Article] [PubMed]
    [Google Scholar]
  24. Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A et al. Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 2017; 18:873 [View Article] [PubMed]
    [Google Scholar]
  25. Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL et al. Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 2020; 12:107 [View Article] [PubMed]
    [Google Scholar]
  26. Williams MM, Waller JL, Aneke JS, Weigand MR, Diaz MH et al. Detection and characterization of diphtheria toxin gene-bearing Corynebacterium species through a new real-Time PCR assay. J Clin Microbiol 2020; 58:e00639-20 [View Article] [PubMed]
    [Google Scholar]
  27. Public Health England Public health control and management of diphtheria (in England and Wales) 23/03/2015; 2015 https://www.gov.uk/government/publications/diphtheria-public-healthcontrol-and-management-in-england-and-wales
  28. De Zoysa A, Efstratiou A, Mann G, Harrison TG, Fry NK. Development, validation and implementation of a quadruplex real-time PCR assay for identification of potentially toxigenic corynebacteria. J Med Microbiol 2016; 65:1521–1527 [View Article] [PubMed]
    [Google Scholar]
  29. Public Health England Investigation of Throat Related Specimens. UK 604 Standards for Microbiology Investigations. B 9 Issue 9; 2015 https://www.gov.uk/government/publications/smi-b-9-investigation-of-throat-swabs
  30. König C, Meinel DM, Margos G, Konrad R, Sing A. Multilocus sequence typing of Corynebacterium ulcerans provides evidence for zoonotic transmission and for increased prevalence of certain sequence types among toxigenic strains. J Clin Microbiol 2014; 52:4318–4324 [View Article] [PubMed]
    [Google Scholar]
  31. Both L, Collins S, de Zoysa A, White J, Mandal S et al. Molecular and epidemiological review of toxigenic diphtheria infections in England between 2007 and 2013. J Clin Microbiol 2015; 53:567–572 [View Article] [PubMed]
    [Google Scholar]
  32. Badell E, Guillot S, Tulliez M, Pascal M, Panunzi LG et al. Improved quadruplex real-time PCR assay for the diagnosis of diphtheria. J Med Microbiol 2019; 68:1455–1465 [View Article] [PubMed]
    [Google Scholar]
  33. Kapatai G, Sheppard CL, Al-Shahib A, Litt DJ, Underwood AP et al. Whole genome sequencing of Streptococcus pneumoniae: development, evaluation and verification of targets for serogroup and serotype prediction using an automated pipeline. PeerJ 2016; 4:e2477 [View Article] [PubMed]
    [Google Scholar]
  34. Tewolde R, Dallman T, Schaefer U, Sheppard CL, Ashton P et al. MOST: a modified MLST typing tool based on short read sequencing. PeerJ 2016; 4:e2308 [View Article] [PubMed]
    [Google Scholar]
  35. Jolley KA, Bray JE, Maiden MCJ. Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications. Wellcome Open Res 2018; 3:124 [View Article] [PubMed]
    [Google Scholar]
  36. Wick RR, Judd LM, Gorrie CL, Holt KE. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PLoS Comput Biol 2017; 13:e1005595 [View Article] [PubMed]
    [Google Scholar]
  37. Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics 2014; 30:2068–2069 [View Article] [PubMed]
    [Google Scholar]
  38. Cerdeño-Tárraga AM, Efstratiou A, Dover LG, Holden MTG, Pallen M et al. The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. Nucleic Acids Res 2003; 31:6516–6523 [View Article] [PubMed]
    [Google Scholar]
  39. Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 2009; 25:1422–1423 [View Article] [PubMed]
    [Google Scholar]
  40. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22:4673–4680 [View Article] [PubMed]
    [Google Scholar]
  41. Kumar S, Stecher G, Li M, Knyaz C, Tamura K. MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Mol Biol Evol 2018; 35:1547–1549 [View Article] [PubMed]
    [Google Scholar]
  42. Zhou Z, Alikhan N-F, Sergeant MJ, Luhmann N, Vaz C et al. GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens. Genome Res 2018; 28:1395–1404 [View Article] [PubMed]
    [Google Scholar]
  43. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J et al. BLAST+: architecture and applications. BMC Bioinformatics 2009; 10:421 [View Article] [PubMed]
    [Google Scholar]
  44. Pivot D, Fanton A, Badell-Ocando E, Benouachkou M, Astruc K et al. Carriage of a single strain of nontoxigenic Corynebacterium diphtheriae bv. Belfanti (Corynebacterium belfantii) in four patients with cystic fibrosis. J Clin Microbiol 2019; 57:e00042-19 [View Article] [PubMed]
    [Google Scholar]
  45. Hennart M, Crestani C, Bridel S, Armatys N, Bremont S et al. A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence. bioRxiv [View Article]
    [Google Scholar]
  46. Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL et al. Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 2020; 12:107 [View Article] [PubMed]
    [Google Scholar]
  47. Hall AJ, Cassiday PK, Bernard KA, Bolt F, Steigerwalt AG et al. Novel Corynebacterium diphtheriae in domestic cats. Emerg Infect Dis 2010; 16:688–691 [View Article] [PubMed]
    [Google Scholar]
  48. Groman N, Cianciotto N, Bjorn M, Rabin M. Detection and expression of DNA homologous to the tox gene in nontoxinogenic isolates of Corynebacterium diphtheriae. Infect Immun 1983; 42:48–56 [View Article] [PubMed]
    [Google Scholar]
  49. Wagner KS, White JM, Neal S, Crowcroft NS, Kuprevičiene N et al. Screening for Corynebacterium diphtheriae and Corynebacterium ulcerans in patients with upper respiratory tract infections 2007-2008: a multicentre European study. Clin Microbiol Infect 2011; 17:519–525 [View Article] [PubMed]
    [Google Scholar]
  50. Fuursted K, Søes LM, Crewe BT, Stegger M, Andersen PS et al. Non-toxigenic tox gene-bearing Corynebacterium ulcerans in a traumatic ulcer from a human case and his asymptomatic dog. Microbes Infect 2015; 17:717–719 [View Article] [PubMed]
    [Google Scholar]
  51. Billard-Pomares T, Rouyer C, Walewski V, Badell-Ocando E, Dumas M et al. Diagnosis in France of a non-toxigenic tox gene-bearing strain of Corynebacterium diphtheriae in a young male back from Senegal. Open Forum Infect Dis 2017; 4:fw271 [View Article] [PubMed]
    [Google Scholar]
  52. Hoefer A, Pampaka D, Herrera-León S, Peiró S, Varona S et al. Molecular and epidemiological characterization of toxigenic and nontoxigenic Corynebacterium diphtheriae, Corynebacterium belfantii, Corynebacterium rouxii, and Corynebacterium ulcerans isolates identified in Spain from 2014 to 2019. J Clin Microbiol 2021; 59:e02410-20 [View Article] [PubMed]
    [Google Scholar]
  53. Doyle CJ, Mazins A, Graham RMA, Fang N-X, Smith HV et al. Sequence analysis of toxin gene-bearing Corynebacterium diphtheriae strains, Australia. Emerg Infect Dis 2017; 23:105–107 [View Article] [PubMed]
    [Google Scholar]
  54. UK Health Security Agency Public health control and management of diphtheria in England 2022 guidelines. n.d https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/1117027/diphtheria-guidelines-2022_v17_111122.pdf
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