1887

Abstract

Successful adaptation of to constant environmental challenges demands the operation of a wide range of regulatory control mechanisms, some of which are global, while others are specific. Here, we show that the ability of acetate-negative phenotype strains of devoid of acetate kinase (AK) and phosphotransacetylase (PTA) to assimilate acetate when challenged at the end of growth on acetogenic substrates is explicable by the co-expression of acetyl CoA-synthetase (AcCoA-S) and acetate permease (AP). Furthermore, mRNA transcript measurements for , together with the enzymatic activities of their corresponding enzymes, acetyl CoA synthetase (AcCoA-S) and isocitrate lyase (ICL), clearly demonstrate that the expression of the two enzymes is inextricably linked and triggered in response to growth rate threshold signal (0.4 h 0.03: n4). Interestingly, further restriction of carbon supply to the level of starvation led to the repression of (AcCoA-S), (AK) and (PTA). Further, we provide evidence that the reaction sequence catalysed by PTA, AK and AcCoA-S is not in operation at low growth rates and that the reaction catalysed by AcCoA-S is not merely an ATP-dissipating reaction but rather advantageous, as it elevates the available free energy (Δ°) in central metabolism. Moreover, the transcriptomic data reinforce the view that the expression of PEP carboxykinase is essential in gluconeogenic phenotypes.

Loading

Article metrics loading...

/content/journal/micro/10.1099/mic.0.001230
2022-09-01
2024-05-09
Loading full text...

Full text loading...

/deliver/fulltext/micro/168/9/mic001230.html?itemId=/content/journal/micro/10.1099/mic.0.001230&mimeType=html&fmt=ahah

References

  1. Guest JR, Russell GC. Complexes and complexities of the citric acid cycle in Escherichia coli. Curr Top Cell Regul 1992; 33:231–247 [View Article] [PubMed]
    [Google Scholar]
  2. Flint DH, Emptage MH, Guest JR. Fumarase a from Escherichia coli: purification and characterization as an iron-sulfur cluster containing enzyme. Biochemistry 1992; 31:10331–10337 [View Article] [PubMed]
    [Google Scholar]
  3. Cunningham L, Georgellis D, Green J, Guest JR. Co-regulation of lipoamide dehydrogenase and 2-oxoglutarate dehydrogenase synthesis in Escherichia coli: characterisation of an ArcA binding site in the lpd promoter. FEMS Microbiol Lett 1998; 169:403–408 [View Article]
    [Google Scholar]
  4. Walsh K, Koshland DE. Determination of flux through the branch point of two metabolic cycles. The tricarboxylic acid cycle and the glyoxylate shunt. J Biol Chem 1984; 259:9646–9654 [PubMed]
    [Google Scholar]
  5. Holms WH. The central metabolic pathways of Escherichia coli: relationship between flux and control at a branch point, efficiency of conversion to biomass and excretion to acetate. Curr Top Cell Regul 1986; 28:59–105
    [Google Scholar]
  6. Cozzone AJ, El-Mansi EMT. Control of isocitrate dehydrogenase catalytic activity by protein phosphorylation in Escherichia coli. J Mol Microbiol Biotechnol 2005; 9:132–146 [View Article] [PubMed]
    [Google Scholar]
  7. El-Mansi M, Cozzone AJ, Shiloach J, Eikmanns BJ. Control of carbon flux through enzymes of central and intermediary metabolism during growth of Escherichia coli on acetate. Curr Opin Microbiol 2006; 9:173–179 [View Article]
    [Google Scholar]
  8. El-Mansi M, Phue J-N, Shiloach J. Expression of the ace operon in Escherichia coli is triggered in response to growth rate-dependent flux-signal of ATP. FEMS Microbiol Lett 2021; 368:fnaa221 [View Article]
    [Google Scholar]
  9. Perrenoud A, Sauer U. Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli. J Bacteriol 2005; 187:3171–3179 [View Article]
    [Google Scholar]
  10. Gyaneshwar P, Paliy O, McAuliffe J, Popham DL, Jordan MI et al. Sulfur and nitrogen limitation in Escherichia coli K-12: specific homeostatic responses. J Bacteriol 2005; 187:1074–1090 [View Article] [PubMed]
    [Google Scholar]
  11. El-Mansi EM, Holms WH. Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures. J Gen Microbiol 1989; 135:2875–2883 [View Article]
    [Google Scholar]
  12. Luli GW, Strohl WR. Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations. Appl Environ Microbiol 1990; 56:1004–1011 [View Article] [PubMed]
    [Google Scholar]
  13. Eiteman MA, Altman E. Overcoming acetate in Escherichia coli recombinant protein fermentations. Trends Biotechnol 2006; 24:530–536 [View Article] [PubMed]
    [Google Scholar]
  14. Wong MS, Wu S, Causey TB, Bennett GN, San KY. Reduction of acetate accumulation in Escherichia coli cultures for increased recombinant protein production. Metab Eng 2008; 10:97–108 [View Article] [PubMed]
    [Google Scholar]
  15. Brown TDK, Jones-Mortimer MC, Kornberg HL. The enzymic interconversion of acetate and acetyl-coenzyme a in Escherichia coli. J Gen Microbiol 1977; 102:327–336 [View Article]
    [Google Scholar]
  16. Kumari S, Beatty CM, Browning DF, Busby SJ, Simel EJ et al. Regulation of acetyl coenzyme a synthetase in Escherichia coli. J Bacteriol 2000; 182:4173–4179 [View Article] [PubMed]
    [Google Scholar]
  17. El-Mansi M. Flux to acetate and lactate excretions in industrial fermentations: physiological and biochemical implications. J Ind Microbiol Biotechnol 2004; 31:295–300 [View Article] [PubMed]
    [Google Scholar]
  18. Ashworth JM, Konrberg HL. The role of isocitrate lyase in Escherichia coli. Biochim Biophys Acta 1964; 89:383–384 [View Article]
    [Google Scholar]
  19. Bennett PM, Holms WH. Reversible inactivation of the isocitrate dehydrogenase of Escherichia coli ML308 during growth on acetate. J Gen Microbiol 1975; 87:37–51 [View Article] [PubMed]
    [Google Scholar]
  20. El-Mansi M. Switches, thresholds, and flux signals in the control of central metabolism’s architecture in Escherichia coli. Proceeding of the 3rd International Congress on Biotechnology 2019; 3:22
    [Google Scholar]
  21. Fischer E, Sauer U. Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur J Biochem 2003; 270:880–891 [View Article]
    [Google Scholar]
  22. Hu LI, Lima BP, Wolfe AJ. Bacterial protein acetylation: the dawning of a new age. Mol Microbiol 2010; 77:15–21 [View Article] [PubMed]
    [Google Scholar]
  23. Wang Q, Zhang Y, Yang C, Xiong H, Lin Y et al. Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux. Science 2010; 327:1004–1007 [View Article] [PubMed]
    [Google Scholar]
  24. LaPorte DC, Chung T. A single gene codes for the kinase and phosphatase which regulate isocitrate dehydrogenase. J Biol Chem 1985; 260:15291–15297 [PubMed]
    [Google Scholar]
  25. LaPorte DC. The isocitrate dehydrogenase phosphorylation cycle: regulation and enzymology. J Cell Biochem 1993; 51:14–18 [View Article] [PubMed]
    [Google Scholar]
  26. Schütze A, Benndorf D, Püttker S, Kohrs F, Bettenbrock K. The impact of ackA, pta, and ackA-pta mutations on growth, gene expression and protein acetylation in Escherichia coli K-12. Front Microbiol 2020; 11:1–13 [View Article]
    [Google Scholar]
  27. Kumari S, Beatty CM, Browning DF, Busby SJ, Simel EJ et al. Regulation of Acetyl Coenzyme A Synthetase in Escherichia coli. J Bacteriol 2000; 182:4173–4179 [View Article]
    [Google Scholar]
  28. Gimenez R, Nuñez MF, Badia J, Aguilar J, Baldoma L. The gene yjcG, cotranscribed with the gene acs, encodes an acetate permease in Escherichia coli. J Bacteriol 2003; 185:6448–6455 [View Article]
    [Google Scholar]
  29. Renilla S, Bernal V, Fuhrer T, Castaño-Cerezo S, Pastor JM et al. Acetate scavenging activity in Escherichia coli: interplay of acetyl-CoA synthetase and the PEP-glyoxylate cycle in chemostat cultures. Appl Microbiol Biotechnol 2012; 93:2109–2124 [View Article] [PubMed]
    [Google Scholar]
  30. El-Mansi EM. Control of metabolic interconversion of isocitrate dehydrogenase between the catalytically active and inactive forms in Escherichia coli. FEMS Microbiol Lett 1998; 166:333–339 [View Article]
    [Google Scholar]
  31. Chao YP, Liao JC. Metabolic responses to substrate futile cycling in Escherichia coli. J Biol Chem 1994; 269:5122–5126 [PubMed]
    [Google Scholar]
  32. Sigala JC, Flores S, Flores N, Aguilar C, de Anda R et al. Acetate metabolism in Escherichia coli strains lacking phosphoenolpyruvate: carbohydrate phosphotransferase system; evidence of carbon recycling strategies and futile cycles. J Mol Microbiol Biotechnol 2009; 16:224–235 [View Article] [PubMed]
    [Google Scholar]
  33. Kamerlin SCL, Warshel A. On the energetics of ATP hydrolysis in solution. J Phys Chem B 2009; 113:15692–15698 [View Article] [PubMed]
    [Google Scholar]
  34. Bergman C, Kashiwaya Y, Veech RL. The effect of pH and free Mg2+ on ATP linked enzymes and the calculation of Gibbs free energy of ATP hydrolysis. J Phys Chem B 2010; 114:16137–16146 [View Article] [PubMed]
    [Google Scholar]
  35. El-Mansi EM, MacKintosh C, Duncan K, Holms WH, Nimmo HG. Molecular cloning and over-expression of the glyoxylate bypass operon from Escherichia coli ML308. Biochem J 1987; 242:661–665 [View Article]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/mic.0.001230
Loading
/content/journal/micro/10.1099/mic.0.001230
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error