Cloning and transcriptional analysis of the nifUHDK genes of Trichodesmium sp. IMS101 reveals stable nifD, nifDK and nifK transcripts

References

1. Alvarez-Morales A., Betancourt-Alvarez M., Klauza K., Hennecke H. 1986; Activation of the Bradyrhizobium japoni- cum nifH and nifDK operons is dependent on promoter-upstream DNA sequence.. Nucleic Acid Res 14:4207–227
   [Google Scholar]
2. Ausubel F.M., Brent R., Kingston R.E., Moore D.D., Seidman J.G., Smith J.A., Struhl K. (editors) 1990 Current Protocols in Molecular Biology New York:: Greene Publishing and Wiley Interscience.;
   [Google Scholar]
3. Belasco J.G., Beatty J.T., Adams C.W., vonGabain A., Cohen S.N. 1985; Differential expression of photosynthesis genes in R. capsulata results from segmental differences in stability within polycistronic rxcA transcript.. Cell 40:171–181
   [Google Scholar]
4. Bergman B., Gallon J.R., Rai A.N., Stal L.J. 1997; Nitrogen fixation by non-heterocystous cyanobacteria.. FEMS Microbiol Rev 19:139–185
   [Google Scholar]
5. Bradley R.L., Reddy K.J. 1997; Cloning, sequencing, and regulation of the global nitrogen regulator gene ntcA in the unicellular diazotrophic cyanobacterium Cyanothece sp. strain BH68K.. J. Bacteriol 179:4407–1410
   [Google Scholar]
6. Brusca J.S., Hale M.A., Carrasco C.D., Golden J.W. 1989; Excision of an 11-kilobase-pair DNA element from within the nifD gene in Anabaena variabilis heterocysts.. J Bacteriol 171:4138–4145
   [Google Scholar]
7. Capone G.C., Zehr J.P., Pearl H.W., Bergman B., Carpenter E.J. 1997; Trichodesmium, a globally significant marine cyanobacterium.. Science 276:1221–1229
   [Google Scholar]
8. Carpenter E.J., Romans K. 1991; Major role of the cyanobacterium Trichodesmium in nutrient cycling in the North Atlantic Ocean.. Science 254:1356–1358
   [Google Scholar]
9. Chen Y., Zehr J.P., Mellon M. 1996; Growth and nitrogen fixation of the diazotrophic filamentous nonheterocystous cyanobacterium Trichodesmium sp. IMS101 in defined media: evidence for circadian rhythm.. J Phycol 32:916–923
   [Google Scholar]
10. Chen Y., Dominic B., Mellon M., Zehr J.P. 1998; Circadian rhythm of nitrogenase gene expression in the diazotrophic filamentous nonheterocystous cyanobacterium Trichodesmium sp. IMS 101.. J Bacteriol 180:3598–3605
    [Google Scholar]
11. Collins J.J., Brill W.J. 1985; Control of Klebsiella pneumoniae nif mRNA synthesis.. J Bacteriol 162:1186–1190
    [Google Scholar]
12. Csiszar K., Houmard J., Damerval T., Tandeau de Marsac N. 1987; Transcriptional analysis of the cyanobacterial gvpABC operon in differentiated cells: occurrence of an antisense RNA complementary to three overlapping transcripts.. Gene 60:29–37
    [Google Scholar]
13. Dixon R.A., Austin S., Buck M., Drummond M., Hill S., Holtel A., MacFarlane S., Merrick M., Minchin S. 1987; Genetics and regulation of nif and related genes in Klebsiella pneumoniae. . Phil Trans R Soc Lond B 317:147–158
    [Google Scholar]
14. Fay P. 1992; Oxygen relations of nitrogen fixation in cyanobacteria.. Microbiol Rev 56:340–373
    [Google Scholar]
15. Flores E., Herrero A. 1994; Assimilatory nitrogen metabolism and its regulation.. In The Molecular Biology of Cyanobacteria Advances in Photosynthesis pp. 1487–517 Bryant D. A. Edited by Dordrecht:: Kluwer.;
    [Google Scholar]
16. Gallon J.R. 1992; Tansley Review No. 44. Reconciling the incompatible: N₂ fixation and O₂.. New Phytol 122:571–609
    [Google Scholar]
17. Gallon J.R., Jones D.A., Page T.S. 1996; Trichodesmium, the paradoxical diazotroph.. Algol Stud (Arch Hydrobiol) 83:215–243
    [Google Scholar]
18. Golden J.W., Robinson S.J., Haselkorn R. 1985; Rearrangement of nitrogen fixation genes during heterocyst differentiation in the cyanobacterium Anabaena. . Nature 314:419–423
    [Google Scholar]
19. Golden J.W., Whorff L.L., Wiest D.R. 1991; Independent regulation of nifHDK transcription and DNA rearrangement during heterocyst differentiation in the cyanobacterium Anabaena sp. strain PCC 7120.. J Bacteriol 173:7098–7105
    [Google Scholar]
20. Haselkorn R., Rice D., Curtis S.E., Robbinson S.J. 1983; Organization and transcription of genes important in Anabaena heterocyst differentiation.. Ann Microbiol 134B:181–193
    [Google Scholar]
21. Haselkorn R., Golden J.W., Lammers P.J., Mulligan M.E. 1986; Developmental rearrangement of cyanobacterial nitrogen- fixation genes.. Trends Genet 2:255–259
    [Google Scholar]
22. Heck C., Rothfuchs R., Jäger A., Rauhut R., Klug G. 1996; Effect of pufQ-pufB intercistronic region on puf mRNA stability in Rhodobacter capsulatus. . Mol Microbiol 20:1165–1178
    [Google Scholar]
23. Houmard J. 1994; Gene transcription in filamentous cyanobacteria.. Microbiol 140:433–441
    [Google Scholar]
24. Houmard J., Capuano V., Colombano M.V., Coursin T., Tandeau de Marsac N. 1990; Molecular characterization of the terminal energy acceptor of cyanobacterial phycobilisomes.. Proc Natl Acad Sci USA 872152–2156
    [Google Scholar]
25. Jackman D.M., Mulligan M.E. 1995; Characterization of a nitrogen-fixation (nif) gene cluster from Anabaena azollae la shows that closely related cyanobacteria have highly variable but structured intergenic regions.. Microbiol 141:2235–2244
    [Google Scholar]
26. Ligon J.M., Nakas J.P. 1987; Isolation and characterization of Frankia sp. strain FaCl genes involved in nitrogen fixation.. Appl Environ Microbiol 53:2321–2327
    [Google Scholar]
27. Luque I., Flores E., Herrero A. 1994; Molecular mechanism for the operation of nitrogen control in cyanobacteria.. EMBO J 13:2862–2869
    [Google Scholar]
28. Magasanik B. 1988; Reversible phosphorylation of an enhancer of an enhancer binding protein regulates the transcription of bacterial utilization genes.. Trends Biochem Sci 12:475–479
    [Google Scholar]
29. Mazel D., Houmard J., Tandeau de Marsac N. 1988; Amultigene family in Calothrix sp. PCC 7601 encodes phycocyanin the major component of the cyanobacterial light harvesting antenna.. Mol Gen Genet 211:296–304
    [Google Scholar]
30. Merrick M.J. 1992; Regulation of nitrogen fixation genes in free-living and symbiotic bacteria.. In Biological Nitrogen Fixation pp. 835–876 Stacey G., Burris R. H., Evans H. J. Edited by New York:: Chapman Hall.;
    [Google Scholar]
31. Michaels A. F., Olson D., Sarmiento J. L., Ammerman J. W., Fanning K., Jahnke R., Knap A. H., Lipshultz F., Prospero J.M. 1996; Inputs, losses and transformations of nitrogen and phosphorus in the pelagic North Atlantic Ocean.. Biogeochemistry 35:181–226
    [Google Scholar]
32. Mulligan M.E., Haselkorn R. 1989; Nitrogen fixation (nif) genes of the cyanobacterium Anabaena species strain PCC 7120.. J Biol Chem 264:19200–19207
    [Google Scholar]
33. Ohki K., Fujita Y. 1988; Aerobic nitrogenase activity measured as acetylene reduction in the marine cyanobacterium Trichodesmium spp. grown under artificial conditions.. Marine Biol 98:111–114
    [Google Scholar]
34. Peterson C. 1992; Control of functional mRNA stability in bacteria: multiple mechanisms of nucleolytic and non-nucleolytic inactivation.. Mol Microbiol 6:277–282
    [Google Scholar]
35. Postgate J.R. 1982 The Fundamentals of Nitrogen Fixation. Cambridge:: Cambridge University Press.;
    [Google Scholar]
36. Prufert-Bebout L, Pearl H. W., Lassen C. 1993; Growth, nitrogen fixation, and spectral attenuation in cultivated Tricho- desmium species.. Appl Environ Microbiol 59:1367–1375
    [Google Scholar]
37. Rai A.N., Borthakur M., Bergman B. 1992; Nitrogenase derepression, its regulation and metabolic changes associated with diazotrophy in the non-heterocystous cyanobacterium Plectonema boryanum PCC 73110.. J Gen Microbiol 138:481–491
    [Google Scholar]
38. Roberts G.P., Brill W.J. 1980; Gene-product relationships of the nif regulon of Klebsiella pneumoniae. . J Bacteriol 144:210–216
    [Google Scholar]
39. Sambrook J., Fritsch E.F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd. Cold Spring Harbor, NY:: Cold Spring Harbor Laboratory.;
    [Google Scholar]
40. Sroga G.E., Landegren U., Bergman B., Lagerström-Fermér M. 1996; Isolation of nifH and part of nifD by modified capture polymerase chain reaction from a natural population of the marine cyanobacterium Trichodesmium sp.. FEMS Microbiol Lett 136:137–145
    [Google Scholar]
41. Strieker O., Masepohl B., Klipp W., Böhme H. 1997; Identification and characterization of the nifV-nifZ-nifT gene region from the filamentous cyanobacterium Anabaena sp. strain PCC 7120.. J Bacteriol 179:2930–2937
    [Google Scholar]
42. Tandeau de Marsac N., Houmard J. 1993; Adaptation of cyanobacteria to new environmental stimuli: new steps towards molecular mechanisms.. FEMS Microbiol Rev 104:119–190
    [Google Scholar]
43. Tandeau de Marsac N., Mazel D., Damerval T., Guglielmi G., Capuano V., Houmard J. 1988; Photoregulation of gene expression in the filamentous cyanobacterium Calothrix sp. PCC 7601: light harvesting complexes and cell differentiation.. Photo- synth Res 18:99–132
    [Google Scholar]
44. Thiel T. 1993; Characterization of genes for an alternative nitrogenase in the cyanobacterium Anabaena variabilis. . J Bacteriol 175:6276–6286
    [Google Scholar]
45. Tumer N.E., Robinson S.J., Haselkorn R. 1983; Different promoters for the Anabaena glutamine synthetase gene during growth using molecular or fixed nitrogen.. Nature 306:337–342
    [Google Scholar]
46. Vega-Palas M.A., Madeuno F., Herrero A., Flores E. 1990; Identification and cloning of a regulatory gene for nitrogen assimilation in the cyanobacterium Synechococcus sp. strain PCC 7942.. J Bacteriol 172:643–647
    [Google Scholar]
47. Vega-Palas M.A., Flores E., Herrero A. 1992; NtcA, a global nitrogen regulator from the cyanobacterium Synechococcusthat belongs to the Crp family of bacterial regulators.. Mol Microbiol 6:1853–1859
    [Google Scholar]
48. Willison J.C., Pierard J., Hübner P. 1993; Sequence and transcript analysis of the nitrogenase structural gene operon (nifHDK) of Rhodobacter capsulatus: evidence for intramolecular processing of nifHDK mRNA.. Gene 133:39–46
    [Google Scholar]
49. Wyman M., Zehr J.P., Capone D.G. 1996; Temporal variability in nitrogenase gene expression in natural population of the marine cyanobacterium Trichodesmium thiebautii. . Appl Environ Microbiol 62:1073–1075
    [Google Scholar]
50. Zehr J.P., McReynolds L.A. 1989; Use of degenerate oligonucleotides for amplification of the nifH gene from the marine cyanobacterium Trichodesmium thiebautii. . Appl Environ Microbiol 55:2522–2526
    [Google Scholar]
51. Zehr J.P., Ohki K., Fujita Y. 1991; Arrangement of nitrogenase structural genes in an aerobic filamentous nonheterocystous cyanobacterium.. J Bacteriol 173:7055–7058
    [Google Scholar]
52. Zehr J.P., Wyman M., Miller V., Duguay L., Capone D.G. 1993; Modification of the Fe protein of nitrogenase in natural populations of Trichodesmium thiebautii. . Appl Environ Microbiol 59:669–676
    [Google Scholar]