1887

Abstract

C-labelled rRNA was prepared from ATCC 27126 and from Alteromonas haloplanktis ATCC 14393. H-labelled rRNA was isolated from ATCC 27119 and ATCC 8071 colony type tl. These rRNAs were hybridized under stringent conditions with filter-fixed DNA from various strains and from organisms of marine origin and/or with mol % G + C values in the range 40 to 50. Each hybrid was described by its and percentage of rRNA binding. From rRNA similarity maps and dendrograms the following conclusions were drawn. The is very heterogeneous and consists of four rRNA branches: (1) alone; (2) the cluster, containing most of the named species and a number of organisms which should be renamed ( ATCC 19262, , and several unnamed alginolytic bacteria); we propose to limit the genus to the former two clusters; (3) , the rRNA cistrons of which resemble those of the Vibrionaceae and are as different from the above two rRNA branches as are those of the , the and belongs to this branch and seems to be a remote relative; (4) and constitute another, separate rRNA branch; in conjunction with their special phenotypic features, we propose to create a new genus, , for them. The exact taxonomic position of could not be established.

Loading

Article metrics loading...

/content/journal/micro/10.1099/00221287-129-10-3057
1983-10-01
2024-05-12
Loading full text...

Full text loading...

/deliver/fulltext/micro/129/10/mic-129-10-3057.html?itemId=/content/journal/micro/10.1099/00221287-129-10-3057&mimeType=html&fmt=ahah

References

  1. Anonymous 1981; Validation of the publication of new names and new combinations previously effectively published outside the IJSB. International Journal of Systematic Bacteriology 31215–218
    [Google Scholar]
  2. Baumann L., Baumann P., Mandel M., Allen R.D. 1972; Taxonomy of aerobic marine eubacteria. Journal of Bacteriology 110:402–429
    [Google Scholar]
  3. Bauwens M., De Ley J. 1981; Improvements in the taxonomy of Flavobacterium by DNA:rRNA hybridizations. In The Flavobacterium-Cytophaga Group pp. 27–31 Reichenbach H., Weeks O.B. Edited by Weinheim:: Verlag Chemie.;
    [Google Scholar]
  4. Bein S.J. 1954; A study of certain chromogenic bacteria isolated from ‘Red Tide’ water with a description of a new species. Bulletin of Marine Sciences of the Gulf and Caribbean 4:110–119
    [Google Scholar]
  5. Bergan T. 1981; Human-and animal-pathogenic members of the genus Pseudomonas. InThe Prokaryotes 1 pp. 666–701 Starr M.P., Stolp H., Trüper H.G., Balows A., Schlegel H.G. Edited by New York, Heidelberg & Berlin:: Springer-Verlag.;
    [Google Scholar]
  6. Buck J.D., Meyers S.P., Leifson E. 1963; Pseudomonas (Flavobacterium) piscicida Bein comb, nov. Journal of Bacteriology 86:1125–1126
    [Google Scholar]
  7. Burton K. 1956; A study of the conditions and mechanism of the diphenylamine reaction for the colorimetric estimation of deoxyribonucleic acid. Biochemical Journal 62:315–323
    [Google Scholar]
  8. Chan K.Y., Baumann L., Garza M.M., Baumann P. 1978; Two new species of Alteromonas- A. espejiana and A. undina. International Journal of Systematic Bacteriology 28:217–222
    [Google Scholar]
  9. Debois J., Degreef H., Vandepitte J., Spaepen J. 1975; Pseudomonas putrefaciens as a cause of infection in humans. Journal of Clinical Pathology 28:993–996
    [Google Scholar]
  10. De Ley J. 1967; The quick approximation of DNA base composition from absorbancy ratios. Antonie van Leeuwenhoek 33:203–208
    [Google Scholar]
  11. De Ley J. 1978; Modem molecular methods in bacterial taxonomy: evaluation, application, prospects. Proceedings of the 4th International Conference on Plant Pathogenic Bacteria, Angers pp. 347–357
    [Google Scholar]
  12. De Ley J., De Smedt J. 1975; Improvements of the membrane filter method for DNA:rRNA hybridizations. Antonie van Leeuwenhoek 41:287–307
    [Google Scholar]
  13. De Ley J., Friedman S. 1965; Similarity of Xanthomonas and Pseudomonas deoxyribonucleic acid. Journal of Bacteriology 89:1306–1309
    [Google Scholar]
  14. De Ley J., Segers P., Gillis M. 1978; Intra- and intergeneric similarities of Chromobacterium and Janthinobacterium ribosomal ribonucleic acid cistrons. International Journal of Systematic Bacteriology 28:154–168
    [Google Scholar]
  15. De Smedt J., De Ley J. 1977; Intra- and intergeneric similarities of Agrobacteriumribosomal ribonucleic acid cistrons. International Journal of Systematic Bacteriology 27:222–240
    [Google Scholar]
  16. De Smedt J., Bauwens M., Tytgat R., De Ley J. 1980; Intra- and intergeneric similarities of ribosomal ribonucleic acid cistrons of free-living, nitrogenfixing bacteria. International Journal of Systematic Bacteriology 30:106–122
    [Google Scholar]
  17. De Vos P., De Ley J. 1983; The intra- and intergeneric similarities of Pseudomonas and Xantho- monas ribosomal ribonucleic acid cistrons. International Journal of Systematic Bacteriology 33:487–509
    [Google Scholar]
  18. Dirienzo J.M., Macleod R.H. 1978; Composition of the fractions separated by polyacrylamide gel electrophoresis of the lipopolysaccharide of a marine bacterium. Journal of Bacteriology 136:158–167
    [Google Scholar]
  19. Gauthier M.J. 1976a; Morphological, physiological and biochemical characteristics of some violet pigmented bacteria isolated from seawater. Canadian Journal of Microbiology 22:138–149
    [Google Scholar]
  20. Gauthier M.J. 1976b; Alteromonas rubra sp. nov., a new marine antibiotic-producing bacterium. International Journal of Systematic Bacteriology 26:459–466
    [Google Scholar]
  21. Gauthier M.J. 1977; Alteromonas citrea sp. nov., a new Gram-negative, yellow-pigmented bacterium isolated from seawater. International Journal of Systematic Bacteriology 27:349–354
    [Google Scholar]
  22. Gauthier M.J. 1982; Validation of the name Alteromonas luteoviolacea. International Journal of Systematic Bacteriology 32:82–86
    [Google Scholar]
  23. Gauthier M.J., Breittmayer V.A. 1979; A new antibiotic-producing bacterium from seawater: Alteromonas aurantiasp. nov. International Journal of Systematic Bacteriology 29:366–372
    [Google Scholar]
  24. Gillis M., De Ley J. 1980; Intra- and intergeneric similarities of the ribosomal ribonucleic acid cistrons of Acetobacter and Gluconobacter. International Journal of Systematic Bacteriology 30:7–27
    [Google Scholar]
  25. Hansen A.J., Weeks O.B., Colwell R.R. 1965; Taxonomy of Pseudomonas piscicida (Bein) Buck, Meyers & Leifson. Journal of Bacteriology 89:752–761
    [Google Scholar]
  26. Humm H.J. 1946; Marine agar-digesting bacteria of the South Atlantic coast. Duke University Marine Station Bulletin 3:45–75
    [Google Scholar]
  27. Jensen M.J., Tebo B.M., Baumann P., Mandel M., Nealson K.H. 1980; Characterization of Alteromonas hanedai, a nonfermentative luminous species of marine origin. Current Microbiology 3:311–315
    [Google Scholar]
  28. Lee J.V., Gibson D.M., Shewan J.M. 1977; A numerical taxonomic study of some Pseudomonaslike marine bacteria. Journal of General Microbiology 98:439–451
    [Google Scholar]
  29. Levin R.E. 1972; Correlation of DNA base composition and metabolism of Pseudomonas putrefaciens isolates from food, human clinical specimens, and other sources. Antonie van Leeuwenhoek 38:121–127
    [Google Scholar]
  30. Long H.F., Hammer B.W. 1941; Classification of organisms important in dairy products. III.Pseudomonas putrefaciens. Iowa Agricultural Experimental Station Research Bulletin 285:176–195
    [Google Scholar]
  31. Mandel M. 1966; Deoxyribonucleic acid base composition in the genus Pseudomonas. Journal of General Microbiology 43:273–292
    [Google Scholar]
  32. Mandel M., Weeks O.B., Colwell R.R. 1966; Deoxyribonucleic acid base composition of Pseudomonas piscicida. Journal of Bacteriology 90:1492–1493
    [Google Scholar]
  33. Meland S.M. 1963; Marine alginate-decomposing bacteria from north Norway. Nytt magasin for botanikk 10:53–80
    [Google Scholar]
  34. Midgley J.E.M. 1965; Effects of different extraction procedures on the molecular characteristics of bacterial ribosomal ribonucleic acid. Biochimica et biophysica acta 95:232–243
    [Google Scholar]
  35. Owen R.J., Legros R.M., Lapage S.P. 1978; Base composition, size and sequence similarities of genome deoxyribonucleic acids from clinical isolates of Pseudomonas putrefaciens. Journal of General Microbiology 104:127–138
    [Google Scholar]
  36. Pivnick H. 1955; Pseudomonas rubescens,a new species from soluble oil emulsions. Journal of Bacteriology 70:1–6
    [Google Scholar]
  37. Reichelt J.L., Baumann P. 1973; Change of the name Alteromonas marinopraesens to Alteromonas haloplanktis comb. nov. and assignment of strain ATCC 23821 and strain C-Al of De Voe and Oginski to this species. International Journal of Systematic Bacteriology 23:438–441
    [Google Scholar]
  38. Richards G.M. 1974; Modification of the diphenylamine reaction giving increased sensitivity and simplicity in the estimation of DNA. Analytical Biochemistry 57:369–376
    [Google Scholar]
  39. Riley P.S., Tatum H.W., Weaver R.E. 1972; Pseudomonas putrefaciens isolates from clinical specimens. Applied Microbiology 24:798–800
    [Google Scholar]
  40. Skerman V.B.D., Mcgowan V., Sneath P.H.A. (editors) 1980; Approved lists of bacterial names. International Journal of Systematic Bacteriology 30:225–420
    [Google Scholar]
  41. Sokal R.R., Sneath P.H.A. 1963 Principles of Numerical Taxonomy. London:: Freeman.;
    [Google Scholar]
  42. Stapp C., Bortels H. 1934; Mikrobiologische Untersuchungen fiber die Zersetzung von Wald- streu. Zentralblatt für Bakteriologie und Parasitenkunde (Abteilung II) 90:28–66
    [Google Scholar]
  43. Swings J., Gillis M., Kersters K., De Vos P., Gossele F., De Ley J. 1980; Frateuria,a new genus for ‘Acetobacter aurantius’. International Journal of Systematic Bacteriology 30:547–556
    [Google Scholar]
  44. Weeks O.B. 1974; Genus Flavobacterium. In Bergey’s Manual of Determinative Bacteriology, 8th edn. pp. 357–364 Buchanan R.E., Gibbons N.E. Edited by Baltimore:: Williams & Wilkins.;
    [Google Scholar]
  45. White A.H. 1940; A bacterial discoloration of print butter. Scientific Agriculture 20:638–645
    [Google Scholar]
  46. Wilkinson S.G., Caudwell P.F. 1980; Lipid composition and chemotaxonomy of Pseudomonas putrefaciens (Alteromonas putrefaciens). Journal of General Microbiology 118:329–341
    [Google Scholar]
  47. Yamamoto M., Iwaki H., Kouno K., Inui T. 1980; Identification of marine methanol-utilizing bacteria. Journal of Fermentation Technology 58:99–106
    [Google Scholar]
  48. Yaphe W. 1957; The use of agarase from Pseudomonas atlantica in the identification of agar in marine algae (Rhodophyceae). Canadian Journal of Microbiology 3:987–993
    [Google Scholar]
  49. Yaphe W. 1959; The determination of K-carrageenin as a factor in the classification of the Rhodophyceae. Canadian Journal of Botany 37:751–757
    [Google Scholar]
  50. Yaphe W. 1962; Detection of marine alginolytic bacteria. Nature; London: 1961120–1121
    [Google Scholar]
  51. Yaphe W., Baxter B. 1955; The enzymic hydrolysis of carrageenin. Applied Microbiology 3:380–384
    [Google Scholar]
  52. Zobell C.E., Allen E.C. 1935; The significance of marine bacteria in the fouling of submerged surfaces. Journal of Bacteriology 29:239–251
    [Google Scholar]
  53. Zobell C.E., Upham H.C. 1944; A list of marine bacteria including descriptions of sixty new species. Bulletin of the Scripps Institute of Oceanography 5:239–292
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/micro/10.1099/00221287-129-10-3057
Loading
/content/journal/micro/10.1099/00221287-129-10-3057
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error