Evolution in Pseudomonas fluorescens

References

1. Ambler R. P. 1971; Sequence data acquisition for the study of phylogeny. In Recent Developments in the Chemical Study of Protein Structures pp. 289–305 Previero A., Pechere J.-F., Coletti-Previero M.-A. Edited by Paris: INSERM;
   [Google Scholar]
2. Ambler R. P. 1974; The evolutionary stability of cytochrome c-551 in Pseudomonas aeruginosa and Pseudomonas fluorescens biotype C. Biochemical Journal 137:3–14
   [Google Scholar]
3. Ambler R. P., Daniel M., Hermoso J., Meyer T. E., Bartsch R. G., Kamen M. D. 1979a; Cytochrome c₂ sequence variation among the recognized species of purple nonsulphur photosynthetic bacteria. Nature; London: 278659–660
   [Google Scholar]
4. Ambler R. P., Meyer T. E., Kamen M. D. 1979b; Anomalies in amino acid sequences of small cytochromes c and cytochromes c’ from two species of purple photosynthetic bacteria. Nature; London: 278661–662
   [Google Scholar]
5. Anderson E. S. 1968; The ecology of transferable drug resistance in the enterobacteria. Annual Review of Microbiology 22:131–180
   [Google Scholar]
6. Ballard R. W., Doudoroff M., Stanier R. Y., Mandel M. 1968; Taxonomy of the aerobic pseudomonads: Pseudomonas diminuta and P. vesiculare. . Journal of General Microbiology 53:349–361
   [Google Scholar]
7. Ballard R. W., Palleroni N. J., Doudoroff M., Stanier R. Y., Mandel M. 1970; Taxonomy of the aerobic pseudomonads: Pseudomonas cepacia, P. marginata, P. alliicola and P. caryo- phylli. . Journal of General Microbiology 60:199–214
   [Google Scholar]
8. Baumann L., Baumann P. 1976; Study of relationship among marine and terrestrial enterobacteria by means of in vitro DNA/ribosomal RNA hybridization. Microbios Letters 3:11–20
   [Google Scholar]
9. Baumann L., Baumann P. 1978; Studies of relationship among terrestrial Pseudomonas, Alcali- genes, and enterobacteria by an immunological comparison of glutamine synthetase. Archives of Microbiology 119:25–30
   [Google Scholar]
10. Brenner D. J. 1973; Deoxyribonucleic acid reassociation in the taxonomy of enteric bacteria. International Journal of Systematic Bacteriology 23:298–307
    [Google Scholar]
11. Chakrabarty A. M. 1972; Genetic basis of the biodegradation of salicylate in Pseudomonas. . Journal of Bacteriology 112:815–823
    [Google Scholar]
12. Chakrabarty A. M., Chou G., Gunsalus I. C. 1973; Genetic regulation of octane dissimilation plasmid in Pseudomonas. . Proceedings of the National Academy of Sciences of the United States of America 70:1137–1140
    [Google Scholar]
13. Champion A. B., Prager E. M., Wachter D., Wilson A. C. 1974; Microcomplement fixation. In Biochemical and Immunological Taxonomy of Animals pp. 397–416 Wright C. A. Edited by London & New York: Academic Press;
    [Google Scholar]
14. Champion A. B., Soderberg K. L., Wilson A. C., Ambler R. P. 1975; Immunological comparison of azurins of known amino acid sequence. Journal of Molecular Evolution 5:291–305
    [Google Scholar]
15. Clarke P. H. 1974; The evolution of enzymes for the utilization of novel substrates. Symposia of the Society for General Microbiology 24:183–217
    [Google Scholar]
16. Cocks G. T., Wilson A. C. 1972; Enzyme evolution in the Enterobacteriaceae. . Journal of Bacteriology 110:793–802
    [Google Scholar]
17. Colwell R. R., Johnson R., Wan L., Lovelace T. E., Brenner D. J. 1974; Numerical taxonomy and deoxyribonucleic acid reassociation in the taxonomy of some Gram-negative fermentative bacteria. International Journal of Systematic Bacteriology 24:422–433
    [Google Scholar]
18. Davis D. H., Stanier R. Y., Doudoroff M., Mandel M. 1970; Taxonomic studies on some Gram-negative, polarly flagellated ‘hydrogen bacteria’ and related species. Archiv für Mikro- biologie 70:1–13
    [Google Scholar]
19. Dayhoff M. O., Park C. M., Mclaughlin P. J. 1972; Building a phylogenetic tree: cytochrome c. . In Atlas of Protein Sequence and Structure 5 pp. 7–16 Dayhoff M. O. Edited by Washington, D.C.: National BioMedical Research Foundation;
    [Google Scholar]
20. Dunn N. W., Gunsalus I. C. 1973; Transmissible plasmid coding early enzymes of naphthalene oxidation in Pseudomonas putida. . Journal of Bacteriology 114:974–979
    [Google Scholar]
21. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees. Science 155:279–284
    [Google Scholar]
22. Gasser F., Hontebeyrie M. 1977; Immunological relationships of glucose-6-phosphate dehydrogenase of Leuconostoc mesenteroides NCDO 768 (= ATCC 12291). International Journal of Systematic Bacteriology 27:6–8
    [Google Scholar]
23. Hegeman G. D., Rosenberg S. L. 1970; The evolution of bacterial enzyme systems. Annual Review of Microbiology 24:429–462
    [Google Scholar]
24. Hontebeyrie M., Gasser F. 1975; Comparative immunological relationships of two distinct sets of isofunctional dehydrogenases in the genus Leuconostoc. . International Journal of Systematic Bacteriology 25:1–6
    [Google Scholar]
25. Hontebeyrie M., Gasser F. 1977; Deoxyribonucleic acid homologies in the genus Leuconostoc. . International Journal of Systematic Bacteriology 27:9–14
    [Google Scholar]
26. Hori H., Osawa S. 1979; Evolutionary change in 5S RNA secondary structure and a phylogenetic tree of 54 5S RNA species. Proceedings of the National Academy of Sciences of the United States of America 76:381–385
    [Google Scholar]
27. Jessen O. 1965 Pseudomonas aeruginosa and Other Green Fluorescent Pseudomonads. A Taxonomic Study. Copenhagen: Munksgaard;
    [Google Scholar]
28. Jones D., Sneath P. H. A. 1970; Genetic transfer and bacterial taxonomy. Bacteriological Reviews 34:40–81
    [Google Scholar]
29. Kemp M. B., Hegeman G. D. 1968; Genetic control of the β-ketoadipate pathway in Pseudomonas aeruginosa. . Journal of Bacteriology 96:1488–1499
    [Google Scholar]
30. Lacey R. W. 1975; Antibiotic resistance plasmids of Staphylococcus aureus and their clinical importance. Bacteriological Reviews 39:1–32
    [Google Scholar]
31. Lee F., Bertrand K., Bennett G., Yanofsky C. 1978; Comparison of the nucleotide sequences of the initial transcribed regions of the tryptophan operons of Escherichia coli and Salmonella typhimurium. . Journal of Molecular Biology 121:193–217
    [Google Scholar]
32. Leidigh B. J., Wheelis M. L. 1973; The clustering on the Pseudomonas putida chromosome of genes specifying dissimilatory functions. Journal of Molecular Evolution 2:235–242
    [Google Scholar]
33. Li S.-L., Hoch S. O. 1974; Amino-terminal sequence of the tryptophan synthetase alpha chain of Bacillus subtilis. . Journal of Bacteriology 118:187–191
    [Google Scholar]
34. Li S.-L., Hanlon J., Yanofsky C. 1974; Separation of anthranilate synthetase components I and II of Escherichia coli, Salmonella typhimurium, and Serratia marcescens and determination of their amino-terminal sequences by automatic Edman degradation. Biochemistry 13:1736–1744
    [Google Scholar]
35. Lin E. C. C., Hacking A. J., Aguilar J. 1976; Experimental models of acquisitive evolution. Bioscience 26:548–555
    [Google Scholar]
36. London J., Chace N. M. 1976; Aldolases of the lactic acid bacteria. Demonstration of immunological relationships among eight genera of Gram-positive bacteria using an anti-pediococcal aldolase serum. Archives of Microbiology 110:121–128
    [Google Scholar]
37. Miozzari G. F., Yanofsky C. 1978a; Naturally occurring promoter down mutation: nucleotide sequence of the trp promoter/operator/ leader region of Shigella dysenteriae 16. Proceedings of the National Academy of Sciences of the United States of America 75:5580–5584
    [Google Scholar]
38. Miozzari G. F., Yanofsky C. 1978b; The regulatory region of the trp operon of Serratia marcescens. . Nature; London: 276684–689
    [Google Scholar]
39. Palleroni N. J., Doudoroff M. 1972; Some properties and taxonomic subdivisions of the genus Pseudomonas. . Annual Review of Phytopathology 10:73–100
    [Google Scholar]
40. Palleroni N. J., Doudoroff M., Stanier R. Y., SolÁnes R. E., Mandel M. 1970; Taxonomy of the aerobic pseudomonads: the properties of the Pseudomonas stutzeri group. Journal of General Microbiology 60:215–231
    [Google Scholar]
41. Palleroni N. J., Ballard R. W., Ralston E., Doudoroff M. 1972; Deoxyribonucleic acid homologies among some Pseudomonas species. Journal of Bacteriology 110:1–11
    [Google Scholar]
42. Palleroni N. J., Kunisawa R., Contopoulou R., Doudoroff M. 1973; Nucleic acid homologies in the genus Pseudomonas. . International Journal of Systematic Bacteriology 23:333–339
    [Google Scholar]
43. Prager E. M., Wilson A. C. 1978; Construction of phylogenetic trees for proteins and nucleic acids: empirical evaluation of alternative matrix methods. Journal of Molecular Evolution 11:129–142
    [Google Scholar]
44. Ralston E., Palleroni N. J., Doudoroff M. 1972; Deoxyribonucleic acid homologies of some so-called ‘Hydrogenomonas’ species. Journal of Bacteriology 109:465–466
    [Google Scholar]
45. Reanney D. 1976; Extrachromosomal elements as possible agents of adaptation and development. Bacteriological Reviews 40:552–590
    [Google Scholar]
46. Reichelt J. L., Baumann P., Baumann L. 1976; Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization. Archives of Microbiology 110:101–120
    [Google Scholar]
47. Rheinwald J. G., Chakrabarty A. M., Gun-Salus I. C. 1973; A transmissible plasmid controlling camphor oxidation in Pseudomonas putida. . Proceedings of the National Academy of Sciences of the United States of America 70:885–889
    [Google Scholar]
48. Richmond M. H. 1973; Resistance factors and their ecological importance to bacteria and to man. Progress in Nucleic Acid Research and Molecular Biology 13:191–248
    [Google Scholar]
49. Riley M., Anilionis A. 1978; Evolution of the bacterial genome. Annual Review of Microbiology 32:519–560
    [Google Scholar]
50. Rosenberg S. L., Hegeman G. D. 1969; Clustering of functionally related genes in Pseudomonas aeruginosa. . Journal of Bacteriology 99:353–355
    [Google Scholar]
51. Sanderson K. E. 1976; Genetic relatedness in the family Enterobacteriaceae. . Annual Review of Microbiology 30:327–349
    [Google Scholar]
52. Sneath P. H. A. 1974; Phylogeny of microorganisms. Symposia of the Society for General Microbiology 24:1–39
    [Google Scholar]
53. Sneath P. H. A., Sokal R. R. 1973 Numerical Taxonomy. San Francisco: W. H. Freeman & Co.;
    [Google Scholar]
54. Stanier R. Y., Palleroni N. J., Doudoroff M. 1966; The aerobic pseudomonads: a taxonomic study. Journal ofGeneral Microbiology 43:159–271
    [Google Scholar]
55. Stanier R. Y., Wachter D., Gasser C., Wilson A. C. 1970; Comparative immunological studies of two Pseudomonas enzymes. Journal of Bacteriology 102:351–362
    [Google Scholar]
56. Stanisich V. A., Richmond M. H. 1975; Gene transfer in the genus Pseudomonas. . In Genetics and Biochemistry of Pseudomonas pp. 163–190 Clarke P. H., Richmond M. H. London: John Wiley;
    [Google Scholar]
57. Stollar D., Levine L. 1963; Two-dimensional immunodiffusion. Methods in Enzymology 6:848–854
    [Google Scholar]
58. Tafler S. W., Setlow P., Levine L. 1973; Serological relatedness of bacterial deoxyribonucleic acid polymerases. Journal of Bacteriology 113:18–23
    [Google Scholar]
59. De Torrontegui G., Diaz R., Wheelis M. L., Canovas J. L. 1976; Supra-operonic clustering of genes specifying glucose dissimilation in Pseudomonas putida. . Molecular and General Genetics 144:307–311
    [Google Scholar]
60. Tronick S. R., Ciardi J. E., Stadtman E. R. 1973; Comparative biochemical and immunological studies of bacterial glutamine synthetases. Journal of Bacteriology 115:858–868
    [Google Scholar]
61. Watanabe T. 1963; Infective heredity of multiple drug resistance in bacteria. Bacteriological Reviews 27:87–115
    [Google Scholar]
62. Wheelis M. L., Stanier R. Y. 1970; The genetic control of dissimilatory pathways in Pseudomonas putida. . Genetics 66:245–266
    [Google Scholar]
63. Williams P. A., Murray K. 1974; Metabolism of benzoate and the methylbenzoates by Pseudomonas putida (arvitla) mt-2: evidence for the existence of a TOL plasmid. Journal of Bacteriology 120:416–423
    [Google Scholar]
64. Wilson A. C. 1975; Evolutionary importance of gene regulation. Stadler Genetics Symposium 7:117–133
    [Google Scholar]
65. Wilson A. C., Carlson S. S., White T. J. 1977; Biochemical evolution. Annual Review of Biochemistry 46:573–639
    [Google Scholar]
66. Worsey M. J., Williams P. A. 1975; Metabolism of toluene and the xylenes by Pseudomonas putida (arvil/a) mt-2: evidence for a new function of the TOL plasmid. Journal of Bacteriology 124:7–13
    [Google Scholar]