1887

Abstract

is a significant pathogen in the cystic fibrosis patient population. PCR amplification and sequencing can provide accurate subspecies identification, and can predict macrolide susceptibility, which is becoming increasingly important for patient management. Molecular techniques for further typing of isolates provide tools for the ongoing investigations into the clinical impact of particular strains. Whole-genome sequencing is likely to be the only technique that provides sufficient resolution for investigating transmission events between patients.

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2014-10-01
2019-11-17
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References

  1. Adékambi T. , Drancourt M. . ( 2004; ). Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. . Int J Syst Evol Microbiol 54:, 2095–2105. [CrossRef] [PubMed]
    [Google Scholar]
  2. Adékambi T. , Berger P. , Raoult D. , Drancourt M. . ( 2006; ). rpoB gene sequence-based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov.. Int J Syst Evol Microbiol 56:, 133–143. [CrossRef] [PubMed]
    [Google Scholar]
  3. Arnold C. , Barrett A. , Cross L. , Magee J. G. . ( 2012; ). The use of rpoB sequence analysis in the differentiation of Mycobacterium abscessus and Mycobacterium chelonae: a critical judgement in cystic fibrosis?. Clin Microbiol Infect 18:, E131–E133. [CrossRef] [PubMed]
    [Google Scholar]
  4. Bastian S. , Veziris N. , Roux A. L. , Brossier F. , Gaillard J. L. , Jarlier V. , Cambau E. . ( 2011; ). Assessment of clarithromycin susceptibility in strains belonging to the Mycobacterium abscessus group by erm(41) and rrl sequencing. . Antimicrob Agents Chemother 55:, 775–781. [CrossRef] [PubMed]
    [Google Scholar]
  5. Blauwendraat C. , Dixon G. L. , Hartley J. C. , Foweraker J. , Harris K. A. . ( 2012; ). The use of a two-gene sequencing approach to accurately distinguish between the species within the Mycobacterium abscessus complex and Mycobacterium chelonae . . Eur J Clin Microbiol Infect Dis 31:, 1847–1853. [CrossRef] [PubMed]
    [Google Scholar]
  6. Blossom D. B. , Alelis K. A. , Chang D. C. , Flores A. H. , Gill J. , Beall D. , Peterson A. M. , Jensen B. , Noble-Wang J. . & other authors ( 2008; ). Pseudo-outbreak of Mycobacterium abscessus infection caused by laboratory contamination. . Infect Control Hosp Epidemiol 29:, 57–62. [CrossRef] [PubMed]
    [Google Scholar]
  7. Broda A. , Jebbari H. , Beaton K. , Mitchell S. , Drobniewski F. . ( 2013; ). Comparative drug resistance of Mycobacterium abscessus and M. chelonae isolates from patients with and without cystic fibrosis in the United Kingdom. . J Clin Microbiol 51:, 217–223. [CrossRef] [PubMed]
    [Google Scholar]
  8. Bryant J. M. , Grogono D. M. , Greaves D. , Foweraker J. , Roddick I. , Inns T. , Reacher M. , Haworth C. S. , Curran M. D. . & other authors ( 2013; ). Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. . Lancet 381:, 1551–1560. [CrossRef] [PubMed]
    [Google Scholar]
  9. CFF ( 2012; ). Cystic Fibrosis Foundation Patient Registry 2011 Annual Data Report to the Center Directors. Bethesda, MD:: Cystic Fibrosis Foundation;.
    [Google Scholar]
  10. Chalermskulrat W. , Sood N. , Neuringer I. P. , Hecker T. M. , Chang L. , Rivera M. P. , Paradowski L. J. , Aris R. M. . ( 2006; ). Non-tuberculous mycobacteria in end stage cystic fibrosis: implications for lung transplantation. . Thorax 61:, 507–513. [CrossRef] [PubMed]
    [Google Scholar]
  11. Choi G.-E. , Shin S. J. , Won C.-J. , Min K.-N. , Oh T. , Hahn M.-Y. , Lee K. , Lee S. H. , Daley C. L. . & other authors ( 2012; ). Macrolide treatment for Mycobacterium abscessus and Mycobacterium massiliense infection and inducible resistance. . Am J Respir Crit Care Med 186:, 917–925.[PubMed] [CrossRef]
    [Google Scholar]
  12. CLSI ( 2011; ). Susceptibility Testing of Mycobacteria, Nocardiae and Other Aerobic Actinomycetes; Approved Standard, , 2nd edn., M24A2. Wayne, PA:: Clinical and Laboratory Standards Institute;.
    [Google Scholar]
  13. Davidson R. M. , Hasan N. A. , de Moura V. C. , Duarte R. S. , Jackson M. , Strong M. . ( 2013; ). Phylogenomics of Brazilian epidemic isolates of Mycobacterium abscessus subsp. bolletii reveals relationships of global outbreak strains. . Infect Genet Evol 20:, 292–297. [CrossRef] [PubMed]
    [Google Scholar]
  14. Duarte R. S. , Lourenço M. C. S. , Fonseca L. S. , Leão S. C. , Amorim E. L. T. , Rocha I. L. L. , Coelho F. S. , Viana-Niero C. , Gomes K. M. . & other authors ( 2009; ). Epidemic of postsurgical infections caused by Mycobacterium massiliense . . J Clin Microbiol 47:, 2149–2155. [CrossRef] [PubMed]
    [Google Scholar]
  15. Euzéby J. . ( 2006; ). List of new names and new combinations previously effectively, but not validly, published. . Int J Syst Evol Microbiol 56:, 2025–2027. [CrossRef] [PubMed]
    [Google Scholar]
  16. Feazel L. M. , Baumgartner L. K. , Peterson K. L. , Frank D. N. , Harris J. K. , Pace N. R. . ( 2009; ). Opportunistic pathogens enriched in showerhead biofilms. . Proc Natl Acad Sci U S A 106:, 16393–16399. [CrossRef] [PubMed]
    [Google Scholar]
  17. Gilljam M. , Scherstén H. , Silverborn M. , Jönsson B. , Ericsson Hollsing A. . ( 2010; ). Lung transplantation in patients with cystic fibrosis and Mycobacterium abscessus infection. . J Cyst Fibros 9:, 272–276. [CrossRef] [PubMed]
    [Google Scholar]
  18. Griffith D. E. , Aksamit T. , Brown-Elliott B. A. , Catanzaro A. , Daley C. , Gordin F. , Holland S. M. , Horsburgh R. , Huitt G. . & other authors ( 2007; ). An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. . Am J Respir Crit Care Med 175:, 367–416.[PubMed] [CrossRef]
    [Google Scholar]
  19. Harada T. , Akiyama Y. , Kurashima A. , Nagai H. , Tsuyuguchi K. , Fujii T. , Yano S. , Shigeto E. , Kuraoka T. . & other authors ( 2012; ). Clinical and microbiological differences between Mycobacterium abscessus and Mycobacterium massiliense lung disease. . J Clin Microbiol 50:, 3556–3561. [CrossRef] [PubMed]
    [Google Scholar]
  20. Harris K. A. , Kenna D. T. , Blauwendraat C. , Hartley J. C. , Turton J. F. , Aurora P. , Dixon G. L. . ( 2012; ). Molecular fingerprinting of Mycobacterium abscessus strains in a cohort of pediatric cystic fibrosis patients. . J Clin Microbiol 50:, 1758–1761. [CrossRef] [PubMed]
    [Google Scholar]
  21. Jamal W. , Salama M. F. , Al Hashem G. , Rifaei M. , Eldeen H. , Husain E. H. , Ahmad S. , Rotimi V. O. . ( 2014; ). An outbreak of Mycobacterium abscessus infection in a pediatric intensive care unit in Kuwait. . Pediatr Infect Dis J 33:, e67–e70. [CrossRef] [PubMed]
    [Google Scholar]
  22. Jönsson B. E. , Gilljam M. , Lindblad A. , Ridell M. , Wold A. E. , Welinder-Olsson C. . ( 2007; ). Molecular epidemiology of Mycobacterium abscessus, with focus on cystic fibrosis. . J Clin Microbiol 45:, 1497–1504. [CrossRef] [PubMed]
    [Google Scholar]
  23. Kim S. Y. , Kang Y. A. , Bae I. K. , Yim J.-J. , Park M. S. , Kim Y. S. , Kim S. K. , Chang J. , Jeong S. H. . ( 2013; ). Standardization of multilocus sequence typing scheme for Mycobacterium abscessus and Mycobacterium massiliense . . Diagn Microbiol Infect Dis 77:, 143–149. [CrossRef] [PubMed]
    [Google Scholar]
  24. Koh W. J. , Jeon K. , Lee N. Y. , Kim B. J. , Kook Y. H. , Lee S. H. , Park Y. K. , Kim C. K. , Shin S. J. . & other authors ( 2011; ). Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus . . Am J Respir Crit Care Med 183:, 405–410.[PubMed] [CrossRef]
    [Google Scholar]
  25. Kreutzfeldt K. M. , McAdam P. R. , Claxton P. , Holmes A. , Seagar A. L. , Laurenson I. F. , Fitzgerald J. R. . ( 2013; ). Molecular longitudinal tracking of Mycobacterium abscessus spp. during chronic infection of the human lung. . PLoS ONE 8:, e63237. [CrossRef] [PubMed]
    [Google Scholar]
  26. Kusunoki S. , Ezaki T. . ( 1992; ). Proposal of Mycobacterium peregrinum sp. nov., nom. rev., and elevation of Mycobacterium chelonae subsp. abscessus (Kubica et al.) to species status: Mycobacterium abscessus comb. nov.. Int J Syst Bacteriol 42:, 240–245. [CrossRef] [PubMed]
    [Google Scholar]
  27. Leao S. C. , Tortoli E. , Viana-Niero C. , Ueki S. Y. , Lima K. V. , Lopes M. L. , Yubero J. , Menendez M. C. , Garcia M. J. . ( 2009; ). Characterization of mycobacteria from a major Brazilian outbreak suggests that revision of the taxonomic status of members of the Mycobacterium chelonae-M. abscessus group is needed. . J Clin Microbiol 47:, 2691–2698. [CrossRef] [PubMed]
    [Google Scholar]
  28. Leao S. C. , Tortoli E. , Euzéby J. P. , Garcia M. J. . ( 2011; ). Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus . . Int J Syst Evol Microbiol 61:, 2311–2313. [CrossRef] [PubMed]
    [Google Scholar]
  29. Leung J. M. , Olivier K. N. . ( 2013; ). Nontuberculous mycobacteria: the changing epidemiology and treatment challenges in cystic fibrosis. . Curr Opin Pulm Med 19:, 662–669. [CrossRef] [PubMed]
    [Google Scholar]
  30. Luong M. L. , Morrissey O. , Husain S. . ( 2010; ). Assessment of infection risks prior to lung transplantation. . Curr Opin Infect Dis 23:, 578–583. [CrossRef] [PubMed]
    [Google Scholar]
  31. Macheras E. , Roux A. L. , Ripoll F. , Sivadon-Tardy V. , Gutierrez C. , Gaillard J. L. , Heym B. . ( 2009; ). Inaccuracy of single-target sequencing for discriminating species of the Mycobacterium abscessus group. . J Clin Microbiol 47:, 2596–2600. [CrossRef] [PubMed]
    [Google Scholar]
  32. Macheras E. , Roux A. L. , Bastian S. , Leão S. C. , Palaci M. , Sivadon-Tardy V. , Gutierrez C. , Richter E. , Rüsch-Gerdes S. . & other authors ( 2011; ). Multilocus sequence analysis and rpoB sequencing of Mycobacterium abscessus (sensu lato) strains. . J Clin Microbiol 49:, 491–499. [CrossRef] [PubMed]
    [Google Scholar]
  33. Macheras E. , Konjek J. , Roux A. L. , Thiberge J. M. , Bastian S. , Leão S. C. , Palaci M. , Sivadon-Tardy V. , Gutierrez C. . & other authors ( 2014; ). Multilocus sequence typing scheme for the Mycobacterium abscessus complex. . Res Microbiol 165:, 82–90. [CrossRef] [PubMed]
    [Google Scholar]
  34. Matsumoto C. K. , Chimara E. , Bombarda S. , Duarte R. S. , Leão S. C. . ( 2011; ). Diversity of pulsed-field gel electrophoresis patterns of Mycobacterium abscessus type 2 clinical isolates. . J Clin Microbiol 49:, 62–68. [CrossRef] [PubMed]
    [Google Scholar]
  35. Nash K. A. , Brown-Elliott B. A. , Wallace R. J. Jr . ( 2009; ). A novel gene, erm(41), confers inducible macrolide resistance to clinical isolates of Mycobacterium abscessus but is absent from Mycobacterium chelonae . . Antimicrob Agents Chemother 53:, 1367–1376. [CrossRef] [PubMed]
    [Google Scholar]
  36. Nessar R. , Cambau E. , Reyrat J. M. , Murray A. , Gicquel B. . ( 2012; ). Mycobacterium abscessus: a new antibiotic nightmare. . J Antimicrob Chemother 67:, 810–818. [CrossRef] [PubMed]
    [Google Scholar]
  37. Palazzo I. C. , Pitondo-Silva A. , Levy C. E. , da Costa Darini A. L. . ( 2011; ). Changes in vancomycin-resistant Enterococcus faecium causing outbreaks in Brazil. . J Hosp Infect 79:, 70–74. [CrossRef] [PubMed]
    [Google Scholar]
  38. Ringuet H. , Akoua-Koffi C. , Honore S. , Varnerot A. , Vincent V. , Berche P. , Gaillard J. L. , Pierre-Audigier C. . ( 1999; ). hsp65 sequencing for identification of rapidly growing mycobacteria. . J Clin Microbiol 37:, 852–857.[PubMed]
    [Google Scholar]
  39. Robinson P. D. , Harris K. A. , Aurora P. , Hartley J. C. , Tsang V. , Spencer H. . ( 2013; ). Paediatric lung transplant outcomes vary with Mycobacterium abscessus complex species. . Eur Respir J 41:, 1230–1232. [CrossRef] [PubMed]
    [Google Scholar]
  40. Sabat A. J. , Budimir A. , Nashev D. , Sá-Leão R. , van Dijl J. M. , Laurent F. , Grundmann H. , Friedrich A. W. . ESCMID Study Group of Epidemiological Markers (ESGEM) ( 2013; ). Overview of molecular typing methods for outbreak detection and epidemiological surveillance. . Euro Surveill 18:, 20380.[PubMed]
    [Google Scholar]
  41. Saiman L. , Siegel J. . ( 2004; ). Infection control in cystic fibrosis. . Clin Microbiol Rev 17:, 57–71. [CrossRef] [PubMed]
    [Google Scholar]
  42. Sassi M. , Ben Kahla I. , Drancourt M. . ( 2013; ). Mycobacterium abscessus multispacer sequence typing. . BMC Microbiol 13:, 3. [CrossRef] [PubMed]
    [Google Scholar]
  43. Scarparo C. , Piccoli P. , Rigon A. , Ruggiero G. , Nista D. , Piersimoni C. . ( 2001; ). Direct identification of mycobacteria from MB/BacT alert 3D bottles: comparative evaluation of two commercial probe assays. . J Clin Microbiol 39:, 3222–3227. [CrossRef] [PubMed]
    [Google Scholar]
  44. Seddon P. , Fidler K. , Raman S. , Wyatt H. , Ruiz G. , Elston C. , Perrin F. , Gyi K. , Bilton D. . & other authors ( 2013; ). Prevalence of nontuberculous mycobacteria in cystic fibrosis clinics, United Kingdom, 2009. . Emerg Infect Dis 19:, 1128–1130. [CrossRef] [PubMed]
    [Google Scholar]
  45. Shang S. , Gibbs S. , Henao-Tamayo M. , Shanley C. A. , McDonnell G. , Duarte R. S. , Ordway D. J. , Jackson M. . ( 2011; ). Increased virulence of an epidemic strain of Mycobacterium massiliense in mice. . PLoS ONE 6:, e24726. [CrossRef] [PubMed]
    [Google Scholar]
  46. Thomson R. , Tolson C. , Sidjabat H. , Huygens F. , Hargreaves M. . ( 2013; ). Mycobacterium abscessus isolated from municipal water - a potential source of human infection. . BMC Infect Dis 13:, 241. [CrossRef] [PubMed]
    [Google Scholar]
  47. Turton J. F. , Turton S. E. , Yearwood L. , Yarde S. , Kaufmann M. E. , Pitt T. L. . ( 2010; ). Evaluation of a nine-locus variable-number tandem-repeat scheme for typing of Pseudomonas aeruginosa . . Clin Microbiol Infect 16:, 1111–1116. [CrossRef] [PubMed]
    [Google Scholar]
  48. Watkins R. R. , Lemonovich T. L. . ( 2012; ). Evaluation of infections in the lung transplant patient. . Curr Opin Infect Dis 25:, 193–198. [CrossRef] [PubMed]
    [Google Scholar]
  49. Wong Y. L. , Ong C. S. , Ngeow Y. F. . ( 2012; ). Molecular typing of Mycobacterium abscessus based on tandem-repeat polymorphism. . J Clin Microbiol 50:, 3084–3088. [CrossRef] [PubMed]
    [Google Scholar]
  50. Zelazny A. M. , Root J. M. , Shea Y. R. , Colombo R. E. , Shamputa I. C. , Stock F. , Conlan S. , McNulty S. , Brown-Elliott B. A. . & other authors ( 2009; ). Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii . . J Clin Microbiol 47:, 1985–1995. [CrossRef] [PubMed]
    [Google Scholar]
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