A SLiM-dependent conformational change in baculovirus IE1 controls its focus formation ability

References

1. Rohrmann GF. Baculovirus Molecular Biology. 4th edition National Center for Biotechnology Information (US); 2019
   [Google Scholar]
2. Nagamine T. Apoptotic arms races in insect‐baculovirus coevolution. Physiol Entomol 2022; 47:1–10 [View Article]
   [Google Scholar]
3. Okano K, Mikhailov VS, Maeda S. Colocalization of baculovirus IE-1 and two DNA-binding proteins, DBP and LEF-3, to viral replication factories. J Virol 1999; 73:110–119 [View Article] [PubMed]
   [Google Scholar]
4. Kawasaki Y, Matsumoto S, Nagamine T. Analysis of baculovirus IE1 in living cells: dynamics and spatial relationships to viral structural proteins. J Gen Virol 2004; 85:3575–3583 [View Article] [PubMed]
   [Google Scholar]
5. Nagamine T, Abe A, Suzuki T, Dohmae N, Matsumoto S. Co-expression of four baculovirus proteins, IE1, LEF3, P143, and PP31, elicits a cellular chromatin-containing reticulate structure in the nuclei of uninfected cells. Virology 2011; 417:188–195 [View Article] [PubMed]
   [Google Scholar]
6. Olson VA, Wetter JA, Friesen PD. The highly conserved basic domain I of baculovirus IE1 is required for hr enhancer DNA binding and hr-dependent transactivation. J Virol 2003; 77:5668–5677 [View Article] [PubMed]
   [Google Scholar]
7. Nagamine T, Kawasaki Y, Iizuka T, Matsumoto S. Focal distribution of baculovirus IE1 triggered by its binding to the hr DNA elements. J Virol 2005; 79:39–46 [View Article] [PubMed]
   [Google Scholar]
8. Kosugi S, Hasebe M, Tomita M, Yanagawa H. Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc Natl Acad Sci U S A 2009; 106:10171–10176 [View Article] [PubMed]
   [Google Scholar]
9. He L, Shao W, Li J, Deng F, Wang H et al. Systematic analysis of nuclear localization of Autographa californica multiple nucleopolyhedrovirus proteins. J Gen Virol 2021; 102:001517 [View Article] [PubMed]
   [Google Scholar]
10. Olson VA, Wetter JA, Friesen PD. Oligomerization mediated by a helix-loop-helix-like domain of baculovirus IE1 is required for early promoter transactivation. J Virol 2001; 75:6042–6051 [View Article] [PubMed]
    [Google Scholar]
11. Olson VA, Wetter JA, Friesen PD. Baculovirus transregulator IE1 requires a dimeric nuclear localization element for nuclear import and promoter activation. J Virol 2002; 76:9505–9515 [View Article] [PubMed]
    [Google Scholar]
12. Diella F, Haslam N, Chica C, Budd A, Michael S et al. Understanding eukaryotic linear motifs and their role in cell signaling and regulation. Front Biosci 2008; 13:6580–6603 [View Article] [PubMed]
    [Google Scholar]
13. Davey NE, Travé G, Gibson TJ. How viruses hijack cell regulation. Trends Biochem Sci 2011; 36:159–169 [View Article] [PubMed]
    [Google Scholar]
14. Kondo A, Maeda S. Host range expansion by recombination of the baculoviruses Bombyx mori nuclear polyhedrosis virus and Autographa californica nuclear polyhedrosis virus. J Virol 1991; 65:3625–3632 [View Article] [PubMed]
    [Google Scholar]
15. Rodems SM, Pullen SS, Friesen PD. DNA-dependent transregulation by IE1 of Autographa californica nuclear polyhedrosis virus: IE1 domains required for transactivation and DNA binding. J Virol 1997; 71:9270–9277 [View Article] [PubMed]
    [Google Scholar]
16. Nagamine T, Inaba T, Sako Y. A nuclear envelop-associated baculovirus protein promotes intranuclear lipid accumulation during infection. Virology 2019; 532:108–117 [View Article] [PubMed]
    [Google Scholar]
17. Motohashi KA. A simple and efficient seamless DNA cloning method using SLiCE from Escherichia coli laboratory strains and its application to SLiP site-directed mutagenesis. BMC Biotechnol 2015; 15:47 [View Article]
    [Google Scholar]
18. Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M et al. Fiji: an open-source platform for biological-image analysis. Nat Methods 2012; 9:676–682 [View Article] [PubMed]
    [Google Scholar]
19. Nagamine T, Kawasaki Y, Abe A, Matsumoto S. Nuclear marginalization of host cell chromatin associated with expansion of two discrete virus-induced subnuclear compartments during baculovirus infection. J Virol 2008; 82:6409–6418 [View Article] [PubMed]
    [Google Scholar]
20. Kovacs GR, Choi J, Guarino LA, Summers MD. Functional dissection of the Autographa californica nuclear polyhedrosis virus immediate-early 1 transcriptional regulatory protein. J Virol 1992; 66:7429–7437 [View Article] [PubMed]
    [Google Scholar]
21. Slack JM, Blissard GW. Identification of two independent transcriptional activation domains in the Autographa californica multicapsid nuclear polyhedrosis virus IE1 protein. J Virol 1997; 71:9579–9587 [View Article] [PubMed]
    [Google Scholar]
22. Taggart DJ, Mitchell JK, Friesen PD. A conserved N-terminal domain mediates required DNA replication activities and phosphorylation of the transcriptional activator IE1 of Autographa californica multicapsid nucleopolyhedrovirus. J Virol 2012; 86:6575–6585 [View Article] [PubMed]
    [Google Scholar]
23. Chisholm GE, Henner DJ. Multiple early transcripts and splicing of the Autographa californica nuclear polyhedrosis virus IE-1 gene. J Virol 1988; 62:3193–3200 [View Article] [PubMed]
    [Google Scholar]
24. Kovacs GR, Guarino LA, Graham BL, Summers MD. Identification of spliced baculovirus RNAs expressed late in infection. Virology 1991; 185:633–643 [View Article]
    [Google Scholar]
25. Kremer A, Knebel-Mörsdorf D. The early baculovirus he65 promoter: on the mechanism of transcriptional activation by IE1. Virology 1998; 249:336–351 [View Article] [PubMed]
    [Google Scholar]
26. Theilmann DA, Willis LG, Bosch BJ, Forsythe IJ, Li Q. The baculovirus transcriptional transactivator ie0 produces multiple products by internal initiation of translation. Virology 2001; 290:211–223 [View Article] [PubMed]
    [Google Scholar]