3D structure of three jumbo phage heads

References

1. Ackermann H-W. 5500 Phages examined in the electron microscope. Arch Virol 2007; 152:227–243 [View Article][PubMed]
   [Google Scholar]
2. Nikolich MP, Filippov AA. Bacteriophage therapy: developments and directions. Antibiotics 2020; 9:E135135 [View Article][PubMed]
   [Google Scholar]
3. Hendrix RW. Jumbo bacteriophages. Curr Top Microbiol Immunol 2009; 328:229–240 [View Article][PubMed]
   [Google Scholar]
4. Yuan Y, Gao M. Jumbo bacteriophages: an overview. Front Microbiol 2017; 8:403 [View Article][PubMed]
   [Google Scholar]
5. Saad AM, Soliman AM, Kawasaki T, Fujie M, Nariya H et al. Systemic method to isolate large bacteriophages for use in biocontrol of a wide-range of pathogenic bacteria. J Biosci Bioeng 2019; 127:73–78 [View Article][PubMed]
   [Google Scholar]
6. Hua J, Huet A, Lopez CA, Toropova K, Pope WH et al. Capsids and genomes of Jumbo-Sized bacteriophages reveal the evolutionary reach of the HK97 fold. mBio 2017; 8:e01579–17 [View Article][PubMed]
   [Google Scholar]
7. Fokine A, Kostyuchenko VA, Efimov AV, Kurochkina LP, Sykilinda NN et al. A three-dimensional cryo-electron microscopy structure of the bacteriophage ΦKZ head. J Mol Biol 2005; 352:117–124 [View Article][PubMed]
   [Google Scholar]
8. Effantin G, Hamasaki R, Kawasaki T, Bacia M, Moriscot C et al. Cryo-electron microscopy three-dimensional structure of the jumbo phage ΦRSL1 infecting the phytopathogen Ralstonia solanacearum . Structure 2013; 21:298–305 [View Article][PubMed]
   [Google Scholar]
9. Stroupe ME, Brewer TE, Sousa DR, Jones KM. The structure of Sinorhizobium meliloti phage ΦM12, which has a novel T=19l triangulation number and is the founder of a new group of T4-superfamily phages. Virology 2014; 450-451:205–212 [View Article][PubMed]
   [Google Scholar]
10. Cui J, Schlub TE, Holmes EC. An allometric relationship between the genome length and virion volume of viruses. J Virol 2014; 88:6403–6410 [View Article][PubMed]
    [Google Scholar]
11. Bhunchoth A, Blanc-Mathieu R, Mihara T, Nishimura Y, Askora A et al. Two asian jumbo phages, ΦRSL2 and ΦRSF1, infect Ralstonia solanacearum and show common features of ΦKZ-related phages. Virology 2016; 494:56–66 [View Article][PubMed]
    [Google Scholar]
12. Yoshikawa G, Askora A, Blanc-Mathieu R, Kawasaki T, Li Y et al. Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes. Sci Rep 2018; 8:4486 [View Article][PubMed]
    [Google Scholar]
13. Bhunchoth A, Phironrit N, Leksomboon C et al. Isolation and characterization of bacteriophages that infect Ralstonia solanacearum in Thailand. ISHS Acta Horticulturae 1207. V International Symposium on Tomato Diseases: Perspectives and Future Directions in Tomato Protection 2018 pp 155–162
    [Google Scholar]
14. Horita M, Tsuchiya K. Causal agent of bacterial wilt disease Ralstonia solanacearum . National Institute of Agriculture Sciences (Ed.), MAAF Microorganism Genetic Resources Manual No.12 Tsukuba, Japan: National Institute of Agricultural Sciences; 2002 pp 5–8
    [Google Scholar]
15. Valentine R, Shapiro B, Stadtman E. Biochemistry; 1968; 72143–2152
16. Zheng SQ, Palovcak E, Armache J-P, Verba KA, Cheng Y et al. MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy. Nat Methods 2017; 14:331–332 [View Article][PubMed]
    [Google Scholar]
17. Zhang K. Gctf: real-time CTF determination and correction. J Struct Biol 2016; 193:1–12 [View Article][PubMed]
    [Google Scholar]
18. Estrozi LF, Navaza J. Ab initio high-resolution single-particle 3D reconstructions: the symmetry adapted functions way. J Struct Biol 2010; 172:253–260 [View Article][PubMed]
    [Google Scholar]
19. Scheres SHW. RELION: implementation of a Bayesian approach to cryo-EM structure determination. J Struct Biol 2012; 180:519–530 [View Article][PubMed]
    [Google Scholar]
20. Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM et al. UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem 2004; 25:1605–1612 [View Article][PubMed]
    [Google Scholar]
21. Nováček J, Benešík M, Pantůček R, Doškař J et al. Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate. Proc Natl Acad Sci U S A 2016; 113:9351–9356 [View Article][PubMed]
    [Google Scholar]
22. Caspar D, Klug A. Physical principles in the construction of regular viruses. cold Spring harbor Symp. Quant. Biol 1962; 27:1–24
    [Google Scholar]
23. Wu W, Thomas JA, Cheng N, Black LW, Steven AC. Bubblegrams reveal the inner body of bacteriophage φKZ. Science 2012; 335:182 [View Article][PubMed]
    [Google Scholar]
24. Helgstrand C, Wikoff WR, Duda RL, Hendrix RW, Johnson JE et al. The refined structure of a protein catenane: the HK97 bacteriophage capsid at 3.44 A resolution. J Mol Biol 2003; 334:885–899 [View Article][PubMed]
    [Google Scholar]
25. Wagemans J, Tsonos J, Holtappels D, Fortuna K, Hernalsteens J-P et al. Structural analysis of jumbo coliphage phAPEC6. Int J Mol Sci 2020; 21:E3119 [View Article][PubMed]
    [Google Scholar]
26. Lander GC, Baudoux A-C, Azam F, Potter CS, Carragher B et al. Capsomer dynamics and stabilization in the T = 12 marine bacteriophage SIO-2 and its procapsid studied by CryoEM. Structure 2012; 20:498–503 [View Article][PubMed]
    [Google Scholar]
27. Huiskonen JT, Kivelä HM, Bamford DH, Butcher SJ. The PM2 virion has a novel organization with an internal membrane and pentameric receptor binding spikes. Nat Struct Mol Biol 2004; 11:850–856 [View Article][PubMed]
    [Google Scholar]
28. Laanto E, Mäntynen S, De Colibus L, Marjakangas J, Gillum A et al. Virus found in a boreal lake links ssDNA and dsDNA viruses. Proc Natl Acad Sci U S A 2017; 114:8378–8383 [View Article][PubMed]
    [Google Scholar]
29. Grimes JM, Pawlowski A, Mäntynen S, Harlos K et al. Bacteriophage P23-77 capsid protein structures reveal the archetype of an ancient branch from a major virus lineage. Structure 2013; 21:718–726 [View Article]
    [Google Scholar]