1887

Abstract

The nucleotide sequence (5966 nucleotides) of cDNA clones of strawberry mild yellow edge-associated potexvirus was determined. The genome contains six open reading frames (ORFs) encoding putative proteins with s of 149423, 25344, 11576, 8079, 25714 and 11216. In the first three putative proteins and the coat protein considerable similarity was found to comparable polypeptides of the potexviruses potato virus X, clover yellow mosaic virus, narcissus mosaic virus, papaya mosaic virus, white clover mosaic virus and lily virus X.

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1992-02-01
2022-01-27
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References

  1. Argos P. 1988; A sequence motif in many polymerases. Nucleic Acids Research 16:9909–9916
    [Google Scholar]
  2. Beck D. L., Forster R. L. S., Bevan M. W., Boxen K. A., Lowe S. C. 1990; Infectious transcripts and nucleotide sequence of cloned cDNA of the potexvirus white clover mosaic virus. Virology 177:152–158
    [Google Scholar]
  3. Beck D. L., Guilford P. J., Voot D. M., Andersen M. T., Forster R. L. S. 1991; Triple gene block proteins of white clover mosaic potexvirus are required for transport. Virology 183:695–702
    [Google Scholar]
  4. Bruenn J. A. 1991; Relationships among the positive strand and double-strand RNA viruses as viewed through their RNA-dependent RNA polymerases. Nucleic Acids Research 19:217–226
    [Google Scholar]
  5. Bundin V. S., Vishnyakova O. A., Zakharyev V. M., Morozov S. Y., Atabekov J. G., Skryabin K. G. 1986; Comparative studies of potexvirus genomes: homology between the primary structure of coat protein genes. Doklady Akademii nauk SSSR 290:728–733
    [Google Scholar]
  6. Clements J. M., Laz T. M., Sherman F. 1988; Efficiency of translation initiation by non-AUG codons in Saccharomyces cerevisiae. Molecular and Cellular Biology 8:4533–4536
    [Google Scholar]
  7. Devereux J., Haeberli P., Smithies O. 1984; A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12:387–395
    [Google Scholar]
  8. Forster R. L. S., Bevan M. W., Harbison S. -A., Gardner R. C. 1988; The complete nucleotide sequence of the potexvirus white clover mosaic virus. Nucleic Acids Research 16:291–303
    [Google Scholar]
  9. Henikoff S. 1984; Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene 28:351–359
    [Google Scholar]
  10. Huisman M. J., Linthorst H. J. M., Bol J. F., Cornelissen B. J. C. 1988; The complete nucleotide sequence of potato virus X and its homologies at the amino acid level with various plus-stranded RNA viruses. Journal of General Virology 69:1789–1798
    [Google Scholar]
  11. Jelkmann W., Martin R. R., Maiss E. 1989; Cloning of four plant viruses from small quantities of double-stranded RNA. Phytopathology 79:1250–1253
    [Google Scholar]
  12. Jelkmann W., Martin R. R., Lesemann D. -E., Vetten H. J., Skelton F. 1990; A new potexvirus associated with strawberry mild yellow edge disease. Journal of General Virology 71:1251–1258
    [Google Scholar]
  13. Koenig R., Lesemann D.-E. 1978; Potexvirus group. C,. M,. I/A,. A,. B. Descriptions of Plant Viruses no 200
    [Google Scholar]
  14. Kozak M. 1989; Context effects and inefficient initiation at nonAUG codons in eucaryotic cell-free translation systems. Molecular and Cellular Biology 9:5073–5080
    [Google Scholar]
  15. Maiss E., Timpe U., Brisske A., Jelkmann W., Casper R., Himmler G., Mattanovich D., Katinger H. W. D. 1989; The complete nucleotide sequence of plum pox virus RNA. Journal of General Virology 70:513–524
    [Google Scholar]
  16. Martin R. R., Jelkmann W., Spiegel S., Converse R. H. 1989; Molecular cloning of the dsRNA associated with strawberry mild yellow-edge virus. Acta horticulturae 236:111–116
    [Google Scholar]
  17. Mehdi H., Ono E., Gupta K. C. 1990; Initiation of translation at CUG, GUG, and ACG codons in mammalian cells. Gene 91:173–178
    [Google Scholar]
  18. Memelink J., van der Vlugt C. I. M., Linthorst H. J. M., Derks A. F. L. M., Asjes C. J., Bol J. F. 1990; Homologies between the genomes of a carlavirus (lily symptomless virus) and a potexvirus (lily virus X) from lily plants. Journal of General Virology 71:917–924
    [Google Scholar]
  19. Morozov S. Yu., Zakchariev V. M., Chernov B. K., Prasolov V. S., Kozlov Yu. V., Atabekov J. G., Skryabin K. G. 1983; The analysis of the primary structure and localization of the coat protein gene of the genomic RNA of potato virus X. Dokladý Akademii nauk SSSR 271:211–215
    [Google Scholar]
  20. Morozov S. Yu., Kanyuka K. V., Levay K. E., Zavriev S. K. 1990; The putative RNA replicase of potato virus M: obvious sequence similarity with potex- and tymoviruses. Virology 179:911–914
    [Google Scholar]
  21. Pearson W. R., Lipman D. J. 1988; Improved tools for biological sequence comparison. Proceedings of the National Academy of Sciences, U.S.A 85:2444–2448
    [Google Scholar]
  22. Poch O., Sauvaget I., Delarue M., Tordo N. 1989; Identification of four conserved motifs among the RNA-dependent RNA polymerase encoding elements. EM BO Journal 8:3867–3874
    [Google Scholar]
  23. Prats A.-C., Billy G. D., Wang P., Darlix J. L. 1989; CUG initiation codon used for the synthesis of a cell surface antigen coded by the murine leukemia virus. Journal of Molecular Biology 205:363–372
    [Google Scholar]
  24. Sanger F., Nicklen S., Coulson A. R. 1977; DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences, U.S.A 74:5463–5467
    [Google Scholar]
  25. Sit T. L., AbouHaidar M. G., Holy S. 1989; Nucleotide sequence of papaya mosaic virus RNA. Journal of General Virology 70:2325–2331
    [Google Scholar]
  26. Sit T. L., White K. A., Holy S., Padmanabhan U., Eweida M., Hiebert M., Mackie G. A., AbouHaidar M. G. 1990; Complete nucleotide sequence of clover yellow mosaic virus RNA. Journal of General Virology 71:1913–1920
    [Google Scholar]
  27. Skryabin K. G., Kraev A. S., Morozov S. Yu., Rozanov M. N., Chernov B. K., Lukasheva L. I., Atabekov J. G. 1988; The nucleotide sequence of potato virus X RNA. Nucleic Acids Research 16:10929–10930
    [Google Scholar]
  28. Sonnenberg N., Shatkin A. J., Ricciardi R. P., Rubin M., Goodman R. M. 1978; Analysis of the terminal structures of RNA from potato virus X. Nucleic Acids Research 5:2501–2521
    [Google Scholar]
  29. Toneguzzo F., Glynn S., Levi E., Mjolsness S., Hayday A. 1988; Use of a chemically modified T7 DNA polymerase for manual and automated sequencing of supercoiled DNA. Bio/Tech-niques 6:460–469
    [Google Scholar]
  30. Zuidema D., Linthorst H. J. M., Huisman M. J., Asies J. C., Bol J. F. 1989; Nucleotide sequence of narcissus mosaic virus RNA. Journal of General Virology 70:267–276
    [Google Scholar]
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