1887

Abstract

We describe the discovery and characterization of a novel paramyxovirus, porcine parainfluenza virus 1 (PPIV-1), from swine. The virus was detected in 12 (3.1 %) of 386 nasopharyngeal and two (0.7 %) of 303 rectal swab samples from 386 deceased pigs by reverse transcription-PCR, with viral loads of up to 10 copies ml. Complete genome sequencing and phylogenetic analysis showed that PPIV-1 represented a novel paramyxovirus within the genus , being most closely related to human parainfluenza virus 1 (HPIV-1) and Sendai virus (SeV). In contrast to HPIV-1, PPIV-1 possessed a mRNA editing function in the phosphoprotein gene. Moreover, PPIV-1 was unique among respiroviruses in having two G residues instead of three to five G residues following the A run at the editing site. Nevertheless, PPIV-1, HPIV-1 and SeV share common genomic features and may belong to a separate group within the genus . The presence of PPIV-1 in mainly respiratory samples suggests a possible association with respiratory disease, similar to HPIV-1 and SeV.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/vir.0.052985-0
2013-10-01
2024-04-26
Loading full text...

Full text loading...

/deliver/fulltext/jgv/94/10/2184.html?itemId=/content/journal/jgv/10.1099/vir.0.052985-0&mimeType=html&fmt=ahah

References

  1. Ben-Ishai Z., Naftali V., Avram A., Yatziv S. 1980; Human infection by a bovine strain of parainfluenza virus type 3. J Med Virol 6:165–168 [View Article][PubMed]
    [Google Scholar]
  2. Bowden T. R., Westenberg M., Wang L. F., Eaton B. T., Boyle D. B. 2001; Molecular characterization of Menangle virus, a novel paramyxovirus which infects pigs, fruit bats, and humans. Virology 283:358–373 [View Article][PubMed]
    [Google Scholar]
  3. Chant K., Chan R., Smith M., Dwyer D. E., Kirkland P.The NSW Expert Group 1998; Probable human infection with a newly described virus in the family Paramyxoviridae. Emerg Infect Dis 4:273–275 [View Article][PubMed]
    [Google Scholar]
  4. Chua K. B., Goh K. J., Wong K. T., Kamarulzaman A., Tan P. S., Ksiazek T. G., Zaki S. R., Paul G., Lam S. K., Tan C. T. 1999; Fatal encephalitis due to Nipah virus among pig-farmers in Malaysia. Lancet 354:1257–1259 [View Article][PubMed]
    [Google Scholar]
  5. Chua K. B., Bellini W. J., Rota P. A., Harcourt B. H., Tamin A., Lam S. K., Ksiazek T. G., Rollin P. E., Zaki S. R.other authors 2000; Nipah virus: a recently emergent deadly paramyxovirus. Science 288:1432–1435 [View Article][PubMed]
    [Google Scholar]
  6. Chua K. B., Wang L. F., Lam S. K., Crameri G., Yu M., Wise T., Boyle D., Hyatt A. D., Eaton B. T. 2001; Tioman virus, a novel paramyxovirus isolated from fruit bats in Malaysia. Virology 283:215–229 [View Article][PubMed]
    [Google Scholar]
  7. Enserink M. 2000; Emerging diseases. Malaysian researchers trace Nipah virus outbreak to bats. Science 289:518–519 [View Article][PubMed]
    [Google Scholar]
  8. Fablet C., Marois-Créhan C., Simon G., Grasland B., Jestin A., Kobisch M., Madec F., Rose N. 2012; Infectious agents associated with respiratory diseases in 125 farrow-to-finish pig herds: a cross-sectional study. Vet Microbiol 157:152–163 [View Article][PubMed]
    [Google Scholar]
  9. Faísca P., Desmecht D. 2007; Sendai virus, the mouse parainfluenza type 1: a longstanding pathogen that remains up-to-date. Res Vet Sci 82:115–125 [View Article][PubMed]
    [Google Scholar]
  10. Falk K., Batts W. N., Kvellestad A., Kurath G., Wiik-Nielsen J., Winton J. R. 2008; Molecular characterisation of Atlantic salmon paramyxovirus (ASPV): a novel paramyxovirus associated with proliferative gill inflammation. Virus Res 133:218–227 [View Article][PubMed]
    [Google Scholar]
  11. Guindon S., Dufayard J. F., Lefort V., Anisimova M., Hordijk W., Gascuel O. 2010; New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59:307–321 [View Article][PubMed]
    [Google Scholar]
  12. Halpin K., Young P. L., Field H. E., Mackenzie J. S. 2000; Isolation of Hendra virus from pteropid bats: a natural reservoir of Hendra virus. J Gen Virol 81:1927–1932[PubMed]
    [Google Scholar]
  13. Heinen E., Herbst W., Schmeer N. 1998; Isolation of a cytopathogenic virus from a case of porcine reproductive and respiratory syndrome (PRRS) and its characterization as parainfluenza virus type 2. Arch Virol 143:2233–2239 [View Article][PubMed]
    [Google Scholar]
  14. Hyndman T. H., Marschang R. E., Wellehan J. F. Jr, Nicholls P. K. 2012; Isolation and molecular identification of Sunshine virus, a novel paramyxovirus found in Australian snakes. Infect Genet Evol 12:1436–1446 [View Article][PubMed]
    [Google Scholar]
  15. Ishida N., Homma M. 1978; Sendai virus. Adv Virus Res 23:349–383 [View Article][PubMed]
    [Google Scholar]
  16. Jack P. J., Boyle D. B., Eaton B. T., Wang L. F. 2005; The complete genome sequence of J virus reveals a unique genome structure in the family Paramyxoviridae. J Virol 79:10690–10700 [View Article][PubMed]
    [Google Scholar]
  17. Janke B. H., Paul P. S., Landgraf J. G., Halbur P. G., Huinker C. D. 2001; Paramyxovirus infection in pigs with interstitial pneumonia and encephalitis in the United States. J Vet Diagn Invest 13:428–433 [View Article][PubMed]
    [Google Scholar]
  18. Karron R. A., Collins P. L. 2007; Parainfluenza viruses. In Fields Virology, 5th edn. Vol. 1 pp. 1497–1526 Edited by Knipe D. M., Howley P. M., Griffin D. E., Lamb R. A., Martin M. A., Roizman B., Straus S. E. Philadelphia, PA: Lippincott Williams & Wilkins;
    [Google Scholar]
  19. Keane T. M., Creevey C. J., Pentony M. M., Naughton T. J., Mclnerney J. O. 2006; Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol 6:29 [View Article][PubMed]
    [Google Scholar]
  20. Lau S. K., To W. K., Tse P. W., Chan A. K., Woo P. C., Tsoi H. W., Leung A. F., Li K. S., Chan P. K.other authors 2005; Human parainfluenza virus 4 outbreak and the role of diagnostic tests. J Clin Microbiol 43:4515–4521 [View Article][PubMed]
    [Google Scholar]
  21. Lau S. K., Woo P. C., Tse H., Fu C. T., Au W. K., Chen X. C., Tsoi H. W., Tsang T. H., Chan J. S.other authors 2008; Identification of novel porcine and bovine parvoviruses closely related to human parvovirus 4. J Gen Virol 89:1840–1848 [View Article][PubMed]
    [Google Scholar]
  22. Lau S. K., Li K. S., Chau K. Y., So L. Y., Lee R. A., Lau Y. L., Chan K. H., Lim W. W., Woo P. C., Yuen K. Y. 2009; Clinical and molecular epidemiology of human parainfluenza virus 4 infections in Hong Kong: subtype 4B as common as subtype 4A. J Clin Microbiol 47:1549–1552 [View Article][PubMed]
    [Google Scholar]
  23. Lau S. K. P., Woo P. C. Y., Wong B. H. L., Wong A. Y. P., Tsoi H. W., Wang M., Lee P., Xu H., Poon R. W. S.other authors 2010; Identification and complete genome analysis of three novel paramyxoviruses, Tuhoko virus 1, 2 and 3, in fruit bats from China. Virology 404:106–116 [View Article][PubMed]
    [Google Scholar]
  24. Lau S. K., Woo P. C., Yip C. C., Li K. S., Fu C. T., Huang Y., Chan K. H., Yuen K. Y. 2011; Co-existence of multiple strains of two novel porcine bocaviruses in the same pig, a previously undescribed phenomenon in members of the family Parvoviridae, and evidence for inter- and intra-host genetic diversity and recombination. J Gen Virol 92:2047–2059 [View Article][PubMed]
    [Google Scholar]
  25. Li Z., Yu M., Zhang H., Magoffin D. E., Jack P. J., Hyatt A., Wang H. Y., Wang L. F. 2006; Beilong virus, a novel paramyxovirus with the largest genome of non-segmented negative-stranded RNA viruses. Virology 346:219–228 [View Article][PubMed]
    [Google Scholar]
  26. Lipkind M., Shoham D., Shihmanter E. 1986; Isolation of a paramyxovirus from pigs in Israel and its antigenic relationships with avian paramyxoviruses. J Gen Virol 67:427–439 [View Article][PubMed]
    [Google Scholar]
  27. Lyn D., Gill D. S., Scroggs R. A., Portner A. 1991; The nucleoproteins of human parainfluenza virus type 1 and Sendai virus share amino acid sequences and antigenic and structural determinants. J Gen Virol 72:983–987 [View Article][PubMed]
    [Google Scholar]
  28. Marsh G. A., de Jong C., Barr J. A., Tachedjian M., Smith C., Middleton D., Yu M., Todd S., Foord A. J.other authors 2012; Cedar virus: a novel Henipavirus isolated from Australian bats. PLoS Pathog 8:e1002836 [View Article][PubMed]
    [Google Scholar]
  29. Matsuoka Y., Curran J., Pelet T., Kolakofsky D., Ray R., Compans R. W. 1991; The P gene of human parainfluenza virus type 1 encodes P and C proteins but not a cysteine-rich V protein. J Virol 65:3406–3410[PubMed]
    [Google Scholar]
  30. Miller P. J., Boyle D. B., Eaton B. T., Wang L. F. 2003; Full-length genome sequence of Mossman virus, a novel paramyxovirus isolated from rodents in Australia. Virology 317:330–344 [View Article][PubMed]
    [Google Scholar]
  31. Moreno-López J., Correa-Girón P., Martinez A., Ericsson A. 1986; Characterization of a paramyxovirus isolated from the brain of a piglet in Mexico. Arch Virol 91:221–231 [View Article][PubMed]
    [Google Scholar]
  32. Morrison T. G. 2003; Structure and function of a paramyxovirus fusion protein. Biochim Biophys Acta 1614:73–84 [View Article][PubMed]
    [Google Scholar]
  33. Newman J. T., Surman S. R., Riggs J. M., Hansen C. T., Collins P. L., Murphy B. R., Skiadopoulos M. H. 2002; Sequence analysis of the Washington/1964 strain of human parainfluenza virus type 1 (HPIV1) and recovery and characterization of wild-type recombinant HPIV1 produced by reverse genetics. Virus Genes 24:77–92 [View Article][PubMed]
    [Google Scholar]
  34. Nollens H. H., Wellehan J. F., Saliki J. T., Caseltine S. L., Jensen E. D., Van Bonn W., Venn-Watson S. 2008; Characterization of a parainfluenza virus isolated from a bottlenose dolphin (Tursiops truncatus). Vet Microbiol 128:231–242 [View Article][PubMed]
    [Google Scholar]
  35. Qiao D., Janke B. H., Elankumaran S. 2009; Molecular characterization of glycoprotein genes and phylogenetic analysis of two swine paramyxoviruses isolated from United States. Virus Genes 39:53–65 [View Article][PubMed]
    [Google Scholar]
  36. Qiao D., Janke B. H., Elankumaran S. 2010; Complete genome sequence and pathogenicity of two swine parainfluenzavirus 3 isolates from pigs in the United States. J Virol 84:686–694 [View Article][PubMed]
    [Google Scholar]
  37. Renshaw R. W., Glaser A. L., Van Campen H., Weiland F., Dubovi E. J. 2000; Identification and phylogenetic comparison of Salem virus, a novel paramyxovirus of horses. Virology 270:417–429 [View Article][PubMed]
    [Google Scholar]
  38. Selvey L. A., Wells R. M., McCormack J. G., Ansford A. J., Murray K., Rogers R. J., Lavercombe P. S., Selleck P., Sheridan J. W. 1995; Infection of humans and horses by a newly described morbillivirus. Med J Aust 162:642–645[PubMed]
    [Google Scholar]
  39. Stevenson R. G., Hore D. E. 1970; Comparative pathology of lambs and calves infected with parainfluenza virus type 3. J Comp Pathol 80:613–618 [View Article][PubMed]
    [Google Scholar]
  40. Thomas S. M., Lamb R. A., Paterson R. G. 1988; Two mRNAs that differ by two nontemplated nucleotides encode the amino coterminal proteins P and V of the paramyxovirus SV5. Cell 54:891–902 [View Article][PubMed]
    [Google Scholar]
  41. Tidona C. A., Kurz H. W., Gelderblom H. R., Darai G. 1999; Isolation and molecular characterization of a novel cytopathogenic paramyxovirus from tree shrews. Virology 258:425–434 [View Article][PubMed]
    [Google Scholar]
  42. Virtue E. R., Marsh G. A., Wang L. F. 2009; Paramyxoviruses infecting humans: the old, the new and the unknown. Future Microbiol 4:537–554 [View Article][PubMed]
    [Google Scholar]
  43. Woo P. C. Y., Lau S. K. P., Wong B. H. L., Wong A. Y. P., Poon R. W. S., Yuen K. Y. 2011; Complete genome sequence of a novel paramyxovirus, Tailam virus, discovered in Sikkim rats. J Virol 85:13473–13474 [View Article][PubMed]
    [Google Scholar]
  44. Woo P. C. Y., Lau S. K. P., Wong B. H. L., Fan R. Y. Y., Wong A. Y. P., Zhang A., Wu Y., Choi G. K. Y., Li K. S. M.other authors 2012a; Feline morbillivirus, a previously undescribed paramyxovirus associated with tubulointerstitial nephritis in domestic cats. Proc Natl Acad Sci U S A 109:5435–5440 [View Article][PubMed]
    [Google Scholar]
  45. Woo P. C., Lau S. K., Wong B. H., Wu Y., Lam C. S., Yuen K. Y. 2012b; Novel variant of Beilong Paramyxovirus in rats, China. Emerg Infect Dis 18:1022–1024 [View Article][PubMed]
    [Google Scholar]
  46. Woo P. C., Lau S. K., Lam C. S., Lau C. C., Tsang A. K., Lau J. H., Bai R., Teng J. L., Tsang C. C.other authors 2012c; Discovery of seven novel Mammalian and avian coronaviruses in the genus Deltacoronavirus supports bat coronaviruses as the gene source of Alphacoronavirus and Betacoronavirus and avian coronaviruses as the gene source of Gammacoronavirus and Deltacoronavirus.. J Virol 86:3995–4008 [View Article][PubMed]
    [Google Scholar]
  47. Young P. L., Halpin K., Selleck P. W., Field H., Gravel J. L., Kelly M. A., Mackenzie J. S. 1996; Serologic evidence for the presence in Pteropus bats of a paramyxovirus related to equine morbillivirus. Emerg Infect Dis 2:239–240 [View Article][PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/vir.0.052985-0
Loading
/content/journal/jgv/10.1099/vir.0.052985-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error