Structure and its transformation of elliptical nege-like virus Tanay virus

References

1. Lefeuvre P, Martin DP, Elena SF, Shepherd DN, Roumagnac P et al. Evolution and ecology of plant viruses. Nat Rev Microbiol 2019; 17:632–644 [View Article] [PubMed]
   [Google Scholar]
2. Whitfield AE, Falk BW, Rotenberg D. Insect vector-mediated transmission of plant viruses. Virology 2015; 479–480:278–289 [View Article] [PubMed]
   [Google Scholar]
3. Nabeshima T, Inoue S, Okamoto K, Posadas-Herrera G, Yu F et al. Tanay virus, a new species of virus isolated from mosquitoes in the Philippines. J Gen Virol 2014; 95:1390–1395 [View Article]
   [Google Scholar]
4. Wang J, Wu J, Li N, Cao Y, He Y et al. A new Tanay virus isolated from mosquitoes in Guangxi, China. Arch Virol 2018; 163:3177–3180 [View Article]
   [Google Scholar]
5. Wang Y, Guo X, Peng H, Lu Y, Zeng X et al. Complete genome sequence of a novel negevirus isolated from Culex tritaeniorhynchus in China. Arch Virol 2019; 164:907–911 [View Article]
   [Google Scholar]
6. Kawakami K, Kurnia YW, Fujita R, Ito T, Isawa H et al. Characterization of a novel negevirus isolated from Aedes larvae collected in a subarctic region of Japan. Arch Virol 2016; 161:801–809 [View Article] [PubMed]
   [Google Scholar]
7. Kallies R, Kopp A, Zirkel F, Estrada A, Gillespie TR et al. Genetic characterization of Goutanap virus, a novel virus related to negeviruses, cileviruses and higreviruses. Viruses 2014; 6:4346–4357 [View Article] [PubMed]
   [Google Scholar]
8. Fujita R, Kuwata R, Kobayashi D, Bertuso AG, Isawa H et al. Bustos virus, a new member of the negevirus group isolated from a Mansonia mosquito in the Philippines. Arch Virol 2017; 162:79–88 [View Article] [PubMed]
   [Google Scholar]
9. Charles J, Tangudu CS, Hurt SL, Tumescheit C, Firth AE et al. Detection of novel and recognized RNA viruses in mosquitoes from the Yucatan Peninsula of Mexico using metagenomics and characterization of their in vitro host ranges. J Gen Virol 2018; 99:1729–1738 [View Article] [PubMed]
   [Google Scholar]
10. Carapeta S, do Bem B, McGuinness J, Esteves A, Abecasis A et al. Negeviruses found in multiple species of mosquitoes from southern Portugal: Isolation, genetic diversity, and replication in insect cell culture. Virology 2015; 483:318–328 [View Article]
    [Google Scholar]
11. Auguste AJ, Carrington CVF, Forrester NL, Popov VL, Guzman H et al. Characterization of a novel Negevirus and a novel Bunyavirus isolated from Culex (Culex) declarator mosquitoes in Trinidad. J Gen Virol 2014; 95:481–485 [View Article] [PubMed]
    [Google Scholar]
12. Vasilakis N, Forrester NL, Palacios G, Nasar F, Savji N et al. Negevirus: a proposed new taxon of insect-specific viruses with wide geographic distribution. J Virol 2013; 87:2475–2488 [View Article] [PubMed]
    [Google Scholar]
13. O’Brien CA, McLean BJ, Colmant AMG, Harrison JJ, Hall-Mendelin S et al. Discovery and characterisation of castlerea virus, a new species of Negevirus isolated in Australia. Evol Bioinform Online 2017; 13:117693431769126 [View Article]
    [Google Scholar]
14. Kondo H, Chiba S, Maruyama K, Andika IB, Suzuki N. A novel insect-infecting virga/nege-like virus group and its pervasive endogenization into insect genomes. Virus Res 2019; 262:37–47 [View Article]
    [Google Scholar]
15. Kuchibhatla DB, Sherman WA, Chung BYW, Cook S, Schneider G et al. Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently “orphan” viral proteins. J Virol 2014; 88:10–20 [View Article] [PubMed]
    [Google Scholar]
16. Shi M, Lin X-D, Tian J-H, Chen L-J, Chen X et al. Redefining the invertebrate RNA virosphere. Nature 2016; 540:539–543 [View Article] [PubMed]
    [Google Scholar]
17. Rohou A, Grigorieff N. CTFFIND4: fast and accurate defocus estimation from electron micrographs. J Struct Biol 2015; 192:216–221 [View Article] [PubMed]
    [Google Scholar]
18. Scheres SHW. A Bayesian view on cryo-EM structure determination. J Mol Biol 2012; 415:406–418 [View Article] [PubMed]
    [Google Scholar]
19. Tang G, Peng L, Baldwin PR, Mann DS, Jiang W et al. EMAN2: an extensible image processing suite for electron microscopy. J Struct Biol 2007; 157:38–46 [View Article] [PubMed]
    [Google Scholar]
20. Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM et al. UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem 2004; 25:1605–1612 [View Article] [PubMed]
    [Google Scholar]
21. Kremer JR, Mastronarde DN, McIntosh JR. Computer visualization of three-dimensional image data using IMOD. J Struct Biol 1996; 116:71–76 [View Article] [PubMed]
    [Google Scholar]
22. Bharat TAM, Russo CJ, Löwe J, Passmore LA, Scheres SHW. Advances in single-particle electron cryomicroscopy structure determination applied to sub-tomogram averaging. Structure 2015; 23:1743–1753 [View Article] [PubMed]
    [Google Scholar]
23. Zivanov J, Nakane T, Forsberg BO, Kimanius D, Hagen WJ et al. New tools for automated high-resolution cryo-EM structure determination in RELION-3. Elife 2018; 7:e42166 [View Article] [PubMed]
    [Google Scholar]
24. Hong C, Pietilä MK, Fu CJ, Schmid MF, Bamford DH et al. Lemon-shaped halo archaeal virus His1 with uniform tail but variable capsid structure. Proc Natl Acad Sci 2015; 112:2449–2454 [View Article] [PubMed]
    [Google Scholar]
25. Ptchelkine D, Gillum A, Mochizuki T, Lucas-Staat S, Liu Y et al. Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging. Nat Commun 2017; 8:1436 [View Article] [PubMed]
    [Google Scholar]
26. White JM, Whittaker GR. Fusion of enveloped viruses in endosomes. Traffic 2016; 17:593–614 [View Article] [PubMed]
    [Google Scholar]