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Abstract

During 2013, a novel equine-like G3P[8] rotavirus emerged as the dominant strain in Australian children with severe rotavirus gastroenteritis. Full genome analysis demonstrated that the strain was an inter-genogroup reassortant, containing an equine-like G3 VP7, a P[8] VP4 and a genogroup 2 backbone I2-R2-C2-M2-A2-N2-T2-E2-H2. The genome constellation of the equine-like G3P[8] was distinct to Australian and global G3P[8] strains. Phylogenetic analysis demonstrated a genetic relationship to multiple gene segments of Japanese strains RVA/JPN/S13-30/2013/G3P[4] and RVA/Human-wt/JPN/HC12016/2012/G1P[8]. The Australian equine-like G3P[8] strain displayed a distinct VP7 antigenic profile when compared with the previously circulating Australian G3P[8] strains. Identification of similar genes in strains from several geographical regions suggested the equine-like G3P[8] strain was derived by multiple reassortment events between globally co-circulating strains from both human and animal sources. This study reinforces the dynamic nature of rotavirus strains and illustrates the potential for novel human/animal reassortant strains to emerge within the human population.

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/content/journal/jgv/10.1099/jgv.0.000352
2016-02-01
2026-03-13

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References

  1. Buttery J. P., Lambert S. B., Grimwood K., Nissen M. D., Field E. J., Macartney K. K., Akikusa J. D., Kelly J. J., Kirkwood C. D. 2011; Reduction in rotavirus-associated acute gastroenteritis following introduction of rotavirus vaccine into Australia's National Childhood vaccine schedule. Pediatr Infect Dis J 30:S25–S29 [View Article][PubMed]
    [Google Scholar]
  2. Coulson B. S., Unicomb L. E., Pitson G. A., Bishop R. F. 1987; Simple and specific enzyme immunoassay using monoclonal antibodies for serotyping human rotaviruses. J Clin Microbiol 25:509–515[PubMed]
    [Google Scholar]
  3. Cowley D., Donato C. M., Roczo-Farkas S., Kirkwood C. D. 2013; Novel G10P[14] rotavirus strain, Northern Territory, Australia. Emerg Infect Dis 19:1324–1327 [View Article][PubMed]
    [Google Scholar]
  4. Darriba D., Taboada G. L., Doallo R., Posada D. 2012; jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772 [View Article][PubMed]
    [Google Scholar]
  5. Desselberger U., Huppertz H. I. 2011; Immune responses to rotavirus infection and vaccination and associated correlates of protection. J Infect Dis 203:188–195 [View Article][PubMed]
    [Google Scholar]
  6. Dóró R., Mihalov-Kovács E., Marton S., László B., Deák J., Jakab F., Juhász Á., Kisfali P., Martella V., other authors. 2014; Large-scale whole genome sequencing identifies country-wide spread of an emerging G9P[8] rotavirus strain in Hungary, 2012. Infect Genet Evol 28:495–512 [View Article][PubMed]
    [Google Scholar]
  7. Dyall-Smith M. L., Lazdins I., Tregear G. W., Holmes I. H. 1986; Location of the major antigenic sites involved in rotavirus serotype-specific neutralization. Proc Natl Acad Sci U S A 83:3465–3468 [View Article][PubMed]
    [Google Scholar]
  8. Estes M. K., Kapikian A. Z. 2007; Rotaviruses. In Fields Virology, 5th edn. pp 1917–1974Edited by Fields B. N., Knipe D. M., Howley P. M. Philadelphia, PA: Wolters Kluwer Health/Lippincott Williams & Wilkins;
    [Google Scholar]
  9. Glass R. I., Parashar U. D., Bresee J. S., Turcios R., Fischer T. K., Widdowson M.-A., Jiang B., Gentsch J. R. 2006; Rotavirus vaccines: current prospects and future challenges. Lancet 368:323–332 [View Article][PubMed]
    [Google Scholar]
  10. Guindon S., Gascuel O. 2003; A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704 [View Article][PubMed]
    [Google Scholar]
  11. Guo D., Liu J., Lu Y., Sun Y., Yuan D., Jiang Q., Lin H., Li C., Si C., Qu L. 2012; Full genomic analysis of rabbit rotavirus G3P[14] strain N5 in China: identification of a novel VP6 genotype. Infect Genet Evol 12:1567–1576 [View Article][PubMed]
    [Google Scholar]
  12. Hull B. P., Dey A., Beard F., Menzies R., Brotherton J. M., Mcintyre P. B. 2013 Annual Immunisation Coverage Report 2013. http://www.ncirs.edu.au/assets/surveillance/coverage/2013-coverage-report-final.pdf
  13. Jere K. C., Esona M. D., Ali Y. H., Peenze I., Roy S., Bowen M. D., Saeed I. K., Khalafalla A. I., Nyaga M. M., other authors. 2014; Novel NSP1 genotype characterised in an African camel G8P[11] rotavirus strain. Infect Genet Evol 21:58–66 [View Article][PubMed]
    [Google Scholar]
  14. Kirkwood C., Masendycz P. J., Coulson B. S. 1993; Characteristics and location of cross-reactive and serotype-specific neutralization sites on VP7 of human G type 9 rotaviruses. Virology 196:79–88 [View Article][PubMed]
    [Google Scholar]
  15. Kirkwood C. D., Boniface K., Barnes G. L., Bishop R. F. 2011; Distribution of rotavirus genotypes after introduction of rotavirus vaccines. Rotarix® and RotaTeq®, into the National Immunization Program of Australia. Pediatr Infect Dis J 30:S48–S53 [View Article][PubMed]
    [Google Scholar]
  16. Kirkwood C. D., Roczo-Farkas S., Australian Rotavirus Surveillance Group. 2014; Australian Rotavirus Surveillance Program annual report, 2013. Commun Dis Intell Q Rep 38:E334–E342[PubMed]
    [Google Scholar]
  17. Lazdins I., Coulson B. S., Kirkwood C., Dyall-Smith M., Masendycz P. J., Sonza S., Holmes I. H. 1995; Rotavirus antigenicity is affected by the genetic context and glycosylation of VP7. Virology 209:80–89 [View Article][PubMed]
    [Google Scholar]
  18. Maes P., Matthijnssens J., Rahman M., Van Ranst M. 2009; RotaC: a web-based tool for the complete genome classification of group A rotaviruses. BMC Microbiol 9:238 [View Article][PubMed]
    [Google Scholar]
  19. Malasao R., Saito M., Suzuki A., Imagawa T., Nukiwa-Soma N., Tohma K., Liu X., Okamoto M., Chaimongkol N., other authors. 2015; Human G3P[4] rotavirus obtained in Japan, 2013, possibly emerged through a human-equine rotavirus reassortment event. Virus Genes 50:129–133 [View Article][PubMed]
    [Google Scholar]
  20. Martella V., Bányai K., Matthijnssens J., Buonavoglia C., Ciarlet M. 2010; Zoonotic aspects of rotaviruses. Vet Microbiol 140:246–255 [View Article][PubMed]
    [Google Scholar]
  21. Matthijnssens J., Ciarlet M., Heiman E., Arijs I., Delbeke T., McDonald S. M., Palombo E. A., Iturriza-Gómara M., Maes P., other authors. 2008; Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82:3204–3219 [View Article][PubMed]
    [Google Scholar]
  22. Matthijnssens J., Ciarlet M., McDonald S. M., Attoui H., Bányai K., Brister J. R., Buesa J., Esona M. D., Estes M. K., other authors. 2011; Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156:1397–1413 [View Article][PubMed]
    [Google Scholar]
  23. Mayor C., Brudno M., Schwartz J. R., Poliakov A., Rubin E. M., Frazer K. A., Pachter L. S., Dubchak I. 2000; vista: visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16:1046–1047 [View Article][PubMed]
    [Google Scholar]
  24. Papp H., Al-Mutairi L. Z., Chehadeh W., Farkas S. L., Lengyel G., Jakab F., Martella V., Szu˝cs G., Bányai K. 2012; Novel NSP4 genotype in a camel G10P[15] rotavirus strain. Acta Microbiol Immunol Hung 59:411–421 [View Article][PubMed]
    [Google Scholar]
  25. Papp H., Matthijnssens J., Martella V., Ciarlet M., Bányai K. 2013; Global distribution of group A rotavirus strains in horses: a systematic review. Vaccine 31:5627–5633 [View Article][PubMed]
    [Google Scholar]
  26. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. 2013; mega6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30:2725–2729 [View Article][PubMed]
    [Google Scholar]
  27. Tate J. E., Parashar U. D. 2014; Rotavirus vaccines in routine use. Clin Infect Dis 59:1291–1301 [View Article][PubMed]
    [Google Scholar]
  28. Tate J. E., Burton A. H., Boschi-Pinto C., Steele A. D., Duque J., Parashar U. D., WHO-coordinated Global Rotavirus Surveillance Network. 2012; 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect Dis 12:136–141 [View Article][PubMed]
    [Google Scholar]
  29. Trojnar E., Sachsenröder J., Twardziok S., Reetz J., Otto P. H., Johne R. 2013; Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J Gen Virol 94:136–142 [View Article][PubMed]
    [Google Scholar]
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