Interference with Physalis mottle tymovirus replication and coat protein synthesis by transcripts corresponding to the 3′-terminal region of the genomic RNA—role of the pseudoknot structure

References

1. Briand J.-P., Keith G., Guilley H. 1978; Nucleotide sequence at the 5′ extremity of the turnip yellow mosaic virus genomic RNA. Proceedings of the National Academy of Sciences, USA 75:3168–3172
   [Google Scholar]
2. Deiman B. A. L. M., Kortlever R. M., Pleij C. W. A. 1997; The role of the pseudoknot at the 3′ end of turnip yellow mosaic virus RNA in minus-strand synthesis by the viral RNA-dependent RNA polymerase. Journal of Virology 71:5990–5996
   [Google Scholar]
3. Ding S., Keese P., Gibbs A. 1989; Nucleotide sequence of the ononis yellow mosaic virus genome. Virology 172:555–563
   [Google Scholar]
4. Ding S., Keese P., Gibbs A. 1990a; The nucleotide sequence ofthe genomic RNA of kennedya yellow mosaic tymovirus-Jervis Bay isolate: relationships with potex-and carlaviruses. Journal of General Virology 71:925–931
   [Google Scholar]
5. Ding S., Howe J., Keese P., Mackenzie A., Meek D., Osorio-Keese M. O., Skotnicki M., Srifah P., Torronen M., Gibbs A. 1990b; The tymobox, a sequence shared by most tymoviruses : its use in molecular studies of tymoviruses. Nucleic Acids Research 18:1181–1187
   [Google Scholar]
6. Dreher T. W., Hall T. C. 1988; Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity. Journal of Molecular Biology 201:31–40
   [Google Scholar]
7. Gargouri-Bouzid R., David C., Haenni A.-L. 1991; The 3′ promoter region involved in RNA synthesis directed by the turnip yellow mosaic virus genome in vitro. FEBS Letters 294:56–58
   [Google Scholar]
8. Huntley C. C., Hall T. C. 1993; Interference with brome mosaic virus replication by targeting the minus strand promoter. Journal of General Virology 74:2445–2452
   [Google Scholar]
9. Inouye M. 1988; Antisense RNA: its functions and applications in gene regulation -a review. Gene 72:25–34
   [Google Scholar]
10. Jacob A. N. K. 1992 Genomic organization and expression of belladonna mottle virus (renamed physalis mottle virus) PhD thesis Indian Institute of Science, Bangalore, India:
    [Google Scholar]
11. Jacob A. N. K., Murthy M. R. N., Savithri H. S. 1992; Nucleotide sequence of the 3′ terminal region of belladonna mottle virus-Iowa (renamed physalis mottle virus) RNA and an analysis of the relationships of tymoviral coat proteins. Archives of Virology 123:367–377
    [Google Scholar]
12. Joshi S., Chapeville F., Haenni A.-L. 1982; Turnip yellow mosaic virus RNA is aminoacylated in vivo in Chinese cabbage leaves. EMBO Journal 1:935–938
    [Google Scholar]
13. Keese P., Mackenzie A., Gibbs A. 1989; Nucleotide sequence of the genome of an Australian isolate of turnip yellow mosaic tymovirus. Virology 172:536–546
    [Google Scholar]
14. Kekuda R., Karande A. A., Jacob A. N. K., Savithri H. S. 1993; Architecture of physalis mottle tymovirus as probed by monoclonal antibodies and cross-linking studies. Virology 193:959–966
    [Google Scholar]
15. Kroner P., Richards D., Traynor P., Ahlquist P. 1989; Defined mutations in a small region of the brome mosaic virus 2a gene cause diverse temperature-sensitive RNA replication phenotypes. Journal of Virology 63:5302–5309
    [Google Scholar]
16. Lahser F. C., Marsh L. E., Hall T. C. 1993; Contributions of the brome mosaic virus RNA-3 3′-nontranslated region to replication and translation. Journal of Virology 67:3295–3303
    [Google Scholar]
17. Marsh L. E., Pogue G. P., Szybiak U., Connell J. P., Hall T. C. 1991; Non-replicating deletion mutants of brome mosaic virus RNA-2 interfere with viral replication. Journal of General Virology 72:2367–2374
    [Google Scholar]
18. Miller W. A., Bujarski J. J., Dreher T. W., Hall T. C. 1986; Minus-strand initiation by brome mosaic virus replicase within the 3′ tRNA-like structure of native and modified RNA templates. Journal of Molecular Biology 187:537–546
    [Google Scholar]
19. Morch M.-D., Boyer J.-C., Haenni A.-L. 1988; Overlapping open reading frames revealed by complete nucleotide sequencing of turnip yellowmosaicvirus genomicRNA. Nucleic Acids Research 16:6157–6173
    [Google Scholar]
20. Osorio-Keese M. E., Keese P., Gibbs A. 1989; Nucleotide sequence of the genome of eggplant mosaic tymovirus. Virology 172:547–554
    [Google Scholar]
21. Pinck M., Yot P., Chapeville F., Duranton H. M. 1970; Enzymatic binding of valine to the 3′ end of TYMV-RNA. Nature 226:954–956
    [Google Scholar]
22. Powell P. A., Stark D. M., Sanders P. R., Beachy R. N. 1989; Protection against tobacco mosaic virus in transgenic plants that express tobacco mosaic virus antisense RNA. Proceedings of the National Academy of Sciences, USA 86:6949–6952
    [Google Scholar]
23. Rao A. L. N., Hall T. C. 1991; Interference in trans with brome mosaic virus replication by RNA-2 bearing aminoacylation-deficient mutants. Virology 180:16–22
    [Google Scholar]
24. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
25. Singh R. N., Dreher T. W. 1997; Turnip yellow mosaic virus RNA-dependent RNA polymerase : initiation of minus strand synthesis in vitro. Virology 233:430–439
    [Google Scholar]
26. Skuzeski J. M., Bozarth C. S., Dreher T. W. 1996; The turnip yellow mosaic virus tRNA-like structure cannot be replaced by generic tRNA-like elements or by heterologous 3′ untranslated regions known to enhance mRNA expression and stability. Journal of Virology 70:2107–2115
    [Google Scholar]
27. Srividhya V., Savithri H. S. 1996; Interactions of the 3′ terminal and 5′ terminal regions of physalis mottle virus genomic RNA with its replication complex. Journal of Biosciences 21:1–11
    [Google Scholar]
28. van Belkum A., Bingkun J., Rietveld K., Pleij C. W. A., Bosch L. 1987; Structural similarities among valine-accepting tRNA-like structures in tymoviral RNAs and elongator tRNAs. Biochemistry 26:1144–1151
    [Google Scholar]
29. Yot P., Pinck M., Haenni A.-L., Duranton H. M., Chapeville F. 1970; Valine specific tRNA-like structure in turnip yellow mosaic virus RNA. Proceedings of the National Academy of Sciences, USA 67:1345–1352
    [Google Scholar]
30. Zaccomer B., Cellier F., Boyer J. C., Haenni A. L., Tepfer M. 1993; Transgenic plants that express genes including the 3′ untranslated region of the turnip yellow mosaic virus (TYMV) genome are partially protected against TYMV infection. Gene 136:87–94
    [Google Scholar]