1887

Abstract

Summary

Analysis of nucleic acids from grapevine tissues by two-dimensional gel electrophoresis demonstrated the presence of two bands of circular RNA. The smaller RNA contained about 300 nucleotide residues and was identified as hop stunt viroid by nucleotide sequencing. The larger RNA band was a mixture of species and contained similar amounts of two components, referred to as RNA 1a and RNA 1b, and in addition a trace amount of citrus exocortis viroid (CEV) which became detectable only after inoculation of the mixture to tomato. The identity of CEV was determined by probe hybridization and nucleotide sequencing. Both RNAs 1a and 1b are distinct from CEV and have estimated sizes larger than those of CEV and other viroids reported so far. RNA 1a preparations were infectious in cucumber and in tomato and the recovered viroid had unique properties. We have provisionally named this viroid Australian grapevine viroid. Evidence for the autonomous replication of RNA 1b was not obtained.

Loading

Article metrics loading...

/content/journal/jgv/10.1099/0022-1317-69-2-413
1988-02-01
2024-04-26
Loading full text...

Full text loading...

/deliver/fulltext/jgv/69/2/JV0690020413.html?itemId=/content/journal/jgv/10.1099/0022-1317-69-2-413&mimeType=html&fmt=ahah

References

  1. BARLASS M., SKENE K. G. M., WOODHAM R. C., KRAKE L. R. 1982; Regeneration of virus free grapevines using in vitro apical culture. Annals of Applied Biology 101:291–295
    [Google Scholar]
  2. BOVEY R., GARTEL W., HEWITT W. B., MARTELLI G. P., VUITTENEZ A. 1980 Virus and Virus-like Diseases in Grapevines Lausanne: Editions Payot;
    [Google Scholar]
  3. BUCHOLTZ C. A., REISNER A. H. 1986; MBIS - an integrated system for the retrieval and analyses of sequence data from nucleic acids and proteins. Nucleic Acids Research 14:265–272
    [Google Scholar]
  4. BUZAYAN J. M., GERLACH W. L., BRUENING G., KEESE P., GOULD A. R. 1986; Nucleotide sequence of satellite tobacco ringspot virus RNA and its relationship to multimeric forms. Virology 151:186–199
    [Google Scholar]
  5. FERNOW K. H. 1967; Tomato as a test plant for detecting mild strains of potato spindle tuber virus. Phytopathology 57:1347–1352
    [Google Scholar]
  6. FLORES R., DURAN-VILA N., PALLAS V., SEMANCIK J. S. 1985; Detection of viroid and viroid-like RNAs from grapevine. Journal of General Virology 66:2095–2102
    [Google Scholar]
  7. FRANKLIN R. M. 1966; Purification and properties of the replicative intermediate of the RNA bacteriophage R17. Proceedings of the National Academy of Sciences, U.S.A 55:1504–1511
    [Google Scholar]
  8. GARCIA-ARENAL F., PALLAS V., FLORES R. 1987; The sequence of a viroid from grapevine closely related to the severe isolate of citrus exocortis viroid. Nucleic Acids Research 15:4203–4210
    [Google Scholar]
  9. GOULD A. R., SYMONS R. H. 1982; Cucumber mosaic virus RNA 3. Determination of the nucleotide sequence provides the amino acid sequences of protein 3A and viral coat protein. European Journal of Biochemistry 126:217–226
    [Google Scholar]
  10. HASELOFF J., SYMONS R. H. 1981; Chrysanthemum stunt viroid: primary sequence and secondary structure. Nucleic Acids Research 9:2741–2752
    [Google Scholar]
  11. HASELOFF J., SYMONS R. H. 1982; Comparative sequence and structure of viroid-like RNAs of two plant viruses. Nucleic Acids Research 10:3681–3691
    [Google Scholar]
  12. HASELOFF J., MOHAMED N. A., SYMONS R. H. 1982; Viroid RNAs of cadang-cadang disease of coconuts. Nature, London 299:316–321
    [Google Scholar]
  13. HOOPES B. C., McCLURE W. R. 1981; Studies on the selectivity of DNA precipitation by spermine. Nucleic Acids Research 9:5493–5504
    [Google Scholar]
  14. HUTCHINS C. J., KEESE P., VISVADER J. E., RATHJEN P. D., McINNES J. L., SYMONS R. H. 1985; Comparison of multimeric plus and minus forms of viroids and virusoids. Plant Molecular Biology 4:293–304
    [Google Scholar]
  15. KEESE P., SYMONS R. H. 1985; Domains in viroids: evidence of intermolecular RNA rearrangements and their contribution to viroid evolution. Proceedings of the National Academy of Sciences, U.S.A 82:4582–4586
    [Google Scholar]
  16. KEESE P., BRUENING G., SYMONS R. H. 1983; Comparative sequence and structure of circular RNAs from two isolates of lucerne transient streak virus. FEBS Letters 159:185–190
    [Google Scholar]
  17. LINTHORST H. J. M., KAPER J. M. 1984; Circular satellite-RNA molecules in satellite of tobacco ringspot virus-infected tissue. Virology 137:206–210
    [Google Scholar]
  18. MANIATIS T., FRITSCH E. F., SAMBROOK J. 1982 Molecular Cloning: A Laboratory Manual New York: Cold Spring Harbor Laboratory;
    [Google Scholar]
  19. MAXAM A. M., GILBERT W. 1980; Sequencing end-labeled DNA with base-specific chemical cleavages. Methods in Enzymology 65:499–560
    [Google Scholar]
  20. MERRIL C. R, GOLDMAN D., SEDMAN S. A., EBERT M. H. 1981; Ultrasensitive stain for proteins in Polyacrylamide gels shows regional variation in cerebrospinal fluid proteins. Science 211:1437–1438
    [Google Scholar]
  21. NIBLETT C. L., DICKSON E., FERNOW K. H., HORST R. K., ZAITLIN M. 1978; Cross-protection among four viroids. Virology 91:198–203
    [Google Scholar]
  22. PALUKAITIS P., SYMONS R. H. 1980; Purification and characterization of the circular and linear forms of chrysanthemum stunt viroid. Journal of General Virology 46:477–489
    [Google Scholar]
  23. REISNER A. H., BUCHOLTZ C. A. 1986; The MTX package of computer programs for the comparison of sequences of nucleotides and amino acid residues. Nucleic Acids Research 14:233–238
    [Google Scholar]
  24. REZAIAN M. A., FRANCKI R. I. B. 1973; Replication of tobacco ringspot virus. 1. Detection of a low molecular weight double-stranded RNA from infected plants. Virology 56:238–249
    [Google Scholar]
  25. REZAIAN M. A., JACKSON A. O. 1981; Low-molecular-weight RNAs associated with tobacco ringspot virus are satellites. Virology 114:534–541
    [Google Scholar]
  26. REZAIAN M. A., WILLIAMS R. H. V., GORDON K. H. J., GOULD A. R., SYMONS R. H. 1984; Nucleotide sequence of cucumber mosaic virus RNA 2 reveals a translation product significantly homologous to corresponding proteins of other viruses. European Journal of Biochemistry 143:277–284
    [Google Scholar]
  27. RIESNER D., GROSS H. J. 1985; Viroids. Annual Review of Biochemistry 54:531–564
    [Google Scholar]
  28. SäNGER H. L., RAMM K., DOMDEY H., GROSS H. J., HENCO K., RIESNER D. 1979; Conversion of circular viroid to linear strands. FEBS Letters 99:117–122
    [Google Scholar]
  29. SANO T., UYEDA I., SHIKATA E., MESHI T., OHNO T., OKADA Y. 1985a; A viroid-like RNA isolated from grapevine has a high sequence homology with hop stunt viroid. Journal of General Virology 66:333–338
    [Google Scholar]
  30. SANO T., OHSHIMA K., UYEDA I., SHIKATA E., MESHI T., OKADA Y. 1985b; Nucleotide sequence of grapevine viroid: a grapevine isolate of hop stunt viroid. Proceedings of the Japan Academy 61:265–268
    [Google Scholar]
  31. SCHUMACHER J., RANDLES J. W., RIESNER D. 1983; A two-dimensional electrophoretic technique for the detection of circular viroids and virusoids. Analytical Biochemistry 135:288–295
    [Google Scholar]
  32. SEMANCIK J. S., RIVERA-BUSTAMANTE R., GOHEEN A. C. 1987; Widespread occurrence of viroid-like RNAs in grapevines. American Journal of Enology and Viticulture 38:35–40
    [Google Scholar]
  33. SYMONS R. H. 1981; Avocado sunblotch viroid: primary sequence and proposed secondary structure. Nucleic Acids Research 9:6527–6537
    [Google Scholar]
  34. VISVADER J. E., SYMONS R. H. 1983; Comparative sequence and structure of different isolates of citrus exocortis viroid. Virology 130:232–237
    [Google Scholar]
  35. VISVADER J. E., SYMONS R. H. 1985; Eleven new sequence variants of citrus exocortis viroid and the correlation of sequence with pathogenicity. Nucleic Acids Research 13:2907–2920
    [Google Scholar]
  36. WHITE B. A., BANCROFT F. C. 1982; Cytoplasmic dot hybridization. Simple analysis of relative mRNA levels in multiple small cell or tissue samples. Journal of Biological Chemistry 257:8569–8572
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jgv/10.1099/0022-1317-69-2-413
Loading
/content/journal/jgv/10.1099/0022-1317-69-2-413
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error